Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005500

Physical Location & Seq

Genomic Coordinates Forward (+)

5100541 .. 5102320

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G005420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCAGGCTTGATAATGGTCTCTCTTACTATGTTCGTTGCAATTCTAAGCCCAAAATTTGAGCAGCTCTTGCCCTTGCTGTTAAAGTCGGTTTTGGAAGAGGAGGAAGAACGAGGAGTTGCCCGCATTGTTGAGCATCTTGCTTTCAGTGCTACTCAGAATTACACGAATCATGATATAGTCAGATTTCTTGAAAGTATCGGGGCAGAATTTGGCGCTTGCCAGAATGCAGTGACATCGGCTGGTGACACTGTTTACGAGTTATTTGTACCCGTTGACAAGCTTGAACTCTTATCTGAGGCCATTTCTGTCTTGGCGGAATTCAGTTCTGAGATTCGTGTCTCAAAAGACGACGTGGAAAGAGAAAGAGGCGCGTTTATGGAAGAGTACAGAGGGAATCGAAACGCTATGGGAAGGATGCAGGATGCACATTGGCTTTTGATGATGGCTGGTTCAAAGTATGCTGAGCGTTTACCTATTGGATCAGAAAAGGTAATTCGAACTGTTTCTCCTGAGACTGTGAAGCAATTTTATCAGAAGTGGTACCATTTTAGCAATATGGCAGTGATAGCTGTAGGAGATTTCCCTGATACTGAGACTGTAGTTGAGTCGATAAAGAATCAATTTGGGCATAAAAGTTCTGCACCTGAGCGTCCACTTATACCAACATATCAAGTTCCATCTCATGAAGAGCCACGTTATTCTTGTTTCATTGACTCTGAGGCAACTGGGGTTAATACAGGAATAAATCTTAATATCGTTTGTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

257

Amino Acids

28.82

Weight (kDa)

4.95

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	30 - 131	8.8e-16	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	169 - 232	3.6e-08	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56730
fragaria_vesca	FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790
malus_domestica	MD15G1202300.v1.1
prunus_persica	Prupe.7G214900_v2.0.a1
pyrus_communis	pycom02g05670 pycom15g17970
rosa_chinensis	RchiOBHm_Chr2g0091871 RchiOBHm_Chr2g0091891 RchiOBHm_Chr2g0092561
rosa_laevigata	RLG00000016323
rosa_multiflora	Rmu_sc0004296.1_g000004 Rmu_sc0010910.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148970
rosa_rugosa	Rorug02G0027600
rosa_samantha	Rh2AG066800 Rh2AG067000 Rh2AG073400 Rh2BG066000 Rh2BG074300 Rh2CG067400 Rh2CG075400 Rh2DG065700 Rh2DG072500
rosa_wichuraiana	Rw2G005420 Rw2G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	543
AccB1I	GGYRCC	1 cut(s)	543
AccII	CGCG	1 cut(s)	374
AciI	CCGC	2 cut(s)	124, 317
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	3 cut(s)	56, 209, 320
AfaI	GTAC	3 cut(s)	270, 389, 545
AgsI	TTSAA	3 cut(s)	194, 287, 456
AjiI	CACGTC	1 cut(s)	355
AloI	GAACNNNNNNTCC	2 cut(s)	493, 525
AluBI	AGCT	3 cut(s)	67, 283, 572
AluI	AGCT	3 cut(s)	67, 283, 572
Alw26I	GTCTC	4 cut(s)	25, 346, 509, 590
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	1 cut(s)	64
ApoI	RAATTY	3 cut(s)	56, 209, 320
Asp700I	GAANNNNTTC	1 cut(s)	505
Asp718I	GGTACC	1 cut(s)	543
AspLEI	GCGC	2 cut(s)	218, 374
AsuHPI	GGTGA	1 cut(s)	257
AsuII	TTCGAA	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	543
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	439, 688
BcgI	CGANNNNNNTGC	2 cut(s)	219, 253
BcoDI	GTCTC	4 cut(s)	25, 346, 509, 590
BfmI	CTRYAG	2 cut(s)	573, 600
BfoI	RGCGCY	1 cut(s)	219
BisI	GCNGC	1 cut(s)	65
BlpI	GCTNAGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	66
BmgBI	CACGTC	1 cut(s)	355
BmiI	GGNNCC	1 cut(s)	545
BmrI	ACTGGG	1 cut(s)	738
BmsI	GCATC	3 cut(s)	145, 408, 415
BmuI	ACTGGG	1 cut(s)	738
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	1 cut(s)	465
Bpu14I	TTCGAA	1 cut(s)	499
BsaI	GGTCTC	1 cut(s)	25
BsaXI	ACNNNNNCTCC	2 cut(s)	493, 523
Bse1I	ACTGG	1 cut(s)	733
BseGI	GGATG	2 cut(s)	423, 430
BseMII	CTCAG	8 cut(s)	170, 288, 321, 456, 504, 585, 639, 711
BseNI	ACTGG	1 cut(s)	733
BseRI	GAGGAG	2 cut(s)	116, 129
BseXI	GCAGC	1 cut(s)	76
BsgI	GTGCAG	1 cut(s)	627
Bsh1236I	CGCG	1 cut(s)	374
BshFI	GGCC	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	543
BsmAI	GTCTC	4 cut(s)	25, 346, 509, 590
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	1 cut(s)	302
Bso31I	GGTCTC	1 cut(s)	25
Bsp119I	TTCGAA	1 cut(s)	499
Bsp143I	GATC	1 cut(s)	482
Bsp1720I	GCTNAGC	1 cut(s)	465
BspACI	CCGC	2 cut(s)	124, 317
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	8 cut(s)	169, 289, 322, 457, 505, 586, 640, 712
BspFNI	CGCG	1 cut(s)	374
BspHI	TCATGA	2 cut(s)	172, 685
BspLI	GGNNCC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	684
BspT104I	TTCGAA	1 cut(s)	499
BspT107I	GGYRCC	1 cut(s)	543
BspTNI	GGTCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	733
BssMI	GATC	1 cut(s)	482
Bst4CI	ACNGT	4 cut(s)	253, 505, 520, 601
Bst6I	CTCTTC	3 cut(s)	93, 378, 684
BstAPI	GCANNNNNTGC	1 cut(s)	70
BstBI	TTCGAA	1 cut(s)	499
BstC8I	GCNNGC	3 cut(s)	7, 124, 220
BstDEI	CTNAG	9 cut(s)	47, 156, 297, 330, 465, 513, 594, 648, 720
BstF5I	GGATG	2 cut(s)	423, 430
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	218, 374
BstKTI	GATC	1 cut(s)	485
BstMAI	GTCTC	4 cut(s)	25, 346, 509, 590
BstMBI	GATC	1 cut(s)	482
BstMWI	GCNNNNNNNGC	3 cut(s)	70, 149, 569
BstSFI	CTRYAG	2 cut(s)	573, 600
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	1 cut(s)	76
BsuRI	GGCC	1 cut(s)	302
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	2 cut(s)	423, 430
BtsI	GCAGTG	2 cut(s)	237, 570
BtsIMutI	CAGTG	4 cut(s)	154, 237, 249, 570
Cac8I	GCNNGC	3 cut(s)	7, 124, 220
CciI	TCATGA	2 cut(s)	172, 685
CfoI	GCGC	2 cut(s)	218, 374
CseI	GACGC	1 cut(s)	641
Csp6I	GTAC	3 cut(s)	269, 388, 544
CviAII	CATG	2 cut(s)	173, 686
CviQI	GTAC	3 cut(s)	269, 388, 544
DdeI	CTNAG	9 cut(s)	47, 156, 297, 330, 465, 513, 594, 648, 720
DpnI	GATC	1 cut(s)	484
DpnII	GATC	1 cut(s)	482
Eam1104I	CTCTTC	3 cut(s)	93, 378, 684
EarI	CTCTTC	3 cut(s)	93, 378, 684
EciI	GGCGGA	1 cut(s)	332
Eco31I	GGTCTC	1 cut(s)	25
EcoRI	GAATTC	1 cut(s)	320
FaeI	CATG	2 cut(s)	176, 689
FatI	CATG	2 cut(s)	172, 685
FauI	CCCGC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	65
FokI	GGATG	2 cut(s)	430, 437
Fsp4HI	GCNGC	1 cut(s)	65
GlaI	GCGC	2 cut(s)	217, 373
GluI	GCNGC	1 cut(s)	65
HaeII	RGCGCY	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	302
HgaI	GACGC	1 cut(s)	641
HhaI	GCGC	2 cut(s)	218, 374
Hin1II	CATG	2 cut(s)	176, 689
Hin6I	GCGC	2 cut(s)	216, 372
HinP1I	GCGC	2 cut(s)	216, 372
HincII	GTYRAC	1 cut(s)	277
HindII	GTYRAC	1 cut(s)	277
HindIII	AAGCTT	1 cut(s)	281
HinfI	GANTC	6 cut(s)	169, 334, 397, 608, 619, 716
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	4 cut(s)	256, 277, 473, 656
Hpy188I	TCNGA	7 cut(s)	159, 185, 298, 331, 487, 537, 721
Hpy188III	TCNNGA	4 cut(s)	173, 191, 512, 686
Hpy8I	GTNNAC	4 cut(s)	256, 277, 473, 656
Hpy99I	CGWCG	1 cut(s)	356
HpyAV	CCTTC	1 cut(s)	408
HpyCH4III	ACNGT	4 cut(s)	253, 505, 520, 601
HpyCH4IV	ACGT	2 cut(s)	354, 697
HpyCH4V	TGCA	5 cut(s)	41, 230, 421, 428, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	70, 149, 569
HpyF3I	CTNAG	9 cut(s)	47, 156, 297, 330, 465, 513, 594, 648, 720
HpySE526I	ACGT	2 cut(s)	354, 697
Hsp92II	CATG	2 cut(s)	176, 689
HspAI	GCGC	2 cut(s)	216, 372
KpnI	GGTACC	1 cut(s)	547
Kzo9I	GATC	1 cut(s)	482
LguI	GCTCTTC	1 cut(s)	684
LpnPI	CCDG	9 cut(s)	228, 236, 407, 435, 525, 600, 660, 714, 726
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	3 cut(s)	145, 408, 415
MaeII	ACGT	2 cut(s)	354, 697
MaeIII	GTNAC	2 cut(s)	232, 245
MalI	GATC	1 cut(s)	484
MboI	GATC	1 cut(s)	482
MboII	GAAGA	4 cut(s)	110, 119, 395, 701
MfeI	CAATTG	1 cut(s)	769
MluCI	AATT	9 cut(s)	42, 56, 160, 209, 320, 495, 527, 623, 769
MlyI	GAGTC	2 cut(s)	617, 710
MnlI	CCTC	7 cut(s)	94, 97, 107, 292, 362, 386, 715
MroXI	GAANNNNTTC	1 cut(s)	505
MseI	TTAA	3 cut(s)	83, 735, 753
MunI	CAATTG	1 cut(s)	769
Mva1269I	GAATGC	1 cut(s)	232
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	70, 149, 569
NdeII	GATC	1 cut(s)	482
NlaIII	CATG	2 cut(s)	176, 689
NlaIV	GGNNCC	1 cut(s)	545
NmuCI	GTSAC	2 cut(s)	232, 245
NspV	TTCGAA	1 cut(s)	499
PagI	TCATGA	2 cut(s)	172, 685
PciSI	GCTCTTC	1 cut(s)	684
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	505
PfeI	GAWTC	4 cut(s)	169, 334, 397, 619
PkrI	GCNGC	1 cut(s)	66
PleI	GAGTC	2 cut(s)	616, 710
PpsI	GAGTC	2 cut(s)	616, 710
PspN4I	GGNNCC	1 cut(s)	545
RsaI	GTAC	3 cut(s)	270, 389, 545
RsaNI	GTAC	3 cut(s)	269, 388, 544
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	3 cut(s)	83, 735, 753
SatI	GCNGC	1 cut(s)	65
Sau3AI	GATC	1 cut(s)	482
SchI	GAGTC	2 cut(s)	617, 710
SetI	ASST	8 cut(s)	69, 285, 357, 478, 495, 574, 649, 700
SfaNI	GCATC	3 cut(s)	145, 408, 415
SfcI	CTRYAG	2 cut(s)	573, 600
SfuI	TTCGAA	1 cut(s)	499
Sse9I	AATT	9 cut(s)	42, 56, 160, 209, 320, 495, 527, 623, 769
SsiI	CCGC	2 cut(s)	124, 317
TaaI	ACNGT	4 cut(s)	253, 505, 520, 601
TaiI	ACGT	2 cut(s)	357, 700
TaqI	TCGA	3 cut(s)	400, 499, 611
TasI	AATT	9 cut(s)	42, 56, 160, 209, 320, 495, 527, 623, 769
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	169, 334, 397, 619
Tru1I	TTAA	3 cut(s)	83, 735, 753
Tru9I	TTAA	3 cut(s)	83, 735, 753
TscAI	CASTG	4 cut(s)	154, 237, 256, 570
TseFI	GTSAC	2 cut(s)	232, 245
TseI	GCWGC	1 cut(s)	64
Tsp45I	GTSAC	2 cut(s)	232, 245
TspDTI	ATGAA	2 cut(s)	700, 702
TspRI	CASTG	4 cut(s)	154, 237, 256, 570
XapI	RAATTY	3 cut(s)	56, 209, 320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.