pycom02g06330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013232
Physical Location & Seq
Reverse (-)
4400407 .. 4401045
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
ATGCGCAAGAGACCCGGAAGCGAACCGGCGGAGGAGGAGGGGAGCGCCGCGAAGAAGCAGCGACATCTGGCGGCGGAACAAGTGATAAGCGACGACGTTGAGACTGTGCCCTCCAAGGCAAACGACTGGAAGCTCGAGGAGCTCGCGAAGCTCGTGAACAAAGACTGGCCGATCGTGCCCGCTGCAGGTGCCGCAGCGGTGACTTTCGTCGAGAACCCGTACTCGCAGCCCTGGGTGTTCCAAGCGCTGCCGTCGTCATACGTCACGATCAACCTCAACGAGGAGAGCTGCGGGCCGTCGTTCTCGGACTCAGTGTCGACGGTCATGGCGAGCGTCGACCTCGGCGGCTTGTACGGCATTTCGAAGGAGGTGCTGGGGTTGGAGTCCGAGAAGTGGTTGATGGAGGAGGTGGAGGAGGCTAGCGGTTTGTACGGACTTACAAAGGAGGTTATCGGTTTGGAATCTTTGAAGTTCGTAATGGCGGAGGAGAAAGAGGCGAGTGGGTTCGGCTGTGCGTCTGGTGAAACAAAAGAGTTGGCTCGTGGTGGTTGGGCGGGGGTGGAGATGGACTGGGACGATGCTGCGCTGGCGAGGTTTATCGGGGAAGACGGAGACTTACCTGAAGGGTGTGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.82

Weight (kDa)

4.33

Isoelectric Point (pI)

43.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013232)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56880
fragaria_vesca FvH4_1g07430 FvH4_1g21692
malus_domestica MD02G1079500.v1.1 MD15G1207000.v1.1
prunus_persica Prupe.7G209700_v2.0.a1
pyrus_communis pycom02g06330
rosa_laevigata RLG00000016392
rosa_multiflora Rmu_sc0005227.1_g000006 Rmu_sc0005227.1_g000007 Rmu_sc0005227.1_g000008
rosa_roxburghii Rroxscaffold_2G00148170
rosa_rugosa Rorug02G0034900
rosa_samantha Rh2AG081100 Rh2BG082200 Rh2CG084400 Rh2DG080100
rosa_wichuraiana Rw2G006560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 1 cut(s) 176
AccB1I GGYRCC 1 cut(s) 188
AccI GTMKAC 2 cut(s) 317, 336
AccII CGCG 2 cut(s) 50, 146
AcoI YGGCCR 1 cut(s) 167
AfaI GTAC 3 cut(s) 221, 353, 431
AfeI AGCGCT 1 cut(s) 246
AfiI CCNNNNNNNGG 3 cut(s) 185, 280, 393
AgsI TTSAA 1 cut(s) 469
AhdI GACNNNNNGTC 1 cut(s) 313
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 4 cut(s) 133, 142, 151, 288
AluI AGCT 4 cut(s) 133, 142, 151, 288
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 4, 95, 606
Ama87I CYCGRG 1 cut(s) 134
Aor51HI AGCGCT 1 cut(s) 246
AoxI GGCC 2 cut(s) 167, 293
ApeKI GCWGC 7 cut(s) 58, 182, 194, 226, 247, 288, 581
AspLEI GCGC 4 cut(s) 6, 47, 247, 586
AspS9I GGNCC 1 cut(s) 293
AsuC2I CCSGG 1 cut(s) 15
AsuHPI GGTGA 2 cut(s) 211, 533
AsuII TTCGAA 1 cut(s) 362
AsuNHI GCTAGC 1 cut(s) 419
AvaI CYCGRG 1 cut(s) 134
BaeGI GKGCMC 2 cut(s) 111, 180
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 144
BauI CACGAG 2 cut(s) 152, 540
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 7 cut(s) 70, 169, 206, 234, 238, 275, 568
BccI CCATC 2 cut(s) 394, 559
BceAI ACGGC 3 cut(s) 235, 280, 370
BcgI CGANNNNNNTGC 2 cut(s) 352, 386
BciT130I CCWGG 1 cut(s) 232
BcnI CCSGG 1 cut(s) 15
BcoDI GTCTC 3 cut(s) 4, 95, 606
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 183
BfoI RGCGCY 2 cut(s) 48, 248
BfuAI ACCTGC 1 cut(s) 176
Bme1390I CCNGG 2 cut(s) 15, 232
BmeRI GACNNNNNGTC 1 cut(s) 313
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 293
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 2 cut(s) 15, 232
BmrI ACTGGG 1 cut(s) 580
BmsI GCATC 1 cut(s) 568
BmtI GCTAGC 1 cut(s) 423
BmuI ACTGGG 1 cut(s) 580
BoxI GACNNNNGTC 1 cut(s) 206
BpiI GAAGAC 1 cut(s) 612
Bpu14I TTCGAA 1 cut(s) 362
BpuMI CCSGG 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 4
BsaJI CCNNGG 4 cut(s) 114, 230, 231, 340
Bsc4I CCNNNNNNNGG 3 cut(s) 185, 280, 393
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 3 cut(s) 131, 170, 575
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 4 cut(s) 114, 230, 231, 340
BseLI CCNNNNNNNGG 3 cut(s) 185, 280, 393
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 3 cut(s) 131, 170, 575
BseRI GAGGAG 7 cut(s) 47, 50, 152, 296, 419, 428, 500
BseSI GKGCMC 2 cut(s) 111, 180
BseXI GCAGC 7 cut(s) 70, 169, 206, 234, 238, 275, 568
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 2 cut(s) 50, 146
Bsh1285I CGRYCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 169, 295
BshNI GGYRCC 1 cut(s) 188
BsiEI CGRYCG 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 2 cut(s) 15, 26
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 3 cut(s) 185, 280, 393
BsmAI GTCTC 3 cut(s) 4, 95, 606
BsmFI GGGAC 1 cut(s) 587
BsnI GGCC 2 cut(s) 169, 295
Bso31I GGTCTC 1 cut(s) 4
BsoBI CYCGRG 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 362
Bsp1286I GDGCHC 3 cut(s) 111, 144, 180
Bsp143I GATC 2 cut(s) 171, 267
Bsp68I TCGCGA 1 cut(s) 146
BspANI GGCC 2 cut(s) 169, 295
BspCNI CTCAG 1 cut(s) 323
BspFNI CGCG 2 cut(s) 50, 146
BspLI GGNNCC 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 187
BspMI ACCTGC 1 cut(s) 176
BspOI GCTAGC 1 cut(s) 423
BspT104I TTCGAA 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 4
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 3 cut(s) 131, 170, 575
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 114, 230, 231, 340
BssMI GATC 2 cut(s) 171, 267
BssSI CACGAG 2 cut(s) 152, 540
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 2 cut(s) 152, 540
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 106, 322
BstBI TTCGAA 1 cut(s) 362
BstC8I GCNNGC 6 cut(s) 144, 180, 293, 331, 421, 588
BstDEI CTNAG 1 cut(s) 310
BstENI CCTNNNNNAGG 1 cut(s) 278
BstFNI CGCG 2 cut(s) 50, 146
BstH2I RGCGCY 2 cut(s) 48, 248
BstHHI GCGC 4 cut(s) 6, 47, 247, 586
BstKTI GATC 2 cut(s) 174, 270
BstMAI GTCTC 3 cut(s) 4, 95, 606
BstMBI GATC 2 cut(s) 171, 267
BstMCI CGRYCG 1 cut(s) 174
BstMWI GCNNNNNNNGC 7 cut(s) 139, 148, 175, 188, 191, 354, 587
BstNI CCWGG 1 cut(s) 232
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 13, 230
BstSFI CTRYAG 1 cut(s) 183
BstSLI GKGCMC 2 cut(s) 111, 180
BstUI CGCG 2 cut(s) 50, 146
BstV1I GCAGC 7 cut(s) 70, 169, 206, 234, 238, 275, 568
BstV2I GAAGAC 1 cut(s) 612
BsuRI GGCC 2 cut(s) 169, 295
BtsIMutI CAGTG 1 cut(s) 318
BtuMI TCGCGA 1 cut(s) 146
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 6 cut(s) 144, 180, 293, 331, 421, 588
CfoI GCGC 4 cut(s) 6, 47, 247, 586
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 293
CseI GACGC 2 cut(s) 322, 504
Csp6I GTAC 3 cut(s) 220, 352, 430
CviAII CATG 1 cut(s) 325
CviQI GTAC 3 cut(s) 220, 352, 430
DdeI CTNAG 1 cut(s) 310
DpnI GATC 2 cut(s) 173, 269
DpnII GATC 2 cut(s) 171, 267
DriI GACNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 167
Eam1105I GACNNNNNGTC 1 cut(s) 313
EciI GGCGGA 3 cut(s) 44, 89, 497
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 4
Eco47III AGCGCT 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 134
EcoICRI GAGCTC 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 328
FaiI YATR 2 cut(s) 259, 326
FaqI GGGAC 1 cut(s) 587
FatI CATG 1 cut(s) 324
FauI CCCGC 3 cut(s) 187, 284, 547
FblI GTMKAC 2 cut(s) 317, 336
FriOI GRGCYC 1 cut(s) 144
FspBI CTAG 1 cut(s) 420
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 4 cut(s) 5, 46, 246, 585
GsaI CCCAGC 1 cut(s) 377
HaeII RGCGCY 2 cut(s) 48, 248
HaeIII GGCC 2 cut(s) 169, 295
HapII CCGG 2 cut(s) 15, 26
HgaI GACGC 2 cut(s) 322, 504
HhaI GCGC 4 cut(s) 6, 47, 247, 586
Hin1II CATG 1 cut(s) 328
Hin6I GCGC 4 cut(s) 4, 45, 245, 584
HinP1I GCGC 4 cut(s) 4, 45, 245, 584
HincII GTYRAC 2 cut(s) 318, 337
HindII GTYRAC 2 cut(s) 318, 337
HinfI GANTC 3 cut(s) 308, 383, 461
HpaII CCGG 2 cut(s) 15, 26
HphI GGTGA 2 cut(s) 211, 533
Hpy166II GTNNAC 3 cut(s) 157, 318, 337
Hpy188I TCNGA 2 cut(s) 307, 388
Hpy188III TCNNGA 4 cut(s) 145, 154, 211, 265
Hpy8I GTNNAC 3 cut(s) 157, 318, 337
Hpy99I CGWCG 7 cut(s) 95, 98, 212, 256, 301, 322, 338
HpyAV CCTTC 2 cut(s) 358, 617
HpyCH4III ACNGT 2 cut(s) 106, 322
HpyCH4IV ACGT 2 cut(s) 96, 261
HpyCH4V TGCA 1 cut(s) 185
HpyF10VI GCNNNNNNNGC 7 cut(s) 139, 148, 175, 188, 191, 354, 587
HpyF3I CTNAG 1 cut(s) 310
HpySE526I ACGT 2 cut(s) 96, 261
Hsp92II CATG 1 cut(s) 328
HspAI GCGC 4 cut(s) 4, 45, 245, 584
Kzo9I GATC 2 cut(s) 171, 267
LmnI GCTCC 2 cut(s) 42, 139
Lsp1109I GCAGC 7 cut(s) 70, 169, 206, 234, 238, 275, 568
LweI GCATC 1 cut(s) 568
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 96, 261
MaeIII GTNAC 2 cut(s) 199, 262
MalI GATC 2 cut(s) 173, 269
MboI GATC 2 cut(s) 171, 267
MboII GAAGA 2 cut(s) 64, 617
MhlI GDGCHC 3 cut(s) 111, 144, 180
MlyI GAGTC 2 cut(s) 302, 392
MmeI TCCRAC 1 cut(s) 360
MspA1I CMGCKG 2 cut(s) 182, 197
MspI CCGG 2 cut(s) 15, 26
MspR9I CCNGG 2 cut(s) 15, 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 2 cut(s) 50, 146
MwoI GCNNNNNNNGC 7 cut(s) 139, 148, 175, 188, 191, 354, 587
NciI CCSGG 1 cut(s) 15
NdeII GATC 2 cut(s) 171, 267
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 1 cut(s) 328
NlaIV GGNNCC 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 321
NmuCI GTSAC 2 cut(s) 199, 262
NruI TCGCGA 1 cut(s) 146
NsbI TGCGCA 1 cut(s) 5
NspV TTCGAA 1 cut(s) 362
PaeR7I CTCGAG 1 cut(s) 134
PaqCI CACCTGC 1 cut(s) 176
PasI CCCWGGG 1 cut(s) 231
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 326
PfeI GAWTC 1 cut(s) 461
Ple19I CGATCG 1 cut(s) 174
PleI GAGTC 2 cut(s) 302, 391
PpsI GAGTC 2 cut(s) 302, 391
PshAI GACNNNNGTC 1 cut(s) 206
Psp124BI GAGCTC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 134
PstI CTGCAG 1 cut(s) 187
PvuI CGATCG 1 cut(s) 174
RruI TCGCGA 1 cut(s) 146
RsaI GTAC 3 cut(s) 221, 353, 431
RsaNI GTAC 3 cut(s) 220, 352, 430
SacI GAGCTC 1 cut(s) 144
SalI GTCGAC 2 cut(s) 316, 335
Sau3AI GATC 2 cut(s) 171, 267
Sau96I GGNCC 1 cut(s) 293
SchI GAGTC 2 cut(s) 302, 392
ScrFI CCNGG 2 cut(s) 15, 232
SduI GDGCHC 3 cut(s) 111, 144, 180
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 183
Sfr274I CTCGAG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 362
SlaI CTCGAG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
SspMI CTAG 1 cut(s) 420
SstI GAGCTC 1 cut(s) 144
StyD4I CCNGG 2 cut(s) 13, 230
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 106, 322
TaiI ACGT 2 cut(s) 99, 264
TaqI TCGA 5 cut(s) 135, 210, 317, 336, 362
TauI GCSGC 4 cut(s) 50, 74, 194, 348
TfiI GAWTC 1 cut(s) 461
TscAI CASTG 1 cut(s) 318
TseFI GTSAC 2 cut(s) 199, 262
TseI GCWGC 7 cut(s) 58, 182, 194, 226, 247, 288, 581
Tsp45I GTSAC 2 cut(s) 199, 262
TspGWI ACGGA 2 cut(s) 447, 624
TspRI CASTG 1 cut(s) 318
XagI CCTNNNNNAGG 1 cut(s) 278
XhoI CTCGAG 1 cut(s) 134
XmiI GTMKAC 2 cut(s) 317, 336
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.