Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005500

Physical Location & Seq

Genomic Coordinates Reverse (-)

3846332 .. 3847654

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g05670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGCAAGGCGAATTGTGTTTCGAGGATCCGTCAACTTTCTCCATTTTGATTGTCGGGAATATTGATCCCTCTATAGCACTTCCTCTTATATTGCAGTATATGGGTGGGATACCAAAGGCTCCTGAACCGCTCCTACAATTTAATCGCGATGACCTCGTAGGACTACCATTCACCTTTCCTAAAACCAGAATAAGAGAAGTGGTTCGCAGCCCAATGGTGGAAGAACAATGTTCTGTCCAATTGTGCTTCCCTGTGGAACTGAAAAATGGAACCATGCTGTGTACCTTTCTTGTCGTATATTACAAAGGAAAAACATTTATATGGCAGGTAGAAGACATTCACATTGTTGGATTCCTGAGCAAACTTCTTGAAACAAAAATTATGCAGGTTCCACGATTCAAACATGGACAGATCTACACTGTAGGTGTTTCTGTATTTCTTGGGGGTAGTAAGCCTTCCAGAACTGCAAATGTTCGTGGTGATCGAATCATAAACTTTTCTTGTGATCCAGAAATCTCGTCAAAGCTGGTTGGTGCTTTTGTTGTCGATCTTACTCTGGATGAAATAATACATCTCCAAGAGGAAGGGCCGTCAGATGAGGATGTCTCAACCATCCTTGAAATTGAGCAAAGAGCCCACGAAAATGGGCTTCAAGTAAGTTTTCTTGTTACAAAAGGTTTCATTTTGGTCAGTGATGCACCATTGTTCCAACAATCACCTAGTGCACAAAGTTTCGTGGATGCGAGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

251

Amino Acids

27.88

Weight (kDa)

4.91

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56730
fragaria_vesca	FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790
malus_domestica	MD15G1202300.v1.1
prunus_persica	Prupe.7G214900_v2.0.a1
pyrus_communis	pycom02g05670 pycom15g17970
rosa_chinensis	RchiOBHm_Chr2g0091871 RchiOBHm_Chr2g0091891 RchiOBHm_Chr2g0092561
rosa_laevigata	RLG00000016323
rosa_multiflora	Rmu_sc0004296.1_g000004 Rmu_sc0010910.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148970
rosa_rugosa	Rorug02G0027600
rosa_samantha	Rh2AG066800 Rh2AG067000 Rh2AG073400 Rh2BG066000 Rh2BG074300 Rh2CG067400 Rh2CG075400 Rh2DG065700 Rh2DG072500
rosa_wichuraiana	Rw2G005420 Rw2G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	316, 376
AccBSI	CCGCTC	1 cut(s)	130
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	128
AclWI	GGATC	4 cut(s)	20, 33, 59, 500
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	217
AgsI	TTSAA	4 cut(s)	371, 400, 620, 653
AluBI	AGCT	1 cut(s)	526
AluI	AGCT	1 cut(s)	526
Alw21I	GWGCWC	1 cut(s)	727
Alw26I	GTCTC	2 cut(s)	610, 741
Alw44I	GTGCAC	1 cut(s)	723
AlwI	GGATC	4 cut(s)	20, 33, 59, 500
AoxI	GGCC	1 cut(s)	587
ApaLI	GTGCAC	1 cut(s)	723
ApeKI	GCWGC	1 cut(s)	207
Asp700I	GAANNNNTTC	2 cut(s)	201, 336
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	163, 491, 708
BaeGI	GKGCMC	1 cut(s)	727
BamHI	GGATCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	637
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	727
BbvI	GCAGC	1 cut(s)	219
BccI	CCATC	1 cut(s)	620
BceAI	ACGGC	1 cut(s)	574
BciVI	GTATCC	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	610, 741
BfaI	CTAG	1 cut(s)	720
BfmI	CTRYAG	2 cut(s)	72, 420
BfuAI	ACCTGC	2 cut(s)	316, 376
BfuI	GTATCC	1 cut(s)	102
BglII	AGATCT	1 cut(s)	411
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	4 cut(s)	27, 120, 271, 390
BmsI	GCATC	2 cut(s)	685, 730
BpiI	GAAGAC	1 cut(s)	339
BplI	GAGNNNNNCTC	2 cut(s)	590, 622
Bpu10I	CCTNAGC	1 cut(s)	356
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
BseGI	GGATG	4 cut(s)	565, 607, 612, 745
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMII	CTCAG	1 cut(s)	347
BseSI	GKGCMC	1 cut(s)	727
BseXI	GCAGC	1 cut(s)	219
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	1 cut(s)	589
BsiHKAI	GWGCWC	1 cut(s)	727
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	610, 741
BsnI	GGCC	1 cut(s)	589
Bsp1286I	GDGCHC	2 cut(s)	637, 727
Bsp143I	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	1 cut(s)	128
BspANI	GGCC	1 cut(s)	589
BspCNI	CTCAG	1 cut(s)	348
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	4 cut(s)	27, 120, 271, 390
BspMI	ACCTGC	2 cut(s)	316, 376
BspPI	GGATC	4 cut(s)	20, 33, 59, 500
BsrBI	CCGCTC	1 cut(s)	130
BssMI	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
Bst4CI	ACNGT	1 cut(s)	421
BstDEI	CTNAG	1 cut(s)	356
BstF5I	GGATG	4 cut(s)	565, 607, 612, 745
BstFNI	CGCG	1 cut(s)	147
BstKTI	GATC	6 cut(s)	28, 67, 414, 484, 508, 550
BstMAI	GTCTC	2 cut(s)	610, 741
BstMBI	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
BstSFI	CTRYAG	2 cut(s)	72, 420
BstSLI	GKGCMC	1 cut(s)	727
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	219
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	2 cut(s)	25, 411
BstXI	CCANNNNNNTGG	1 cut(s)	644
BstYI	RGATCY	2 cut(s)	25, 411
BsuI	GTATCC	1 cut(s)	102
BsuRI	GGCC	1 cut(s)	589
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	4 cut(s)	565, 607, 612, 745
BtsIMutI	CAGTG	2 cut(s)	417, 697
BtuMI	TCGCGA	1 cut(s)	147
BveI	ACCTGC	2 cut(s)	316, 376
Cfr13I	GGNCC	1 cut(s)	587
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	274, 404
CviJI	RGCY	7 cut(s)	119, 210, 454, 526, 589, 635, 649
CviKI_1	RGCY	7 cut(s)	119, 210, 454, 526, 589, 635, 649
CviQI	GTAC	1 cut(s)	282
DdeI	CTNAG	1 cut(s)	356
DpnI	GATC	6 cut(s)	27, 66, 413, 483, 507, 549
DpnII	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
DraIII	CACNNNGTG	1 cut(s)	722
Eco24I	GRGCYC	1 cut(s)	637
EcoT38I	GRGCYC	1 cut(s)	637
FaeI	CATG	2 cut(s)	277, 407
FatI	CATG	2 cut(s)	273, 403
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	3 cut(s)	572, 599, 614
FriOI	GRGCYC	1 cut(s)	637
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	720
GluI	GCNGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	589
Hin1II	CATG	2 cut(s)	277, 407
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	3 cut(s)	351, 396, 486
HphI	GGTGA	3 cut(s)	163, 491, 708
Hpy166II	GTNNAC	3 cut(s)	33, 282, 725
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	8 cut(s)	55, 122, 146, 355, 368, 459, 509, 557
Hpy8I	GTNNAC	3 cut(s)	33, 282, 725
HpyAV	CCTTC	2 cut(s)	465, 578
HpyCH4III	ACNGT	1 cut(s)	421
HpyCH4V	TGCA	6 cut(s)	4, 94, 385, 467, 698, 725
HpyF3I	CTNAG	1 cut(s)	356
Hsp92II	CATG	2 cut(s)	277, 407
Kzo9I	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
LmnI	GCTCC	2 cut(s)	124, 135
Lsp1109I	GCAGC	1 cut(s)	219
LweI	GCATC	2 cut(s)	685, 730
MaeI	CTAG	1 cut(s)	720
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	6 cut(s)	27, 66, 413, 483, 507, 549
MbiI	CCGCTC	1 cut(s)	130
MboI	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
MboII	GAAGA	2 cut(s)	233, 344
MfeI	CAATTG	1 cut(s)	239
MflI	RGATCY	2 cut(s)	25, 411
MhlI	GDGCHC	2 cut(s)	637, 727
MluCI	AATT	5 cut(s)	11, 137, 239, 378, 621
MmeI	TCCRAC	2 cut(s)	328, 733
MnlI	CCTC	6 cut(s)	16, 79, 93, 164, 574, 592
MroXI	GAANNNNTTC	2 cut(s)	201, 336
MseI	TTAA	1 cut(s)	141
MslI	CAYNNNNRTG	2 cut(s)	319, 642
MunI	CAATTG	1 cut(s)	239
MvnI	CGCG	1 cut(s)	147
NdeII	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
NlaIII	CATG	2 cut(s)	277, 407
NlaIV	GGNNCC	4 cut(s)	27, 120, 271, 390
NruI	TCGCGA	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	481
PdmI	GAANNNNTTC	2 cut(s)	201, 336
PfeI	GAWTC	3 cut(s)	351, 396, 486
PkrI	GCNGC	1 cut(s)	209
PspN4I	GGNNCC	4 cut(s)	27, 120, 271, 390
PspPI	GGNCC	1 cut(s)	587
PsrI	GAACNNNNNNTAC	2 cut(s)	117, 149
PsuI	RGATCY	2 cut(s)	25, 411
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
RseI	CAYNNNNRTG	2 cut(s)	319, 642
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	6 cut(s)	25, 64, 411, 481, 505, 547
Sau96I	GGNCC	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	637, 727
SetI	ASST	9 cut(s)	156, 176, 287, 330, 390, 427, 528, 679, 721
SfaNI	GCATC	2 cut(s)	685, 730
SfcI	CTRYAG	2 cut(s)	72, 420
SmiMI	CAYNNNNRTG	2 cut(s)	319, 642
Sse9I	AATT	5 cut(s)	11, 137, 239, 378, 621
SsiI	CCGC	1 cut(s)	128
SspI	AATATT	1 cut(s)	61
SspMI	CTAG	1 cut(s)	720
TaaI	ACNGT	1 cut(s)	421
TaqI	TCGA	3 cut(s)	21, 484, 546
TasI	AATT	5 cut(s)	11, 137, 239, 378, 621
TfiI	GAWTC	3 cut(s)	351, 396, 486
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	2 cut(s)	424, 697
TseI	GCWGC	1 cut(s)	207
TspDTI	ATGAA	2 cut(s)	576, 670
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	2 cut(s)	424, 697
VneI	GTGCAC	1 cut(s)	723
XmnI	GAANNNNTTC	2 cut(s)	201, 336
XspI	CTAG	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.