Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005500

Physical Location & Seq

Genomic Coordinates Reverse (-)

5604438 .. 5606293

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG067400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATTTGCTTCCGGGAGGAAGTTCAAGCATGGTAAAGAAAACCGGGTTCAGGTTACTGAAGCTGGTGAACATAGAGATGGACCAAGTTCTGGGAGACAAGCCCGTCGGAGTTGACTATGGCAGGCTTGATAATGGTCTCTCTTACTATGTTCGTTGCAATTCTAAGCCCAAAATGAGAGCAGCTCTTGCCCTTGCTGTTAAAGTCGGGTCAGTTTTGGAAGAGGAGGAAGAACGAGGAGTTGCCCGCATTGTTGAGCATCTTGCTTTCAGTGCTACTCAGAATTACACGAATCATGATATAGTCAGATTTCTTGAAAGTATCGGGGCAGAATTTGGCGCTTGCCAGAATGCAGTGACATCGGCTGGTGACACTGTTTACGAGTTATTTGTACCCGTTGACAAGCTTGAACTCTTATCTGAGGCCATTTCTGTCTTGGCGGAATTCAGTTCTGAGATTCGTGTCTCAAAAGACGACGTGGAAAGAGAAAGAGGCGCGGTTATGGAAGAGTACAGAGGGAATCGAAACGCTACGGGAAGGATGCAGGATGCACATTGGCTTTTGATGATGGCTGGTTCAAAGTATGCTGAGCGTTTACCTATTGGATTAGAAAAGGTAATTCGAACTGTTTCTCCTGAGACTGTGAAGCAATTTTATCAGAAGTGGTACCATTTTAGCAATATGGCAGTGATAGCTGTAGGAGATTTCCCTGATACTGAGACTGTAGTTGAGTCGATAAAGAATCAATTTGGGCATAAAAGTTCTGCACCTGAGCGTCCACTTATACCAACATATCAAGTTCCATCTCATGAAGAGCCATGTTATTCTTGTTTCATTGACTCTGAGGCAACTGGGGTTAATACAGGAATAAATCTTAATATCGTTTGTGTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PITH Peptidase_M16 Peptidase_M16_C

Protein Analysis

298

Amino Acids

33.08

Weight (kDa)

5.21

Isoelectric Point (pI)

31.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M16	PF00675	54 - 172	7e-22	Insulinase (Peptidase family M16)
Peptidase_M16_C	PF05193	210 - 269	8.4e-08	Peptidase M16 inactive domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005500)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56730
fragaria_vesca	FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790
malus_domestica	MD15G1202300.v1.1
prunus_persica	Prupe.7G214900_v2.0.a1
pyrus_communis	pycom02g05670 pycom15g17970
rosa_chinensis	RchiOBHm_Chr2g0091871 RchiOBHm_Chr2g0091891 RchiOBHm_Chr2g0092561
rosa_laevigata	RLG00000016323
rosa_multiflora	Rmu_sc0004296.1_g000004 Rmu_sc0010910.1_g000005
rosa_roxburghii	Rroxscaffold_2G00148970
rosa_rugosa	Rorug02G0027600
rosa_samantha	Rh2AG066800 Rh2AG067000 Rh2AG073400 Rh2BG066000 Rh2BG074300 Rh2CG067400 Rh2CG075400 Rh2DG065700 Rh2DG072500
rosa_wichuraiana	Rw2G005420 Rw2G005950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	104
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	1 cut(s)	666
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccII	CGCG	1 cut(s)	497
AciI	CCGC	3 cut(s)	247, 440, 497
AcsI	RAATTY	2 cut(s)	332, 443
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	3 cut(s)	393, 512, 668
AfiI	CCNNNNNNNGG	2 cut(s)	51, 91
AgsI	TTSAA	4 cut(s)	27, 317, 410, 579
AjiI	CACGTC	1 cut(s)	478
AloI	GAACNNNNNNTCC	2 cut(s)	616, 648
AluBI	AGCT	4 cut(s)	64, 185, 406, 695
AluI	AGCT	4 cut(s)	64, 185, 406, 695
Alw26I	GTCTC	5 cut(s)	90, 143, 469, 632, 713
AoxI	GGCC	1 cut(s)	423
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	332, 443
Asp700I	GAANNNNTTC	1 cut(s)	628
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	2 cut(s)	341, 497
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	2 cut(s)	15, 46
AsuHPI	GGTGA	2 cut(s)	79, 380
AsuII	TTCGAA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	82
BanI	GGYRCC	1 cut(s)	666
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	3 cut(s)	73, 562, 811
BcgI	CGANNNNNNTGC	2 cut(s)	342, 376
BcnI	CCSGG	2 cut(s)	15, 46
BcoDI	GTCTC	5 cut(s)	90, 143, 469, 632, 713
BfmI	CTRYAG	2 cut(s)	696, 723
BfoI	RGCGCY	1 cut(s)	342
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	2 cut(s)	15, 46
Bme18I	GGWCC	1 cut(s)	82
BmgBI	CACGTC	1 cut(s)	478
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	668
BmrFI	CCNGG	2 cut(s)	15, 46
BmrI	ACTGGG	1 cut(s)	861
BmsI	GCATC	3 cut(s)	268, 531, 538
BmuI	ACTGGG	1 cut(s)	861
BplI	GAGNNNNNCTC	2 cut(s)	169, 201
Bpu10I	CCTNAGC	1 cut(s)	771
Bpu1102I	GCTNAGC	1 cut(s)	588
Bpu14I	TTCGAA	1 cut(s)	622
BpuMI	CCSGG	2 cut(s)	15, 46
BsaI	GGTCTC	1 cut(s)	143
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 91
Bse1I	ACTGG	1 cut(s)	856
BseGI	GGATG	2 cut(s)	546, 553
BseLI	CCNNNNNNNGG	2 cut(s)	51, 91
BseMII	CTCAG	8 cut(s)	293, 411, 444, 579, 627, 708, 762, 834
BseNI	ACTGG	1 cut(s)	856
BseRI	GAGGAG	2 cut(s)	239, 252
BseXI	GCAGC	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	497
BshFI	GGCC	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	666
BsiSI	CCGG	2 cut(s)	14, 45
BslI	CCNNNNNNNGG	2 cut(s)	51, 91
BsmAI	GTCTC	5 cut(s)	90, 143, 469, 632, 713
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	1 cut(s)	425
Bso31I	GGTCTC	1 cut(s)	143
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1720I	GCTNAGC	1 cut(s)	588
BspACI	CCGC	3 cut(s)	247, 440, 497
BspANI	GGCC	1 cut(s)	425
BspCNI	CTCAG	8 cut(s)	292, 412, 445, 580, 628, 709, 763, 835
BspFNI	CGCG	1 cut(s)	497
BspHI	TCATGA	2 cut(s)	295, 808
BspLI	GGNNCC	1 cut(s)	668
BspQI	GCTCTTC	1 cut(s)	807
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	666
BspTNI	GGTCTC	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	856
Bst4CI	ACNGT	4 cut(s)	376, 628, 643, 724
Bst6I	CTCTTC	3 cut(s)	216, 501, 807
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	3 cut(s)	125, 247, 343
BstDEI	CTNAG	9 cut(s)	165, 279, 420, 453, 588, 636, 717, 771, 843
BstF5I	GGATG	2 cut(s)	546, 553
BstFNI	CGCG	1 cut(s)	497
BstH2I	RGCGCY	1 cut(s)	342
BstHHI	GCGC	2 cut(s)	341, 497
BstMAI	GTCTC	5 cut(s)	90, 143, 469, 632, 713
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 272, 692
BstSCI	CCNGG	2 cut(s)	13, 44
BstSFI	CTRYAG	2 cut(s)	696, 723
BstUI	CGCG	1 cut(s)	497
BstV1I	GCAGC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	425
BtrI	CACGTC	1 cut(s)	478
BtsCI	GGATG	2 cut(s)	546, 553
BtsI	GCAGTG	2 cut(s)	360, 693
BtsIMutI	CAGTG	4 cut(s)	277, 360, 372, 693
Cac8I	GCNNGC	3 cut(s)	125, 247, 343
CciI	TCATGA	2 cut(s)	295, 808
CfoI	GCGC	2 cut(s)	341, 497
Cfr13I	GGNCC	1 cut(s)	82
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	392, 511, 667
CviAII	CATG	4 cut(s)	31, 296, 809, 819
CviQI	GTAC	3 cut(s)	392, 511, 667
DdeI	CTNAG	9 cut(s)	165, 279, 420, 453, 588, 636, 717, 771, 843
DrdI	GACNNNNNNGTC	1 cut(s)	104
DseDI	GACNNNNNNGTC	1 cut(s)	104
Eam1104I	CTCTTC	3 cut(s)	216, 501, 807
EarI	CTCTTC	3 cut(s)	216, 501, 807
EciI	GGCGGA	1 cut(s)	455
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	1 cut(s)	80
EcoRI	GAATTC	1 cut(s)	443
FaeI	CATG	4 cut(s)	34, 299, 812, 822
FatI	CATG	4 cut(s)	30, 295, 808, 818
FauI	CCCGC	1 cut(s)	254
Fnu4HI	GCNGC	1 cut(s)	183
FokI	GGATG	2 cut(s)	553, 560
Fsp4HI	GCNGC	1 cut(s)	183
GlaI	GCGC	2 cut(s)	340, 496
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	425
HapII	CCGG	2 cut(s)	14, 45
HgaI	GACGC	1 cut(s)	764
HhaI	GCGC	2 cut(s)	341, 497
Hin1II	CATG	4 cut(s)	34, 299, 812, 822
Hin6I	GCGC	2 cut(s)	339, 495
HinP1I	GCGC	2 cut(s)	339, 495
HincII	GTYRAC	2 cut(s)	115, 400
HindII	GTYRAC	2 cut(s)	115, 400
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	6 cut(s)	292, 457, 520, 731, 742, 839
HpaII	CCGG	2 cut(s)	14, 45
HphI	GGTGA	2 cut(s)	79, 380
Hpy166II	GTNNAC	6 cut(s)	70, 115, 379, 400, 596, 779
Hpy188I	TCNGA	7 cut(s)	110, 282, 308, 421, 454, 660, 844
Hpy188III	TCNNGA	4 cut(s)	296, 314, 635, 809
Hpy8I	GTNNAC	6 cut(s)	70, 115, 379, 400, 596, 779
Hpy99I	CGWCG	2 cut(s)	110, 479
HpyAV	CCTTC	1 cut(s)	531
HpyCH4III	ACNGT	4 cut(s)	376, 628, 643, 724
HpyCH4IV	ACGT	1 cut(s)	477
HpyCH4V	TGCA	5 cut(s)	159, 353, 544, 551, 767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 272, 692
HpyF3I	CTNAG	9 cut(s)	165, 279, 420, 453, 588, 636, 717, 771, 843
HpySE526I	ACGT	1 cut(s)	477
Hsp92II	CATG	4 cut(s)	34, 299, 812, 822
HspAI	GCGC	2 cut(s)	339, 495
KpnI	GGTACC	1 cut(s)	670
LguI	GCTCTTC	1 cut(s)	807
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	3 cut(s)	268, 531, 538
MaeII	ACGT	1 cut(s)	477
MaeIII	GTNAC	3 cut(s)	54, 355, 368
MboII	GAAGA	4 cut(s)	233, 242, 518, 824
MfeI	CAATTG	1 cut(s)	892
MluCI	AATT	8 cut(s)	160, 283, 332, 443, 618, 650, 746, 892
MlyI	GAGTC	2 cut(s)	740, 833
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	11, 217, 220, 230, 415, 485, 509, 838
MroXI	GAANNNNTTC	1 cut(s)	628
MseI	TTAA	3 cut(s)	201, 858, 876
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	2 cut(s)	14, 45
MspR9I	CCNGG	2 cut(s)	15, 46
MunI	CAATTG	1 cut(s)	892
Mva1269I	GAATGC	1 cut(s)	355
MvnI	CGCG	1 cut(s)	497
MwoI	GCNNNNNNNGC	3 cut(s)	188, 272, 692
NciI	CCSGG	2 cut(s)	15, 46
NlaIII	CATG	4 cut(s)	34, 299, 812, 822
NlaIV	GGNNCC	1 cut(s)	668
NmuCI	GTSAC	2 cut(s)	355, 368
NspV	TTCGAA	1 cut(s)	622
PagI	TCATGA	2 cut(s)	295, 808
PciSI	GCTCTTC	1 cut(s)	807
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	1 cut(s)	628
PfeI	GAWTC	4 cut(s)	292, 457, 520, 742
PflMI	CCANNNNNTGG	1 cut(s)	91
PfoI	TCCNGGA	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	739, 833
PpsI	GAGTC	2 cut(s)	739, 833
PspN4I	GGNNCC	1 cut(s)	668
PspPI	GGNCC	1 cut(s)	82
RsaI	GTAC	3 cut(s)	393, 512, 668
RsaNI	GTAC	3 cut(s)	392, 511, 667
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	807
SaqAI	TTAA	3 cut(s)	201, 858, 876
SatI	GCNGC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	740, 833
ScrFI	CCNGG	2 cut(s)	15, 46
SetI	ASST	9 cut(s)	56, 66, 187, 408, 480, 601, 618, 697, 772
SfaNI	GCATC	3 cut(s)	268, 531, 538
SfcI	CTRYAG	2 cut(s)	696, 723
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	8 cut(s)	160, 283, 332, 443, 618, 650, 746, 892
SsiI	CCGC	3 cut(s)	247, 440, 497
StyD4I	CCNGG	2 cut(s)	13, 44
TaaI	ACNGT	4 cut(s)	376, 628, 643, 724
TaiI	ACGT	1 cut(s)	480
TaqI	TCGA	3 cut(s)	523, 622, 734
TasI	AATT	8 cut(s)	160, 283, 332, 443, 618, 650, 746, 892
TatI	WGTACW	1 cut(s)	510
TfiI	GAWTC	4 cut(s)	292, 457, 520, 742
Tru1I	TTAA	3 cut(s)	201, 858, 876
Tru9I	TTAA	3 cut(s)	201, 858, 876
TscAI	CASTG	4 cut(s)	277, 360, 379, 693
TseFI	GTSAC	2 cut(s)	355, 368
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	355, 368
TspDTI	ATGAA	2 cut(s)	823, 825
TspRI	CASTG	4 cut(s)	277, 360, 379, 693
Van91I	CCANNNNNTGG	1 cut(s)	91
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	332, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XmnI	GAANNNNTTC	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.