Rh2AG066800

Belongs to the peptidase M16 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0005500
Physical Location & Seq
Reverse (-)
5575056 .. 5575992
937 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG066800.1

Sequence Viewer

Length: 411 bp
ATGGTATCTTCTACAAGTCTTAAATGCGATGACCTCACAGGACTGCCATTCACTTTTCCTAGAACCATAATAAGAGAAGTGGTACGCAGCCCTATGGTGGAAGAACAATGCTCTGTCCAGCTTTGCTTTCCTGTGGAGCTGAATAATGGAACCATGGTAGAAGATATTCACCATGGACAGATCTACACTGTGGGTGTTTCGGTATTTCTTGGCGGTAATAAGCCTTCCAGAACTGCTAATGTTCGTGGAGATATAAGCATAAATTTTTCTTGTGATCCAGAATATTTTCTTGGCGGTAAGAAGTTGAATTGCTTTTCACAGCGGCGAGTTGAATTTCAGGTGGAAGAGAGGAACTTACGGCTGACGGCGGTGGCGGAAGATGCGGCGGCAAAGAGTGGTCCGGCTATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

136

Amino Acids

15.0

Weight (kDa)

5.67

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 213, 294, 322, 368, 374, 383, 386
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 2 cut(s) 262, 332
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 97
AgsI TTSAA 2 cut(s) 307, 332
AjuI GAANNNNNNNTTGG 2 cut(s) 273, 305
AluBI AGCT 2 cut(s) 121, 139
AluI AGCT 2 cut(s) 121, 139
AlwI GGATC 1 cut(s) 269
ApeKI GCWGC 1 cut(s) 87
ApoI RAATTY 2 cut(s) 262, 332
Asp700I GAANNNNTTC 2 cut(s) 165, 285
AspS9I GGNCC 1 cut(s) 398
AsuHPI GGTGA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 398
BarI GAAGNNNNNNTAC 2 cut(s) 208, 240
BbvI GCAGC 1 cut(s) 99
BceAI ACGGC 2 cut(s) 374, 381
BfaI CTAG 1 cut(s) 60
BglII AGATCT 1 cut(s) 180
BisI GCNGC 4 cut(s) 88, 323, 384, 387
BlsI GCNGC 4 cut(s) 89, 324, 385, 388
Bme18I GGWCC 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 151
BmsI GCATC 1 cut(s) 370
BsaJI CCNNGG 2 cut(s) 153, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 153, 172
BseLI CCNNNNNNNGG 1 cut(s) 97
BseXI GCAGC 1 cut(s) 99
BsiSI CCGG 1 cut(s) 401
BslI CCNNNNNNNGG 1 cut(s) 97
Bsp143I GATC 2 cut(s) 180, 274
Bsp19I CCATGG 2 cut(s) 153, 172
BspACI CCGC 7 cut(s) 213, 294, 322, 368, 374, 383, 386
BspLI GGNNCC 1 cut(s) 151
BspPI GGATC 1 cut(s) 269
BssECI CCNNGG 2 cut(s) 153, 172
BssMI GATC 2 cut(s) 180, 274
BssT1I CCWWGG 2 cut(s) 153, 172
Bst4CI ACNGT 1 cut(s) 190
Bst6I CTCTTC 1 cut(s) 339
BstDSI CCRYGG 2 cut(s) 153, 172
BstKTI GATC 2 cut(s) 183, 277
BstMBI GATC 2 cut(s) 180, 274
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstV1I GCAGC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtgI CCRYGG 2 cut(s) 153, 172
BtgZI GCGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 186
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 83
CviAII CATG 2 cut(s) 154, 173
CviJI RGCY 6 cut(s) 90, 121, 139, 223, 361, 404
CviKI_1 RGCY 6 cut(s) 90, 121, 139, 223, 361, 404
CviQI GTAC 1 cut(s) 83
DpnI GATC 2 cut(s) 182, 276
DpnII GATC 2 cut(s) 180, 274
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
EciI GGCGGA 1 cut(s) 389
Eco130I CCWWGG 2 cut(s) 153, 172
Eco47I GGWCC 1 cut(s) 398
EcoT14I CCWWGG 2 cut(s) 153, 172
ErhI CCWWGG 2 cut(s) 153, 172
FaeI CATG 2 cut(s) 157, 176
FaiI YATR 8 cut(s) 68, 95, 155, 174, 254, 260, 407, 409
FatI CATG 2 cut(s) 153, 172
Fnu4HI GCNGC 4 cut(s) 88, 323, 384, 387
Fsp4HI GCNGC 4 cut(s) 88, 323, 384, 387
FspBI CTAG 1 cut(s) 60
GluI GCNGC 4 cut(s) 88, 323, 384, 387
HapII CCGG 1 cut(s) 401
Hin1II CATG 2 cut(s) 157, 176
HpaII CCGG 1 cut(s) 401
HphI GGTGA 1 cut(s) 161
Hpy188III TCNNGA 2 cut(s) 228, 278
HpyAV CCTTC 1 cut(s) 234
HpyCH4III ACNGT 1 cut(s) 190
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
Hsp92II CATG 2 cut(s) 157, 176
Kzo9I GATC 2 cut(s) 180, 274
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 6 cut(s) 24, 131, 144, 241, 291, 323
Lsp1109I GCAGC 1 cut(s) 99
LweI GCATC 1 cut(s) 370
MaeI CTAG 1 cut(s) 60
MalI GATC 2 cut(s) 182, 276
MboI GATC 2 cut(s) 180, 274
MboII GAAGA 4 cut(s) 113, 173, 356, 389
MflI RGATCY 1 cut(s) 180
MluCI AATT 3 cut(s) 262, 307, 332
MnlI CCTC 2 cut(s) 44, 342
MroXI GAANNNNTTC 2 cut(s) 165, 285
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 401
MwoI GCNNNNNNNGC 1 cut(s) 380
NcoI CCATGG 2 cut(s) 153, 172
NdeII GATC 2 cut(s) 180, 274
NlaIII CATG 2 cut(s) 157, 176
NlaIV GGNNCC 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 165, 285
PkrI GCNGC 4 cut(s) 89, 324, 385, 388
PspN4I GGNNCC 1 cut(s) 151
PspPI GGNCC 1 cut(s) 398
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 4 cut(s) 88, 323, 384, 387
Sau3AI GATC 2 cut(s) 180, 274
Sau96I GGNCC 1 cut(s) 398
SetI ASST 4 cut(s) 36, 123, 141, 342
SfaNI GCATC 1 cut(s) 370
SinI GGWCC 1 cut(s) 398
Sse9I AATT 3 cut(s) 262, 307, 332
SsiI CCGC 7 cut(s) 213, 294, 322, 368, 374, 383, 386
SspI AATATT 1 cut(s) 284
SspMI CTAG 1 cut(s) 60
StyI CCWWGG 2 cut(s) 153, 172
TaaI ACNGT 1 cut(s) 190
TasI AATT 3 cut(s) 262, 307, 332
TauI GCSGC 3 cut(s) 325, 386, 389
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 193
TseI GCWGC 1 cut(s) 87
TspRI CASTG 1 cut(s) 193
VpaK11BI GGWCC 1 cut(s) 398
XapI RAATTY 2 cut(s) 262, 332
XmnI GAANNNNTTC 2 cut(s) 165, 285
XspI CTAG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.