Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0009224

Physical Location & Seq

Genomic Coordinates Forward (+)

4491689 .. 4493020

Gene Structure 1332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGAGAACCTGGTTACCAGAAGCTTTTTCCAGACAATTATCTCCACATACAGAAGTTGCCAGCAGGCCAATCAATGTTCAGCAAAACCCACCGTCATCCTCTTCATCTTCTTTGAGATCACTTTCCGCAATTGATAGTCCTGAATATTCCTCCCTCCTCTTCAACATTCCAACCGCTACTACTTCCCATAACATCCCAGAGATCTTTACACAATTATCTTCCGATCCCTTGCAACCAATCAATATTAATCCATTGGAACCTTTACCAATCATAAATCTCATTACTACTACTTCTACTAGTACTAGTCCTCATCAACAAGCCATCCAAGCTTTTTCTCGAACCCGAAACATCCAATTCCCAACTCCGGAGATCGAAGATGCCGCAATGACAAGAGCTATCCTTGCAGTTCTATCTTCTTCACCTTCTTCTTCTTCGTATCAACCACCCCCACATACTAATCCACCTTCTTCTTCTACTACTTATCGTCACTTACTAACTCCAAAATCCACTGCTTTCAAGACTTACAGCACCTCAGCTTTAGCCCCAAGAACCCAAATGAGTGCTAATTTACGCCGGCAAAACATGCACAAGCGATCCATTTCCTTCTTGAGAAGCTTGAATCTGATGAGGCTTCGTGAAGGTATCCAAACCACCCGTCCCACAAGCGGCCAGTTGCATCATATGATATCGGAGCGCAAAAGGCGTGAGAAGCTCAATGAAAGCTTTCATACATTGAAATCATTACTTCCACCTGGAACCAAGAAAGACAAAGCCTCGGTTCTTATATCTGCGAGGGAGTACTTGACTAGTTTAAAAGCTCGAGTTGCTGAGCTTAGTAAAAGAAACCAGCAGTTAGAGGCAAGGCTCTTGCCCCCGGCCAACTTAGGAGCTAATGAAGCAGCAGCTACCGCAGGCTCCTCAAATGAAAGAGTTAGTCTTACACTTACGCATGTATCATCCGAATCATCCCCGGATCAAGATCAGCAAATTATTGACTTGCAAGTGGTTCTAAGATCACTAGAGAGTTGCACCGAAGATATGGTGATCCGCATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

353

Amino Acids

38.94

Weight (kDa)

9.98

Isoelectric Point (pI)

75.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	226 - 271	5.7e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009224)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56960 AT5G56960
fragaria_vesca	FvH4_1g07710 FvH4_1g07710 FvH4_1g07710
malus_domestica	MD02G1081600.v1.1 MD15G1208900.v1.1
prunus_persica	Prupe.7G207500_v2.0.a1
pyrus_communis	pycom02g06440 pycom15g18520
rosa_chinensis	RchiOBHm_Chr2g0093571
rosa_laevigata	RLG00000016419
rosa_multiflora	Rmu_sc0006964.1_g000006 Rmu_sc0024845.1_g000001 Rmu_sc0024846.1_g000001
rosa_roxburghii	Rroxscaffold_2G00147970
rosa_rugosa	Rorug02G0037700
rosa_samantha	Rh2AG084200 Rh2BG084800 Rh2CG087100 Rh2DG082800
rosa_wichuraiana	Rw2G007120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	364
AciI	CCGC	6 cut(s)	126, 174, 381, 666, 909, 1048
AclWI	GGATC	4 cut(s)	218, 588, 981, 1039
AcoI	YGGCCR	2 cut(s)	667, 876
AfaI	GTAC	2 cut(s)	301, 800
AfiI	CCNNNNNNNGG	2 cut(s)	364, 665
AgsI	TTSAA	4 cut(s)	163, 517, 619, 736
AhlI	ACTAGT	3 cut(s)	296, 302, 806
AjnI	CCWGG	2 cut(s)	8, 751
AlwI	GGATC	4 cut(s)	218, 588, 981, 1039
Ama87I	CYCGRG	1 cut(s)	819
Aor13HI	TCCGGA	1 cut(s)	364
AoxI	GGCC	3 cut(s)	65, 667, 876
ApeKI	GCWGC	2 cut(s)	899, 902
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	723
AspLEI	GCGC	1 cut(s)	696
AsuC2I	CCSGG	2 cut(s)	875, 971
AsuHPI	GGTGA	2 cut(s)	411, 1054
AvaI	CYCGRG	1 cut(s)	819
BaeI	ACNNNNGTAYC	2 cut(s)	936, 969
BbvCI	CCTCAGC	1 cut(s)	532
BbvI	GCAGC	2 cut(s)	911, 914
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	2 cut(s)	10, 753
BciVI	GTATCC	1 cut(s)	653
BcnI	CCSGG	2 cut(s)	875, 971
BcuI	ACTAGT	3 cut(s)	296, 302, 806
BfaI	CTAG	4 cut(s)	297, 303, 807, 1019
BfuI	GTATCC	1 cut(s)	653
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	4 cut(s)	381, 667, 900, 903
BlpI	GCTNAGC	1 cut(s)	828
BlsI	GCNGC	4 cut(s)	382, 668, 901, 904
BmcAI	AGTACT	2 cut(s)	301, 800
Bme1390I	CCNGG	4 cut(s)	10, 753, 875, 971
BmeT110I	CYCGRG	1 cut(s)	819
BmiI	GGNNCC	3 cut(s)	258, 757, 916
BmrFI	CCNGG	4 cut(s)	10, 753, 875, 971
BmsI	GCATC	2 cut(s)	367, 685
Bpu10I	CCTNAGC	1 cut(s)	532
Bpu1102I	GCTNAGC	1 cut(s)	828
BpuEI	CTTGAG	1 cut(s)	628
BpuMI	CCSGG	2 cut(s)	875, 971
BsaBI	GATNNNNATC	1 cut(s)	978
BsaJI	CCNNGG	3 cut(s)	774, 873, 969
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 665
Bse118I	RCCGGY	1 cut(s)	573
Bse1I	ACTGG	1 cut(s)	670
Bse3DI	GCAATG	1 cut(s)	390
Bse8I	GATNNNNATC	1 cut(s)	978
BseAI	TCCGGA	1 cut(s)	364
BseBI	CCWGG	2 cut(s)	10, 753
BseDI	CCNNGG	3 cut(s)	774, 873, 969
BseGI	GGATG	6 cut(s)	95, 192, 321, 348, 956, 965
BseJI	GATNNNNATC	1 cut(s)	978
BseLI	CCNNNNNNNGG	2 cut(s)	364, 665
BseMI	GCAATG	1 cut(s)	390
BseMII	CTCAG	2 cut(s)	546, 819
BseNI	ACTGG	1 cut(s)	670
BseRI	GAGGAG	2 cut(s)	146, 907
BseXI	GCAGC	2 cut(s)	911, 914
BshFI	GGCC	3 cut(s)	67, 669, 878
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	4 cut(s)	365, 574, 875, 971
BslFI	GGGAC	1 cut(s)	642
BslI	CCNNNNNNNGG	2 cut(s)	364, 665
BsmFI	GGGAC	1 cut(s)	642
BsnI	GGCC	3 cut(s)	67, 669, 878
BsoBI	CYCGRG	1 cut(s)	819
Bsp13I	TCCGGA	1 cut(s)	364
Bsp143I	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
Bsp1720I	GCTNAGC	1 cut(s)	828
BspACI	CCGC	6 cut(s)	126, 174, 381, 666, 909, 1048
BspANI	GGCC	3 cut(s)	67, 669, 878
BspCNI	CTCAG	2 cut(s)	545, 820
BspEI	TCCGGA	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	258, 757, 916
BspPI	GGATC	4 cut(s)	218, 588, 981, 1039
BsrDI	GCAATG	1 cut(s)	390
BsrFI	RCCGGY	1 cut(s)	573
BsrI	ACTGG	1 cut(s)	670
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	774, 873, 969
BssMI	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
Bst2UI	CCWGG	2 cut(s)	10, 753
Bst4CI	ACNGT	1 cut(s)	93
Bst6I	CTCTTC	2 cut(s)	106, 164
BstAPI	GCANNNNNTGC	1 cut(s)	583
BstC8I	GCNNGC	4 cut(s)	61, 65, 575, 913
BstDEI	CTNAG	5 cut(s)	532, 828, 833, 883, 1010
BstEII	GGTNACC	1 cut(s)	12
BstF5I	GGATG	6 cut(s)	95, 192, 321, 348, 956, 965
BstHHI	GCGC	1 cut(s)	696
BstKTI	GATC	9 cut(s)	119, 204, 226, 372, 596, 976, 982, 1016, 1047
BstMBI	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
BstMWI	GCNNNNNNNGC	8 cut(s)	326, 401, 583, 700, 709, 824, 896, 908
BstNI	CCWGG	2 cut(s)	10, 753
BstNSI	RCATGY	2 cut(s)	586, 953
BstPI	GGTNACC	1 cut(s)	12
BstSCI	CCNGG	4 cut(s)	8, 751, 873, 969
BstV1I	GCAGC	2 cut(s)	911, 914
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuI	GTATCC	1 cut(s)	653
BsuRI	GGCC	3 cut(s)	67, 669, 878
BtsCI	GGATG	6 cut(s)	95, 192, 321, 348, 956, 965
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	1 cut(s)	507
Cac8I	GCNNGC	4 cut(s)	61, 65, 575, 913
CfoI	GCGC	1 cut(s)	696
Cfr10I	RCCGGY	1 cut(s)	573
CsiI	ACCWGGT	1 cut(s)	8
Csp6I	GTAC	2 cut(s)	300, 799
CviAII	CATG	2 cut(s)	583, 950
CviQI	GTAC	2 cut(s)	300, 799
DdeI	CTNAG	5 cut(s)	532, 828, 833, 883, 1010
DpnI	GATC	9 cut(s)	118, 203, 225, 371, 595, 975, 981, 1015, 1046
DpnII	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
DraI	TTTAAA	1 cut(s)	813
EaeI	YGGCCR	2 cut(s)	667, 876
Eam1104I	CTCTTC	2 cut(s)	106, 164
EarI	CTCTTC	2 cut(s)	106, 164
Eco32I	GATATC	1 cut(s)	687
Eco88I	CYCGRG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	12
EcoO65I	GGTNACC	1 cut(s)	12
EcoRII	CCWGG	2 cut(s)	8, 751
EcoRV	GATATC	1 cut(s)	687
FaeI	CATG	2 cut(s)	586, 953
FaqI	GGGAC	1 cut(s)	642
FatI	CATG	2 cut(s)	582, 949
FauNDI	CATATG	1 cut(s)	681
Fnu4HI	GCNGC	4 cut(s)	381, 667, 900, 903
FokI	GGATG	6 cut(s)	82, 179, 308, 335, 943, 952
Fsp4HI	GCNGC	4 cut(s)	381, 667, 900, 903
FspBI	CTAG	4 cut(s)	297, 303, 807, 1019
GlaI	GCGC	1 cut(s)	695
GluI	GCNGC	4 cut(s)	381, 667, 900, 903
HaeIII	GGCC	3 cut(s)	67, 669, 878
HapII	CCGG	4 cut(s)	365, 574, 875, 971
HhaI	GCGC	1 cut(s)	696
Hin1II	CATG	2 cut(s)	586, 953
Hin6I	GCGC	1 cut(s)	694
HinP1I	GCGC	1 cut(s)	694
HindIII	AAGCTT	4 cut(s)	21, 327, 613, 721
HinfI	GANTC	2 cut(s)	619, 962
HpaII	CCGG	4 cut(s)	365, 574, 875, 971
HphI	GGTGA	2 cut(s)	411, 1054
Hpy188I	TCNGA	4 cut(s)	223, 624, 691, 961
Hpy188III	TCNNGA	8 cut(s)	30, 140, 336, 365, 517, 607, 635, 977
HpyAV	CCTTC	4 cut(s)	432, 474, 613, 632
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	6 cut(s)	232, 404, 586, 676, 1000, 1029
HpyF10VI	GCNNNNNNNGC	8 cut(s)	326, 401, 583, 700, 709, 824, 896, 908
HpyF3I	CTNAG	5 cut(s)	532, 828, 833, 883, 1010
Hsp92II	CATG	2 cut(s)	586, 953
HspAI	GCGC	1 cut(s)	694
Kpn2I	TCCGGA	1 cut(s)	364
KroI	GCCGGC	1 cut(s)	573
KroNI	GCCGGC	1 cut(s)	575
Kzo9I	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
LmnI	GCTCC	3 cut(s)	691, 887, 920
Lsp1109I	GCAGC	2 cut(s)	911, 914
LweI	GCATC	2 cut(s)	367, 685
MabI	ACCWGGT	1 cut(s)	8
MaeI	CTAG	4 cut(s)	297, 303, 807, 1019
MaeIII	GTNAC	2 cut(s)	12, 485
MalI	GATC	9 cut(s)	118, 203, 225, 371, 595, 975, 981, 1015, 1046
MboI	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
MfeI	CAATTG	1 cut(s)	129
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	6 cut(s)	35, 129, 212, 353, 565, 987
MmeI	TCCRAC	1 cut(s)	194
MroI	TCCGGA	1 cut(s)	364
MroNI	GCCGGC	1 cut(s)	573
MroXI	GAANNNNTTC	1 cut(s)	723
MseI	TTAA	2 cut(s)	246, 812
MspI	CCGG	4 cut(s)	365, 574, 875, 971
MspR9I	CCNGG	4 cut(s)	10, 753, 875, 971
MunI	CAATTG	1 cut(s)	129
MvaI	CCWGG	2 cut(s)	10, 753
MwoI	GCNNNNNNNGC	8 cut(s)	326, 401, 583, 700, 709, 824, 896, 908
NaeI	GCCGGC	1 cut(s)	575
NciI	CCSGG	2 cut(s)	875, 971
NdeI	CATATG	1 cut(s)	681
NdeII	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
NgoMIV	GCCGGC	1 cut(s)	573
NlaIII	CATG	2 cut(s)	586, 953
NlaIV	GGNNCC	3 cut(s)	258, 757, 916
NmuCI	GTSAC	1 cut(s)	485
NspI	RCATGY	2 cut(s)	586, 953
PaeR7I	CTCGAG	1 cut(s)	819
PdiI	GCCGGC	1 cut(s)	575
PdmI	GAANNNNTTC	1 cut(s)	723
PfeI	GAWTC	2 cut(s)	619, 962
PkrI	GCNGC	4 cut(s)	382, 668, 901, 904
PshBI	ATTAAT	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	8, 751
PspEI	GGTNACC	1 cut(s)	12
PspGI	CCWGG	2 cut(s)	8, 751
PspN4I	GGNNCC	3 cut(s)	258, 757, 916
PspXI	VCTCGAGB	1 cut(s)	819
PsuI	RGATCY	1 cut(s)	201
RsaI	GTAC	2 cut(s)	301, 800
RsaNI	GTAC	2 cut(s)	300, 799
SaqAI	TTAA	2 cut(s)	246, 812
SatI	GCNGC	4 cut(s)	381, 667, 900, 903
Sau3AI	GATC	9 cut(s)	116, 201, 223, 369, 593, 973, 979, 1013, 1044
ScaI	AGTACT	2 cut(s)	301, 800
ScrFI	CCNGG	4 cut(s)	10, 753, 875, 971
SexAI	ACCWGGT	1 cut(s)	8
SfaNI	GCATC	2 cut(s)	367, 685
Sfr274I	CTCGAG	1 cut(s)	819
SlaI	CTCGAG	1 cut(s)	819
SmlI	CTYRAG	2 cut(s)	607, 819
SmoI	CTYRAG	2 cut(s)	607, 819
SpeI	ACTAGT	3 cut(s)	296, 302, 806
Sse9I	AATT	6 cut(s)	35, 129, 212, 353, 565, 987
SsiI	CCGC	6 cut(s)	126, 174, 381, 666, 909, 1048
SspI	AATATT	2 cut(s)	146, 244
SspMI	CTAG	4 cut(s)	297, 303, 807, 1019
StyD4I	CCNGG	4 cut(s)	8, 751, 873, 969
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	3 cut(s)	337, 372, 820
TasI	AATT	6 cut(s)	35, 129, 212, 353, 565, 987
TatI	WGTACW	2 cut(s)	299, 798
TauI	GCSGC	2 cut(s)	383, 669
TfiI	GAWTC	2 cut(s)	619, 962
Tru1I	TTAA	2 cut(s)	246, 812
Tru9I	TTAA	2 cut(s)	246, 812
TscAI	CASTG	1 cut(s)	514
TseFI	GTSAC	1 cut(s)	485
TseI	GCWGC	2 cut(s)	899, 902
Tsp45I	GTSAC	1 cut(s)	485
TspDTI	ATGAA	5 cut(s)	93, 716, 732, 909, 939
TspRI	CASTG	1 cut(s)	514
VspI	ATTAAT	1 cut(s)	246
XceI	RCATGY	2 cut(s)	586, 953
XhoI	CTCGAG	1 cut(s)	819
XmnI	GAANNNNTTC	1 cut(s)	723
XspI	CTAG	4 cut(s)	297, 303, 807, 1019
ZrmI	AGTACT	2 cut(s)	301, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.