Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005500

Physical Location & Seq

Genomic Coordinates Reverse (-)

5577605 .. 5580188

Gene Structure 2584 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG067000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGACTCCCAAGCCGGAACCATGATGCTGGATCTTGGTTCATTCTCCGACGAGAACTTCGACTGGAAGAAATCAGTTTTGGAAGAGGAGGAAGAACGAGGAGTTGCCCGCATTGTTGAGCATCTTGCTTTCAGTGCTACTCAGAATTACACGAATCATGATATAGTCAGATTTCTTGAAAGTATCGGGGCAGAATTTGGCGCTTGCCAGAATGCAGTGACATCGGCTGGTGACACTGTTTACGAGTTATTTGTACCCGTTGACAAGCTTGAACTCTTATCTGAGGCCATTTCTGTCTTGGCGGAATTCAGTTCTGAGATTCGTGTCTCAAAAGACGACGTGGAAAGAGAAAGAGGCGCGGATATGGAAGAGTACAGAGGGAATCGAAACGCTACGGGAAGGATGCAGGATGCACATTGGCTTTTGATGATGGCTGGTTCAAAGTATGCTGAGTGTTTACGTATTGGATTAGAAAAGGTAATTCGAACTGTTTCTCCTGAGACTGTGAAGCAATTTTATCAGAAGTGGTACCATTTTAGCAATATGGCAGTGATAGCTGTAGGAGATTTCCCTGATACTGAGACTGTAGTTGAGTCGATAAAGAATCAATTTGGGCATAAAAGTTCTGCACCTGAGCGTCCACTTATACCAACATATCAAGTTCCATCTCATGAAGAGCCACGTTATTCTTGTTTTATTGACTCTGAGGCAACTGGGGTTAATACAGGAATAAATCTTAATATCGTTTGTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

252

Amino Acids

28.33

Weight (kDa)

4.7

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	25 - 125	2.5e-15	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	164 - 227	3.4e-08	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56730
fragaria_vesca	FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790
malus_domestica	MD15G1202300.v1.1
prunus_persica	Prupe.7G214900_v2.0.a1
pyrus_communis	pycom02g05670 pycom15g17970
rosa_chinensis	RchiOBHm_Chr2g0091871 RchiOBHm_Chr2g0091891 RchiOBHm_Chr2g0092561
rosa_laevigata	RLG00000016323
rosa_multiflora	Rmu_sc0004296.1_g000004 Rmu_sc0010910.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148970
rosa_rugosa	Rorug02G0027600
rosa_samantha	Rh2AG066800 Rh2AG067000 Rh2AG073400 Rh2BG066000 Rh2BG074300 Rh2CG067400 Rh2CG075400 Rh2DG065700 Rh2DG072500
rosa_wichuraiana	Rw2G005420 Rw2G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	528
AccII	CGCG	1 cut(s)	359
AciI	CCGC	3 cut(s)	109, 302, 359
AclWI	GGATC	1 cut(s)	39
AcsI	RAATTY	2 cut(s)	194, 305
AfaI	GTAC	3 cut(s)	255, 374, 530
AgsI	TTSAA	3 cut(s)	179, 272, 441
AjiI	CACGTC	1 cut(s)	340
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	478, 510
AluBI	AGCT	2 cut(s)	268, 557
AluI	AGCT	2 cut(s)	268, 557
Alw26I	GTCTC	3 cut(s)	331, 494, 575
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	285
ApoI	RAATTY	2 cut(s)	194, 305
ArsI	GACNNNNNNTTYG	2 cut(s)	41, 73
Asp700I	GAANNNNTTC	1 cut(s)	490
Asp718I	GGTACC	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	203, 359
AsuHPI	GGTGA	1 cut(s)	242
AsuII	TTCGAA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	528
BccI	CCATC	2 cut(s)	424, 673
BcgI	CGANNNNNNTGC	2 cut(s)	204, 238
BcoDI	GTCTC	3 cut(s)	331, 494, 575
BfmI	CTRYAG	2 cut(s)	558, 585
BfoI	RGCGCY	1 cut(s)	204
BmgBI	CACGTC	1 cut(s)	340
BmiI	GGNNCC	2 cut(s)	19, 530
BmrI	ACTGGG	1 cut(s)	723
BmsI	GCATC	4 cut(s)	15, 130, 393, 400
BmuI	ACTGGG	1 cut(s)	723
Bpu10I	CCTNAGC	1 cut(s)	633
Bpu14I	TTCGAA	1 cut(s)	484
BsaAI	YACGTR	1 cut(s)	461
BsaXI	ACNNNNNCTCC	2 cut(s)	478, 508
Bse1I	ACTGG	2 cut(s)	68, 718
BseGI	GGATG	2 cut(s)	408, 415
BseMII	CTCAG	8 cut(s)	155, 273, 306, 441, 489, 570, 624, 696
BseNI	ACTGG	2 cut(s)	68, 718
BseRI	GAGGAG	2 cut(s)	101, 114
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	15
BsmAI	GTCTC	3 cut(s)	331, 494, 575
BsmI	GAATGC	1 cut(s)	217
BsnI	GGCC	1 cut(s)	287
Bsp119I	TTCGAA	1 cut(s)	484
Bsp143I	GATC	1 cut(s)	31
BspACI	CCGC	3 cut(s)	109, 302, 359
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	8 cut(s)	154, 274, 307, 442, 490, 571, 625, 697
BspFNI	CGCG	1 cut(s)	359
BspHI	TCATGA	2 cut(s)	157, 670
BspLI	GGNNCC	2 cut(s)	19, 530
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	669
BspT104I	TTCGAA	1 cut(s)	484
BspT107I	GGYRCC	1 cut(s)	528
BsrI	ACTGG	2 cut(s)	68, 718
BssMI	GATC	1 cut(s)	31
Bst4CI	ACNGT	4 cut(s)	238, 490, 505, 586
Bst6I	CTCTTC	3 cut(s)	78, 363, 669
BstBAI	YACGTR	1 cut(s)	461
BstBI	TTCGAA	1 cut(s)	484
BstC8I	GCNNGC	2 cut(s)	109, 205
BstDEI	CTNAG	8 cut(s)	141, 282, 315, 450, 498, 579, 633, 705
BstF5I	GGATG	2 cut(s)	408, 415
BstFNI	CGCG	1 cut(s)	359
BstH2I	RGCGCY	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	203, 359
BstKTI	GATC	1 cut(s)	34
BstMAI	GTCTC	3 cut(s)	331, 494, 575
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 554
BstSFI	CTRYAG	2 cut(s)	558, 585
BstSNI	TACGTA	1 cut(s)	461
BstUI	CGCG	1 cut(s)	359
BstX2I	RGATCY	1 cut(s)	31
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	31
BsuRI	GGCC	1 cut(s)	287
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	408, 415
BtsI	GCAGTG	2 cut(s)	222, 555
BtsIMutI	CAGTG	4 cut(s)	139, 222, 234, 555
Cac8I	GCNNGC	2 cut(s)	109, 205
CciI	TCATGA	2 cut(s)	157, 670
CfoI	GCGC	2 cut(s)	203, 359
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	3 cut(s)	254, 373, 529
CviAII	CATG	3 cut(s)	22, 158, 671
CviJI	RGCY	8 cut(s)	14, 227, 268, 287, 421, 434, 557, 679
CviKI_1	RGCY	8 cut(s)	14, 227, 268, 287, 421, 434, 557, 679
CviQI	GTAC	3 cut(s)	254, 373, 529
DdeI	CTNAG	8 cut(s)	141, 282, 315, 450, 498, 579, 633, 705
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	3 cut(s)	78, 363, 669
EarI	CTCTTC	3 cut(s)	78, 363, 669
EciI	GGCGGA	1 cut(s)	317
Eco105I	TACGTA	1 cut(s)	461
EcoRI	GAATTC	1 cut(s)	305
FaeI	CATG	3 cut(s)	25, 161, 674
FatI	CATG	3 cut(s)	21, 157, 670
FauI	CCCGC	1 cut(s)	116
FokI	GGATG	2 cut(s)	415, 422
GlaI	GCGC	2 cut(s)	202, 358
HaeII	RGCGCY	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	15
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	2 cut(s)	203, 359
Hin1II	CATG	3 cut(s)	25, 161, 674
Hin6I	GCGC	2 cut(s)	201, 357
HinP1I	GCGC	2 cut(s)	201, 357
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	7 cut(s)	5, 154, 319, 382, 593, 604, 701
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	4 cut(s)	241, 262, 458, 641
Hpy188I	TCNGA	7 cut(s)	49, 144, 170, 283, 316, 522, 706
Hpy188III	TCNNGA	4 cut(s)	158, 176, 497, 671
Hpy8I	GTNNAC	4 cut(s)	241, 262, 458, 641
Hpy99I	CGWCG	2 cut(s)	53, 341
HpyAV	CCTTC	1 cut(s)	393
HpyCH4III	ACNGT	4 cut(s)	238, 490, 505, 586
HpyCH4IV	ACGT	3 cut(s)	339, 460, 682
HpyCH4V	TGCA	4 cut(s)	215, 406, 413, 629
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 554
HpyF3I	CTNAG	8 cut(s)	141, 282, 315, 450, 498, 579, 633, 705
HpySE526I	ACGT	3 cut(s)	339, 460, 682
Hsp92II	CATG	3 cut(s)	25, 161, 674
HspAI	GCGC	2 cut(s)	201, 357
KpnI	GGTACC	1 cut(s)	532
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	669
LweI	GCATC	4 cut(s)	15, 130, 393, 400
MaeII	ACGT	3 cut(s)	339, 460, 682
MaeIII	GTNAC	2 cut(s)	217, 230
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	5 cut(s)	79, 95, 104, 380, 686
MfeI	CAATTG	1 cut(s)	754
MflI	RGATCY	1 cut(s)	31
MluCI	AATT	7 cut(s)	145, 194, 305, 480, 512, 608, 754
MlyI	GAGTC	2 cut(s)	602, 695
MmeI	TCCRAC	1 cut(s)	72
MnlI	CCTC	7 cut(s)	79, 82, 92, 277, 347, 371, 700
MroXI	GAANNNNTTC	1 cut(s)	490
MseI	TTAA	2 cut(s)	720, 738
MspI	CCGG	1 cut(s)	15
MunI	CAATTG	1 cut(s)	754
Mva1269I	GAATGC	1 cut(s)	217
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	134, 554
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	3 cut(s)	25, 161, 674
NlaIV	GGNNCC	2 cut(s)	19, 530
NmuCI	GTSAC	2 cut(s)	217, 230
NspV	TTCGAA	1 cut(s)	484
PagI	TCATGA	2 cut(s)	157, 670
PciSI	GCTCTTC	1 cut(s)	669
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	217
PdmI	GAANNNNTTC	1 cut(s)	490
PfeI	GAWTC	4 cut(s)	154, 319, 382, 604
PleI	GAGTC	2 cut(s)	601, 695
PpsI	GAGTC	2 cut(s)	601, 695
Ppu21I	YACGTR	1 cut(s)	461
PspN4I	GGNNCC	2 cut(s)	19, 530
PsuI	RGATCY	1 cut(s)	31
RsaI	GTAC	3 cut(s)	255, 374, 530
RsaNI	GTAC	3 cut(s)	254, 373, 529
SapI	GCTCTTC	1 cut(s)	669
SaqAI	TTAA	2 cut(s)	720, 738
Sau3AI	GATC	1 cut(s)	31
SchI	GAGTC	2 cut(s)	602, 695
SetI	ASST	7 cut(s)	270, 342, 463, 480, 559, 634, 685
SfaNI	GCATC	4 cut(s)	15, 130, 393, 400
SfcI	CTRYAG	2 cut(s)	558, 585
SfuI	TTCGAA	1 cut(s)	484
SnaBI	TACGTA	1 cut(s)	461
Sse9I	AATT	7 cut(s)	145, 194, 305, 480, 512, 608, 754
SsiI	CCGC	3 cut(s)	109, 302, 359
TaaI	ACNGT	4 cut(s)	238, 490, 505, 586
TaiI	ACGT	3 cut(s)	342, 463, 685
TaqI	TCGA	4 cut(s)	60, 385, 484, 596
TasI	AATT	7 cut(s)	145, 194, 305, 480, 512, 608, 754
TatI	WGTACW	1 cut(s)	372
TfiI	GAWTC	4 cut(s)	154, 319, 382, 604
Tru1I	TTAA	2 cut(s)	720, 738
Tru9I	TTAA	2 cut(s)	720, 738
TscAI	CASTG	4 cut(s)	139, 222, 241, 555
TseFI	GTSAC	2 cut(s)	217, 230
Tsp45I	GTSAC	2 cut(s)	217, 230
TspDTI	ATGAA	2 cut(s)	30, 687
TspRI	CASTG	4 cut(s)	139, 222, 241, 555
XapI	RAATTY	2 cut(s)	194, 305
XcmI	CCANNNNNNNNNTGG	1 cut(s)	295
XmnI	GAANNNNTTC	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.