Belongs to the peptidase M16 family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G56730 |
| fragaria_vesca | FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 FvH4_1g06790 |
| malus_domestica | MD15G1202300.v1.1 |
| prunus_persica | Prupe.7G214900_v2.0.a1 |
| pyrus_communis | pycom02g05670 pycom15g17970 |
| rosa_chinensis | RchiOBHm_Chr2g0091871 RchiOBHm_Chr2g0091891 RchiOBHm_Chr2g0092561 |
| rosa_laevigata | RLG00000016323 |
| rosa_multiflora | Rmu_sc0004296.1_g000004 Rmu_sc0010910.1_g000005 |
| rosa_roxburghii | Rroxscaffold_2G00148970 |
| rosa_rugosa | Rorug02G0027600 |
| rosa_samantha | Rh2AG066800 Rh2AG067000 Rh2AG073400 Rh2BG066000 Rh2BG074300 Rh2CG067400 Rh2CG075400 Rh2DG065700 Rh2DG072500 |
| rosa_wichuraiana | Rw2G005420 Rw2G005950 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3138 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 74 |
| Acc16I | TGCGCA | 3 cut(s) | 597, 2339, 3211 |
| Acc65I | GGTACC | 1 cut(s) | 711 |
| AccB1I | GGYRCC | 2 cut(s) | 711, 5159 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 61 |
| AccI | GTMKAC | 3 cut(s) | 2613, 3111, 4347 |
| AccII | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| AcsI | RAATTY | 7 cut(s) | 377, 488, 2575, 2595, 4309, 4329, 4837 |
| AcuI | CTGAAG | 7 cut(s) | 50, 1788, 2090, 3537, 3839, 5160, 5168 |
| AflIII | ACRYGT | 1 cut(s) | 3097 |
| AhlI | ACTAGT | 1 cut(s) | 3316 |
| AjnI | CCWGG | 6 cut(s) | 1163, 1576, 1954, 3055, 3293, 3703 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 245, 277, 1305, 1337 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 661, 693 |
| Alw21I | GWGCWC | 2 cut(s) | 1501, 2980 |
| AoxI | GGCC | 8 cut(s) | 468, 1134, 1760, 2084, 2654, 3509, 3833, 4388 |
| ApeKI | GCWGC | 8 cut(s) | 152, 1376, 1419, 1591, 1918, 2340, 3340, 3667 |
| ApoI | RAATTY | 7 cut(s) | 377, 488, 2575, 2595, 4309, 4329, 4837 |
| Asp718I | GGTACC | 1 cut(s) | 711 |
| AspLEI | GCGC | 7 cut(s) | 386, 542, 598, 2340, 2857, 3212, 4591 |
| AsuC2I | CCSGG | 2 cut(s) | 16, 755 |
| AsuHPI | GGTGA | 7 cut(s) | 49, 1884, 1895, 3283, 3295, 3633, 3644 |
| AsuII | TTCGAA | 1 cut(s) | 667 |
| AvaII | GGWCC | 7 cut(s) | 52, 1836, 2002, 3130, 3585, 3751, 4822 |
| BaeGI | GKGCMC | 1 cut(s) | 5162 |
| BamHI | GGATCC | 4 cut(s) | 2020, 2158, 3769, 3907 |
| BanI | GGYRCC | 2 cut(s) | 711, 5159 |
| BanII | GRGCYC | 2 cut(s) | 2704, 4438 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2521, 2553, 4255, 4287 |
| BauI | CACGAG | 4 cut(s) | 1446, 1867, 2925, 3616 |
| BbsI | GAAGAC | 4 cut(s) | 1358, 2633, 3269, 4367 |
| Bbv12I | GWGCWC | 2 cut(s) | 1501, 2980 |
| BbvCI | CCTCAGC | 2 cut(s) | 2664, 4398 |
| BbvI | GCAGC | 8 cut(s) | 164, 1388, 1431, 1603, 1930, 2352, 3352, 3679 |
| BceAI | ACGGC | 3 cut(s) | 1187, 2868, 4602 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 387, 421, 2446, 2480, 4180, 4214 |
| BciT130I | CCWGG | 6 cut(s) | 1165, 1578, 1956, 3057, 3295, 3705 |
| BciVI | GTATCC | 1 cut(s) | 751 |
| BclI | TGATCA | 2 cut(s) | 1681, 3430 |
| BcnI | CCSGG | 2 cut(s) | 16, 755 |
| BcuI | ACTAGT | 1 cut(s) | 3316 |
| BfaI | CTAG | 8 cut(s) | 1073, 1139, 1272, 2313, 3155, 3317, 4062, 4682 |
| BfmI | CTRYAG | 9 cut(s) | 741, 903, 958, 1203, 2205, 3954, 4641, 4812, 4843 |
| BfoI | RGCGCY | 2 cut(s) | 387, 543 |
| BfuI | GTATCC | 1 cut(s) | 751 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 4964 |
| BglII | AGATCT | 2 cut(s) | 2493, 4227 |
| BisI | GCNGC | 9 cut(s) | 153, 1377, 1420, 1592, 1919, 2341, 3341, 3668, 4737 |
| BlpI | GCTNAGC | 1 cut(s) | 633 |
| BlsI | GCNGC | 9 cut(s) | 154, 1378, 1421, 1593, 1920, 2342, 3342, 3669, 4738 |
| BmcAI | AGTACT | 3 cut(s) | 1742, 3491, 4792 |
| Bme1390I | CCNGG | 8 cut(s) | 16, 755, 1165, 1578, 1956, 3057, 3295, 3705 |
| Bme18I | GGWCC | 7 cut(s) | 52, 1836, 2002, 3130, 3585, 3751, 4822 |
| BmrFI | CCNGG | 8 cut(s) | 16, 755, 1165, 1578, 1956, 3057, 3295, 3705 |
| BmrI | ACTGGG | 1 cut(s) | 906 |
| BmuI | ACTGGG | 1 cut(s) | 906 |
| BpiI | GAAGAC | 4 cut(s) | 1358, 2633, 3269, 4367 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 139, 171, 2657, 2689, 4391, 4423, 5093, 5125 |
| BpmI | CTGGAG | 5 cut(s) | 912, 1331, 2759, 4493, 5038 |
| Bpu10I | CCTNAGC | 5 cut(s) | 816, 2438, 2664, 4172, 4398 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 633 |
| Bpu14I | TTCGAA | 1 cut(s) | 667 |
| BpuEI | CTTGAG | 5 cut(s) | 1039, 1523, 2790, 3002, 4524 |
| BpuMI | CCSGG | 2 cut(s) | 16, 755 |
| BsaI | GGTCTC | 1 cut(s) | 4754 |
| BsaJI | CCNNGG | 9 cut(s) | 1164, 1526, 1577, 2406, 3005, 3294, 4140, 4737, 5163 |
| BsaWI | WCCGGW | 2 cut(s) | 2475, 4209 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 661, 691 |
| Bse1I | ACTGG | 7 cut(s) | 901, 975, 2738, 2761, 4472, 4495, 4707 |
| Bse3DI | GCAATG | 4 cut(s) | 1601, 3350, 4974, 5061 |
| BseBI | CCWGG | 6 cut(s) | 1165, 1578, 1956, 3057, 3295, 3705 |
| BseDI | CCNNGG | 9 cut(s) | 1164, 1526, 1577, 2406, 3005, 3294, 4140, 4737, 5163 |
| BseMI | GCAATG | 4 cut(s) | 1601, 3350, 4974, 5061 |
| BseNI | ACTGG | 7 cut(s) | 901, 975, 2738, 2761, 4472, 4495, 4707 |
| BseRI | GAGGAG | 7 cut(s) | 209, 222, 284, 297, 3254, 3296, 4832 |
| BseSI | GKGCMC | 1 cut(s) | 5162 |
| BseXI | GCAGC | 8 cut(s) | 164, 1388, 1431, 1603, 1930, 2352, 3352, 3679 |
| BseYI | CCCAGC | 1 cut(s) | 5134 |
| BsgI | GTGCAG | 3 cut(s) | 795, 1610, 3359 |
| Bsh1236I | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| BshFI | GGCC | 8 cut(s) | 470, 1136, 1762, 2086, 2656, 3511, 3835, 4390 |
| BshNI | GGYRCC | 2 cut(s) | 711, 5159 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1501, 2980 |
| BsiSI | CCGG | 4 cut(s) | 15, 755, 2476, 4210 |
| BslFI | GGGAC | 3 cut(s) | 968, 3285, 5024 |
| BsmBI | CGTCTC | 2 cut(s) | 3172, 4771 |
| BsmFI | GGGAC | 3 cut(s) | 968, 3285, 5024 |
| BsmI | GAATGC | 1 cut(s) | 400 |
| BsnI | GGCC | 8 cut(s) | 470, 1136, 1762, 2086, 2656, 3511, 3835, 4390 |
| Bso31I | GGTCTC | 1 cut(s) | 4754 |
| Bsp119I | TTCGAA | 1 cut(s) | 667 |
| Bsp1286I | GDGCHC | 5 cut(s) | 1501, 2704, 2980, 4438, 5162 |
| Bsp1407I | TGTACA | 1 cut(s) | 3146 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 633 |
| Bsp19I | CCATGG | 4 cut(s) | 1526, 2406, 3005, 4140 |
| BspANI | GGCC | 8 cut(s) | 470, 1136, 1762, 2086, 2656, 3511, 3835, 4390 |
| BspFNI | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| BspHI | TCATGA | 2 cut(s) | 340, 853 |
| BspMAI | CTGCAG | 1 cut(s) | 907 |
| BspQI | GCTCTTC | 2 cut(s) | 852, 5094 |
| BspT104I | TTCGAA | 1 cut(s) | 667 |
| BspT107I | GGYRCC | 2 cut(s) | 711, 5159 |
| BspTNI | GGTCTC | 1 cut(s) | 4754 |
| BsrDI | GCAATG | 4 cut(s) | 1601, 3350, 4974, 5061 |
| BsrGI | TGTACA | 1 cut(s) | 3146 |
| BsrI | ACTGG | 7 cut(s) | 901, 975, 2738, 2761, 4472, 4495, 4707 |
| BssECI | CCNNGG | 9 cut(s) | 1164, 1526, 1577, 2406, 3005, 3294, 4140, 4737, 5163 |
| BssSI | CACGAG | 4 cut(s) | 1446, 1867, 2925, 3616 |
| BssT1I | CCWWGG | 5 cut(s) | 1526, 2406, 3005, 4140, 5163 |
| Bst2BI | CACGAG | 4 cut(s) | 1446, 1867, 2925, 3616 |
| Bst2UI | CCWGG | 6 cut(s) | 1165, 1578, 1956, 3057, 3295, 3705 |
| Bst6I | CTCTTC | 7 cut(s) | 186, 261, 546, 852, 3231, 5094, 5169 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 158 |
| BstAUI | TGTACA | 1 cut(s) | 3146 |
| BstBI | TTCGAA | 1 cut(s) | 667 |
| BstC8I | GCNNGC | 6 cut(s) | 95, 388, 1277, 1824, 3573, 5068 |
| BstDSI | CCRYGG | 5 cut(s) | 1526, 2406, 3005, 4140, 4737 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1575, 3054 |
| BstFNI | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| BstH2I | RGCGCY | 2 cut(s) | 387, 543 |
| BstHHI | GCGC | 7 cut(s) | 386, 542, 598, 2340, 2857, 3212, 4591 |
| BstNI | CCWGG | 6 cut(s) | 1165, 1578, 1956, 3057, 3295, 3705 |
| BstSCI | CCNGG | 8 cut(s) | 14, 753, 1163, 1576, 1954, 3055, 3293, 3703 |
| BstSFI | CTRYAG | 9 cut(s) | 741, 903, 958, 1203, 2205, 3954, 4641, 4812, 4843 |
| BstSLI | GKGCMC | 1 cut(s) | 5162 |
| BstUI | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| BstV1I | GCAGC | 8 cut(s) | 164, 1388, 1431, 1603, 1930, 2352, 3352, 3679 |
| BstV2I | GAAGAC | 4 cut(s) | 1358, 2633, 3269, 4367 |
| BstX2I | RGATCY | 8 cut(s) | 1033, 2020, 2158, 2493, 3769, 3907, 4227, 5130 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 2711, 3063, 4445 |
| BstYI | RGATCY | 8 cut(s) | 1033, 2020, 2158, 2493, 3769, 3907, 4227, 5130 |
| BsuI | GTATCC | 1 cut(s) | 751 |
| BsuRI | GGCC | 8 cut(s) | 470, 1136, 1762, 2086, 2656, 3511, 3835, 4390 |
| BtgI | CCRYGG | 5 cut(s) | 1526, 2406, 3005, 4140, 4737 |
| BtgZI | GCGATG | 5 cut(s) | 2295, 2796, 3198, 4044, 4530 |
| BtsI | GCAGTG | 3 cut(s) | 405, 738, 912 |
| Cac8I | GCNNGC | 6 cut(s) | 95, 388, 1277, 1824, 3573, 5068 |
| CciI | TCATGA | 2 cut(s) | 340, 853 |
| CfoI | GCGC | 7 cut(s) | 386, 542, 598, 2340, 2857, 3212, 4591 |
| Cfr42I | CCGCGG | 1 cut(s) | 4740 |
| CseI | GACGC | 6 cut(s) | 809, 2627, 3088, 3105, 3154, 4361 |
| DraI | TTTAAA | 1 cut(s) | 1015 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 74 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 74 |
| Eam1104I | CTCTTC | 7 cut(s) | 186, 261, 546, 852, 3231, 5094, 5169 |
| EarI | CTCTTC | 7 cut(s) | 186, 261, 546, 852, 3231, 5094, 5169 |
| EciI | GGCGGA | 4 cut(s) | 500, 2253, 3181, 4002 |
| Eco130I | CCWWGG | 5 cut(s) | 1526, 2406, 3005, 4140, 5163 |
| Eco147I | AGGCCT | 2 cut(s) | 2086, 3835 |
| Eco24I | GRGCYC | 2 cut(s) | 2704, 4438 |
| Eco31I | GGTCTC | 1 cut(s) | 4754 |
| Eco32I | GATATC | 1 cut(s) | 1386 |
| Eco47I | GGWCC | 7 cut(s) | 52, 1836, 2002, 3130, 3585, 3751, 4822 |
| Eco57I | CTGAAG | 7 cut(s) | 50, 1788, 2090, 3537, 3839, 5160, 5168 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1575, 3054 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1135, 2654, 4388 |
| EcoRI | GAATTC | 1 cut(s) | 488 |
| EcoRII | CCWGG | 6 cut(s) | 1163, 1576, 1954, 3055, 3293, 3703 |
| EcoRV | GATATC | 1 cut(s) | 1386 |
| EcoT14I | CCWWGG | 5 cut(s) | 1526, 2406, 3005, 4140, 5163 |
| EcoT38I | GRGCYC | 2 cut(s) | 2704, 4438 |
| ErhI | CCWWGG | 5 cut(s) | 1526, 2406, 3005, 4140, 5163 |
| Esp3I | CGTCTC | 2 cut(s) | 3172, 4771 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 4780, 4812 |
| FaqI | GGGAC | 3 cut(s) | 968, 3285, 5024 |
| FauI | CCCGC | 3 cut(s) | 1819, 3112, 3568 |
| FauNDI | CATATG | 2 cut(s) | 1708, 3457 |
| FbaI | TGATCA | 2 cut(s) | 1681, 3430 |
| FblI | GTMKAC | 3 cut(s) | 2613, 3111, 4347 |
| Fnu4HI | GCNGC | 9 cut(s) | 153, 1377, 1420, 1592, 1919, 2341, 3341, 3668, 4737 |
| FriOI | GRGCYC | 2 cut(s) | 2704, 4438 |
| Fsp4HI | GCNGC | 9 cut(s) | 153, 1377, 1420, 1592, 1919, 2341, 3341, 3668, 4737 |
| FspAI | RTGCGCAY | 1 cut(s) | 597 |
| FspBI | CTAG | 8 cut(s) | 1073, 1139, 1272, 2313, 3155, 3317, 4062, 4682 |
| FspI | TGCGCA | 3 cut(s) | 597, 2339, 3211 |
| GlaI | GCGC | 7 cut(s) | 385, 541, 597, 2339, 2856, 3211, 4590 |
| GluI | GCNGC | 9 cut(s) | 153, 1377, 1420, 1592, 1919, 2341, 3341, 3668, 4737 |
| GsaI | CCCAGC | 1 cut(s) | 5138 |
| GsuI | CTGGAG | 5 cut(s) | 912, 1331, 2759, 4493, 5038 |
| HaeII | RGCGCY | 2 cut(s) | 387, 543 |
| HaeIII | GGCC | 8 cut(s) | 470, 1136, 1762, 2086, 2656, 3511, 3835, 4390 |
| HapII | CCGG | 4 cut(s) | 15, 755, 2476, 4210 |
| HgaI | GACGC | 6 cut(s) | 809, 2627, 3088, 3105, 3154, 4361 |
| HhaI | GCGC | 7 cut(s) | 386, 542, 598, 2340, 2857, 3212, 4591 |
| Hin6I | GCGC | 7 cut(s) | 384, 540, 596, 2338, 2855, 3210, 4589 |
| HinP1I | GCGC | 7 cut(s) | 384, 540, 596, 2338, 2855, 3210, 4589 |
| HincII | GTYRAC | 5 cut(s) | 85, 445, 1269, 2614, 4348 |
| HindII | GTYRAC | 5 cut(s) | 85, 445, 1269, 2614, 4348 |
| HindIII | AAGCTT | 4 cut(s) | 1853, 2127, 3602, 3876 |
| HpaII | CCGG | 4 cut(s) | 15, 755, 2476, 4210 |
| HphI | GGTGA | 7 cut(s) | 49, 1884, 1895, 3283, 3295, 3633, 3644 |
| Hpy99I | CGWCG | 3 cut(s) | 80, 3099, 3104 |
| HpyCH4IV | ACGT | 6 cut(s) | 865, 1947, 2424, 3696, 4158, 4780 |
| HpySE526I | ACGT | 6 cut(s) | 865, 1947, 2424, 3696, 4158, 4780 |
| HspAI | GCGC | 7 cut(s) | 384, 540, 596, 2338, 2855, 3210, 4589 |
| KpnI | GGTACC | 1 cut(s) | 715 |
| Ksp22I | TGATCA | 2 cut(s) | 1681, 3430 |
| KspI | CCGCGG | 1 cut(s) | 4740 |
| LguI | GCTCTTC | 2 cut(s) | 852, 5094 |
| Lsp1109I | GCAGC | 8 cut(s) | 164, 1388, 1431, 1603, 1930, 2352, 3352, 3679 |
| MaeI | CTAG | 8 cut(s) | 1073, 1139, 1272, 2313, 3155, 3317, 4062, 4682 |
| MaeII | ACGT | 6 cut(s) | 865, 1947, 2424, 3696, 4158, 4780 |
| MaeIII | GTNAC | 8 cut(s) | 24, 400, 1404, 1948, 3289, 3697, 4677, 5116 |
| MfeI | CAATTG | 3 cut(s) | 1437, 2916, 4977 |
| MflI | RGATCY | 8 cut(s) | 1033, 2020, 2158, 2493, 3769, 3907, 4227, 5130 |
| MhlI | GDGCHC | 5 cut(s) | 1501, 2704, 2980, 4438, 5162 |
| MluI | ACGCGT | 1 cut(s) | 3097 |
| MlyI | GAGTC | 3 cut(s) | 1151, 2797, 4531 |
| MmeI | TCCRAC | 1 cut(s) | 58 |
| MslI | CAYNNNNRTG | 3 cut(s) | 47, 2709, 4443 |
| MspA1I | CMGCKG | 4 cut(s) | 932, 1422, 4739, 5138 |
| MspI | CCGG | 4 cut(s) | 15, 755, 2476, 4210 |
| MspR9I | CCNGG | 8 cut(s) | 16, 755, 1165, 1578, 1956, 3057, 3295, 3705 |
| MunI | CAATTG | 3 cut(s) | 1437, 2916, 4977 |
| Mva1269I | GAATGC | 1 cut(s) | 400 |
| MvaI | CCWGG | 6 cut(s) | 1165, 1578, 1956, 3057, 3295, 3705 |
| MvnI | CGCG | 6 cut(s) | 1254, 2280, 3099, 3119, 4029, 4739 |
| NciI | CCSGG | 2 cut(s) | 16, 755 |
| NcoI | CCATGG | 4 cut(s) | 1526, 2406, 3005, 4140 |
| NdeI | CATATG | 2 cut(s) | 1708, 3457 |
| NmuCI | GTSAC | 4 cut(s) | 24, 400, 3289, 5116 |
| NsbI | TGCGCA | 3 cut(s) | 597, 2339, 3211 |
| NspV | TTCGAA | 1 cut(s) | 667 |
| PagI | TCATGA | 2 cut(s) | 340, 853 |
| PceI | AGGCCT | 2 cut(s) | 2086, 3835 |
| PciSI | GCTCTTC | 2 cut(s) | 852, 5094 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 1760, 3103, 3509 |
| PctI | GAATGC | 1 cut(s) | 400 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 61 |
| PfoI | TCCNGGA | 2 cut(s) | 753, 3055 |
| PkrI | GCNGC | 9 cut(s) | 154, 1378, 1421, 1593, 1920, 2342, 3342, 3669, 4738 |
| PleI | GAGTC | 3 cut(s) | 1150, 2797, 4531 |
| PpsI | GAGTC | 3 cut(s) | 1150, 2797, 4531 |
| PsiI | TTATAA | 1 cut(s) | 3138 |
| Psp6I | CCWGG | 6 cut(s) | 1163, 1576, 1954, 3055, 3293, 3703 |
| PspFI | CCCAGC | 1 cut(s) | 5134 |
| PspGI | CCWGG | 6 cut(s) | 1163, 1576, 1954, 3055, 3293, 3703 |
| PstI | CTGCAG | 1 cut(s) | 907 |
| PsuI | RGATCY | 8 cut(s) | 1033, 2020, 2158, 2493, 3769, 3907, 4227, 5130 |
| PvuII | CAGCTG | 3 cut(s) | 932, 1422, 5138 |
| RseI | CAYNNNNRTG | 3 cut(s) | 47, 2709, 4443 |
| SacII | CCGCGG | 1 cut(s) | 4740 |
| SalI | GTCGAC | 2 cut(s) | 2612, 4346 |
| SapI | GCTCTTC | 2 cut(s) | 852, 5094 |
| SatI | GCNGC | 9 cut(s) | 153, 1377, 1420, 1592, 1919, 2341, 3341, 3668, 4737 |
| ScaI | AGTACT | 3 cut(s) | 1742, 3491, 4792 |
| SchI | GAGTC | 3 cut(s) | 1151, 2797, 4531 |
| ScrFI | CCNGG | 8 cut(s) | 16, 755, 1165, 1578, 1956, 3057, 3295, 3705 |
| SduI | GDGCHC | 5 cut(s) | 1501, 2704, 2980, 4438, 5162 |
| SfcI | CTRYAG | 9 cut(s) | 741, 903, 958, 1203, 2205, 3954, 4641, 4812, 4843 |
| Sfr303I | CCGCGG | 1 cut(s) | 4740 |
| SfuI | TTCGAA | 1 cut(s) | 667 |
| SgrBI | CCGCGG | 1 cut(s) | 4740 |
| SinI | GGWCC | 7 cut(s) | 52, 1836, 2002, 3130, 3585, 3751, 4822 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 47, 2709, 4443 |
| SmlI | CTYRAG | 5 cut(s) | 1054, 1502, 2805, 2981, 4539 |
| SmoI | CTYRAG | 5 cut(s) | 1054, 1502, 2805, 2981, 4539 |
| SpeI | ACTAGT | 1 cut(s) | 3316 |
| SseBI | AGGCCT | 2 cut(s) | 2086, 3835 |
| SspMI | CTAG | 8 cut(s) | 1073, 1139, 1272, 2313, 3155, 3317, 4062, 4682 |
| StuI | AGGCCT | 2 cut(s) | 2086, 3835 |
| StyD4I | CCNGG | 8 cut(s) | 14, 753, 1163, 1576, 1954, 3055, 3293, 3703 |
| StyI | CCWWGG | 5 cut(s) | 1526, 2406, 3005, 4140, 5163 |
| TaiI | ACGT | 6 cut(s) | 868, 1950, 2427, 3699, 4161, 4783 |
| TauI | GCSGC | 1 cut(s) | 4739 |
| TseFI | GTSAC | 4 cut(s) | 24, 400, 3289, 5116 |
| TseI | GCWGC | 8 cut(s) | 152, 1376, 1419, 1591, 1918, 2340, 3340, 3667 |
| Tsp45I | GTSAC | 4 cut(s) | 24, 400, 3289, 5116 |
| TspGWI | ACGGA | 4 cut(s) | 1295, 1994, 3743, 4814 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 61 |
| VpaK11BI | GGWCC | 7 cut(s) | 52, 1836, 2002, 3130, 3585, 3751, 4822 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1575, 3054 |
| XapI | RAATTY | 7 cut(s) | 377, 488, 2575, 2595, 4309, 4329, 4837 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 478 |
| XmiI | GTMKAC | 3 cut(s) | 2613, 3111, 4347 |
| XspI | CTAG | 8 cut(s) | 1073, 1139, 1272, 2313, 3155, 3317, 4062, 4682 |
| ZrmI | AGTACT | 3 cut(s) | 1742, 3491, 4792 |