RchiOBHm_Chr2g0091891

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0005500
Physical Location & Seq
Reverse (-)
5550065 .. 5551858
1794 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46706

Sequence Viewer

Length: 690 bp
ATGGATTTGCTTCCGGGAGGAAGTTCAAGCATGGTAAAGAAAACCGGGTTCAGGTCACTGAAGCTGGTGAACATAGAGATGGACCAAGTTCTGGGAGACAAGCCCGTCGGAGTTGACTATGGCAGGCTTGATAATGGTCTCTCTTACTATGTTCGTTGCAATTCTAAGCCCAAAATGAGAGCAGCTCTTGCCCTTGCTGTTAAAGTCGGGTCAGTTTTGGAAGAGGAGGAAGAACGAGGAGTTACCCGCATTGTTGAGCATCTTGCTTTCAGTGCTACTCAGAATTACACGAATCATGATATAGTCAGATTTCTTGAAAGTATCGGGGCAGAATTTGGCGCTTGCCAGAATGCAGTGACATCGGCTGGTGACACTGTTTACGAGTTATTTGTACCCGTTGACAAGCTTGAACTCTTATCTGAGGCCATTTCTGTCTTGGCGGAATTCAGTTCTGAGATTCGTGTCTCAAAAGACGACGTGGAAAGAGAAAGAGGCGCAGTTATGGAAGAGTACAGAGGGAATCGAAATGCTACGGGAAGGATGCAGGATGCACATTGGCTTTTGATGATGGCTGGTTCAAAGTATGCTGAGCGTTTACCTATTGGATTAGAAAAGGTAATTCGAACTGTTTCTCCTGAGACTGTGAAGCAATTTATCAGAAGTGGTACCATTTTAGCAATATGGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

229

Amino Acids

25.41

Weight (kDa)

5.56

Isoelectric Point (pI)

29.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M16 PF00675 54 - 172 1.2e-21 Insulinase (Peptidase family M16)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 104
Acc65I GGTACC 1 cut(s) 665
AccB1I GGYRCC 1 cut(s) 665
AccB7I CCANNNNNTGG 1 cut(s) 91
AciI CCGC 2 cut(s) 247, 440
AcsI RAATTY 2 cut(s) 332, 443
AcuI CTGAAG 1 cut(s) 80
AfaI GTAC 3 cut(s) 393, 512, 667
AfiI CCNNNNNNNGG 2 cut(s) 51, 91
AgsI TTSAA 4 cut(s) 27, 317, 410, 579
AjiI CACGTC 1 cut(s) 478
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
AluBI AGCT 3 cut(s) 64, 185, 406
AluI AGCT 3 cut(s) 64, 185, 406
Alw26I GTCTC 4 cut(s) 90, 143, 469, 632
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 332, 443
Asp700I GAANNNNTTC 1 cut(s) 628
Asp718I GGTACC 1 cut(s) 665
AspLEI GCGC 2 cut(s) 341, 497
AspS9I GGNCC 1 cut(s) 82
AsuC2I CCSGG 2 cut(s) 15, 46
AsuHPI GGTGA 2 cut(s) 79, 380
AsuII TTCGAA 1 cut(s) 622
AvaII GGWCC 1 cut(s) 82
BanI GGYRCC 1 cut(s) 665
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 73, 562
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BcnI CCSGG 2 cut(s) 15, 46
BcoDI GTCTC 4 cut(s) 90, 143, 469, 632
BfoI RGCGCY 1 cut(s) 342
BisI GCNGC 1 cut(s) 183
BlpI GCTNAGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 184
Bme1390I CCNGG 2 cut(s) 15, 46
Bme18I GGWCC 1 cut(s) 82
BmgBI CACGTC 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 82
BmiI GGNNCC 1 cut(s) 667
BmrFI CCNGG 2 cut(s) 15, 46
BmsI GCATC 3 cut(s) 268, 531, 538
BplI GAGNNNNNCTC 2 cut(s) 169, 201
Bpu1102I GCTNAGC 1 cut(s) 588
Bpu14I TTCGAA 1 cut(s) 622
BpuMI CCSGG 2 cut(s) 15, 46
BsaI GGTCTC 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 51, 91
BseGI GGATG 2 cut(s) 546, 553
BseLI CCNNNNNNNGG 2 cut(s) 51, 91
BseMII CTCAG 5 cut(s) 293, 411, 444, 579, 627
BseRI GAGGAG 2 cut(s) 239, 252
BseXI GCAGC 1 cut(s) 194
BshFI GGCC 1 cut(s) 425
BshNI GGYRCC 1 cut(s) 665
BsiSI CCGG 2 cut(s) 14, 45
BslI CCNNNNNNNGG 2 cut(s) 51, 91
BsmAI GTCTC 4 cut(s) 90, 143, 469, 632
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 1 cut(s) 425
Bso31I GGTCTC 1 cut(s) 143
Bsp119I TTCGAA 1 cut(s) 622
Bsp1720I GCTNAGC 1 cut(s) 588
BspACI CCGC 2 cut(s) 247, 440
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 5 cut(s) 292, 412, 445, 580, 628
BspHI TCATGA 1 cut(s) 295
BspLI GGNNCC 1 cut(s) 667
BspT104I TTCGAA 1 cut(s) 622
BspT107I GGYRCC 1 cut(s) 665
BspTNI GGTCTC 1 cut(s) 143
Bst4CI ACNGT 3 cut(s) 376, 628, 643
Bst6I CTCTTC 2 cut(s) 216, 501
BstAPI GCANNNNNTGC 1 cut(s) 188
BstBI TTCGAA 1 cut(s) 622
BstC8I GCNNGC 2 cut(s) 125, 343
BstDEI CTNAG 6 cut(s) 165, 279, 420, 453, 588, 636
BstF5I GGATG 2 cut(s) 546, 553
BstH2I RGCGCY 1 cut(s) 342
BstHHI GCGC 2 cut(s) 341, 497
BstMAI GTCTC 4 cut(s) 90, 143, 469, 632
BstMWI GCNNNNNNNGC 2 cut(s) 188, 272
BstSCI CCNGG 2 cut(s) 13, 44
BstV1I GCAGC 1 cut(s) 194
BsuRI GGCC 1 cut(s) 425
BtrI CACGTC 1 cut(s) 478
BtsCI GGATG 2 cut(s) 546, 553
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 4 cut(s) 56, 277, 360, 372
Cac8I GCNNGC 2 cut(s) 125, 343
CciI TCATGA 1 cut(s) 295
CfoI GCGC 2 cut(s) 341, 497
Cfr13I GGNCC 1 cut(s) 82
Csp6I GTAC 3 cut(s) 392, 511, 666
CviAII CATG 2 cut(s) 31, 296
CviQI GTAC 3 cut(s) 392, 511, 666
DdeI CTNAG 6 cut(s) 165, 279, 420, 453, 588, 636
DrdI GACNNNNNNGTC 1 cut(s) 104
DseDI GACNNNNNNGTC 1 cut(s) 104
Eam1104I CTCTTC 2 cut(s) 216, 501
EarI CTCTTC 2 cut(s) 216, 501
EciI GGCGGA 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 82
Eco57I CTGAAG 1 cut(s) 80
EcoRI GAATTC 1 cut(s) 443
FaeI CATG 2 cut(s) 34, 299
FaiI YATR 9 cut(s) 32, 74, 120, 150, 297, 302, 503, 585, 682
FatI CATG 2 cut(s) 30, 295
FauI CCCGC 1 cut(s) 254
Fnu4HI GCNGC 1 cut(s) 183
FokI GGATG 2 cut(s) 553, 560
Fsp4HI GCNGC 1 cut(s) 183
GlaI GCGC 2 cut(s) 340, 496
GluI GCNGC 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 342
HaeIII GGCC 1 cut(s) 425
HapII CCGG 2 cut(s) 14, 45
HhaI GCGC 2 cut(s) 341, 497
Hin1II CATG 2 cut(s) 34, 299
Hin6I GCGC 2 cut(s) 339, 495
HinP1I GCGC 2 cut(s) 339, 495
HincII GTYRAC 2 cut(s) 115, 400
HindII GTYRAC 2 cut(s) 115, 400
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 3 cut(s) 292, 457, 520
HpaII CCGG 2 cut(s) 14, 45
HphI GGTGA 2 cut(s) 79, 380
Hpy166II GTNNAC 5 cut(s) 70, 115, 379, 400, 596
Hpy188I TCNGA 6 cut(s) 110, 282, 308, 421, 454, 659
Hpy188III TCNNGA 3 cut(s) 296, 314, 635
Hpy8I GTNNAC 5 cut(s) 70, 115, 379, 400, 596
Hpy99I CGWCG 2 cut(s) 110, 479
HpyAV CCTTC 1 cut(s) 531
HpyCH4III ACNGT 3 cut(s) 376, 628, 643
HpyCH4IV ACGT 1 cut(s) 477
HpyCH4V TGCA 4 cut(s) 159, 353, 544, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 272
HpyF3I CTNAG 6 cut(s) 165, 279, 420, 453, 588, 636
HpySE526I ACGT 1 cut(s) 477
Hsp92II CATG 2 cut(s) 34, 299
HspAI GCGC 2 cut(s) 339, 495
KpnI GGTACC 1 cut(s) 669
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 3 cut(s) 268, 531, 538
MaeII ACGT 1 cut(s) 477
MaeIII GTNAC 4 cut(s) 54, 241, 355, 368
MboII GAAGA 3 cut(s) 233, 242, 518
MluCI AATT 6 cut(s) 160, 283, 332, 443, 618, 650
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 7 cut(s) 11, 217, 220, 230, 415, 485, 509
MroXI GAANNNNTTC 1 cut(s) 628
MseI TTAA 1 cut(s) 201
MslI CAYNNNNRTG 1 cut(s) 77
MspI CCGG 2 cut(s) 14, 45
MspR9I CCNGG 2 cut(s) 15, 46
Mva1269I GAATGC 1 cut(s) 355
MwoI GCNNNNNNNGC 2 cut(s) 188, 272
NciI CCSGG 2 cut(s) 15, 46
NlaIII CATG 2 cut(s) 34, 299
NlaIV GGNNCC 1 cut(s) 667
NmuCI GTSAC 3 cut(s) 54, 355, 368
NspV TTCGAA 1 cut(s) 622
PagI TCATGA 1 cut(s) 295
PctI GAATGC 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 628
PfeI GAWTC 3 cut(s) 292, 457, 520
PflMI CCANNNNNTGG 1 cut(s) 91
PfoI TCCNGGA 1 cut(s) 13
PkrI GCNGC 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 667
PspPI GGNCC 1 cut(s) 82
RsaI GTAC 3 cut(s) 393, 512, 667
RsaNI GTAC 3 cut(s) 392, 511, 666
RseI CAYNNNNRTG 1 cut(s) 77
SaqAI TTAA 1 cut(s) 201
SatI GCNGC 1 cut(s) 183
Sau96I GGNCC 1 cut(s) 82
ScrFI CCNGG 2 cut(s) 15, 46
SetI ASST 7 cut(s) 56, 66, 187, 408, 480, 601, 618
SfaNI GCATC 3 cut(s) 268, 531, 538
SfuI TTCGAA 1 cut(s) 622
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 77
Sse9I AATT 6 cut(s) 160, 283, 332, 443, 618, 650
SsiI CCGC 2 cut(s) 247, 440
StyD4I CCNGG 2 cut(s) 13, 44
TaaI ACNGT 3 cut(s) 376, 628, 643
TaiI ACGT 1 cut(s) 480
TaqI TCGA 2 cut(s) 523, 622
TasI AATT 6 cut(s) 160, 283, 332, 443, 618, 650
TatI WGTACW 1 cut(s) 510
TfiI GAWTC 3 cut(s) 292, 457, 520
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 4 cut(s) 63, 277, 360, 379
TseFI GTSAC 3 cut(s) 54, 355, 368
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 3 cut(s) 54, 355, 368
TspRI CASTG 4 cut(s) 63, 277, 360, 379
Van91I CCANNNNNTGG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 82
XapI RAATTY 2 cut(s) 332, 443
XcmI CCANNNNNNNNNTGG 1 cut(s) 433
XmnI GAANNNNTTC 1 cut(s) 628
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.