Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Forward (+)

4544746 .. 4547810

Gene Structure 3065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g06530.12

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGAACCTCGCGTTGGGAATAAGTTTCGGCTCGGCCGGAAGATCGGCAGCGGCTCGTTCGGAGAGATCTATCTGGGTACAAATATTCAGACGAACGAAGAGGTCGCGATTAAGCTTGAAAGTGTGAAGACAAAACACCCTCAGCTGCTGTATGAATCCAAGTTATACAGGATCCTAGCAGGAGGAACTGGGATTCCAAATGTGAGGTGGTTTGGAGTTGAAGGAGACTATAACGTTTTGGTTATGGATTTACTGGGCCCTAGTCTTGAAGACTTATTCAACTTCTGCAGTAGGAAACTTTCTTTGAAGACCGTTCTTATGCTGGCTGATCAAATGATCAGTCGTGTTGAATTTGTTCACAGTAAGTCATTTCTACATCGAGATATCAAGCCAGACAATTTTCTTATGGGCTTGGGAAGGCGTGCAAATCAGGTGTACATGATAGACTTTGGTCTGGCTAAGAAATACAGAGATAGTACAACCCGTCAGCATATTCCTTATAGGGAAAACAAGAATTTGACTGGAACTGCAAGATATGCAAGCATGAACACTCACCTTGGAATTGAGCAAAGCCGGAGGGATGATTTAGAATCTCTTGGTTATGTCCTTATGTATTTCCTTAGAGGAAGTCTTCCTTGGCAGGGACTAAAAGCGGGAACTAAGAAGCAGAAGTATGAGAGAATTAGTGAGAAAAAGGTTTCTACTTCAATTGAGGCATTATGTCGGGGTTATCCGACAGAGTTTGCTTCGTATTTCCATTACTGTCGCTCTCTACGGTTCGATGATAAGCCAGACTATGTTTATTTAAAAAAAATATTCAGGGATGTCTTTATTCGTGAAGGCTTTCAGTTTGATTATGTGTTTGACTGGACAATTTTGAAGTATCAGCAATCACAGCTGGCTGTTCCTCCAACCCGTGCCCTTGCTGGTGCTGGAACAAGTTCTGGGATGCCCCATGCTGCTGTTAATGCGGACAGACTGACAGGTGAGGAAGACGGGCGGCCAACTGGTCTAACATCATTGGATTCCTCTCGGCGGAGAATACCTGGACCGGCTCTCAATTCCATGAGCCTTTCGAGGCAGAAGAATCCAATTGCTAATGATGCTTCATTAACTAGAGAGACGTCAAATAGCAACATTTTTGGCCGGTCAGCCGGATCGATCAAGGAGAGTTGCTGTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

395

Amino Acids

44.68

Weight (kDa)

9.54

Isoelectric Point (pI)

41.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1127
AccII	CGCG	2 cut(s)	12, 107
AciI	CCGC	5 cut(s)	51, 653, 971, 1000, 1036
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	3 cut(s)	166, 179, 1165
AcoI	YGGCCR	3 cut(s)	34, 1001, 1144
AcsI	RAATTY	2 cut(s)	350, 514
AcyI	GRCGYC	1 cut(s)	1124
AfaI	GTAC	3 cut(s)	79, 437, 478
AfiI	CCNNNNNNNGG	3 cut(s)	14, 641, 1035
AgsI	TTSAA	8 cut(s)	119, 221, 269, 280, 307, 350, 708, 880
AjnI	CCWGG	1 cut(s)	1045
AjuI	GAANNNNNNNTTGG	3 cut(s)	29, 619, 651
AloI	GAACNNNNNNTCC	2 cut(s)	178, 210
AluBI	AGCT	3 cut(s)	115, 145, 898
AluI	AGCT	3 cut(s)	115, 145, 898
Alw26I	GTCTC	2 cut(s)	219, 1115
AlwI	GGATC	3 cut(s)	166, 179, 1165
AlwNI	CAGNNNCTG	1 cut(s)	148
AoxI	GGCC	4 cut(s)	34, 256, 1001, 1144
ApaI	GGGCCC	1 cut(s)	260
ApeKI	GCWGC	3 cut(s)	48, 145, 959
ApoI	RAATTY	2 cut(s)	350, 514
ArsI	GACNNNNNNTTYG	2 cut(s)	325, 357
Asp700I	GAANNNNTTC	3 cut(s)	354, 843, 940
AspS9I	GGNCC	3 cut(s)	256, 257, 1049
AsuHPI	GGTGA	2 cut(s)	545, 998
AvaII	GGWCC	1 cut(s)	1049
BaeGI	GKGCMC	2 cut(s)	260, 922
BamHI	GGATCC	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	260
BbsI	GAAGAC	5 cut(s)	134, 276, 314, 623, 999
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	3 cut(s)	60, 132, 946
BciT130I	CCWGG	1 cut(s)	1047
BclI	TGATCA	2 cut(s)	328, 336
BcoDI	GTCTC	2 cut(s)	219, 1115
BfaI	CTAG	4 cut(s)	176, 261, 1116, 1183
BfmI	CTRYAG	1 cut(s)	286
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	5 cut(s)	49, 52, 146, 960, 1001
BlsI	GCNGC	5 cut(s)	50, 53, 147, 961, 1002
Bme1390I	CCNGG	1 cut(s)	1047
Bme18I	GGWCC	1 cut(s)	1049
BmgT120I	GGNCC	3 cut(s)	256, 257, 1049
BmiI	GGNNCC	3 cut(s)	6, 173, 258
BmrFI	CCNGG	1 cut(s)	1047
BmrI	ACTGGG	2 cut(s)	198, 263
BmsI	GCATC	2 cut(s)	939, 1093
BmuI	ACTGGG	2 cut(s)	198, 263
BoxI	GACNNNNGTC	1 cut(s)	450
BpiI	GAAGAC	5 cut(s)	134, 276, 314, 623, 999
Bpu10I	CCTNAGC	1 cut(s)	141
Bsa29I	ATCGAT	1 cut(s)	1160
BsaHI	GRCGYC	1 cut(s)	1124
BsaJI	CCNNGG	2 cut(s)	556, 635
Bsc4I	CCNNNNNNNGG	3 cut(s)	14, 641, 1035
Bse118I	RCCGGY	2 cut(s)	1051, 1146
Bse1I	ACTGG	5 cut(s)	193, 258, 526, 872, 1012
BseBI	CCWGG	1 cut(s)	1047
BseCI	ATCGAT	1 cut(s)	1160
BseDI	CCNNGG	2 cut(s)	556, 635
BseGI	GGATG	3 cut(s)	586, 829, 954
BseLI	CCNNNNNNNGG	3 cut(s)	14, 641, 1035
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	5 cut(s)	193, 258, 526, 872, 1012
BseSI	GKGCMC	2 cut(s)	260, 922
BseX3I	CGGCCG	1 cut(s)	34
BseXI	GCAGC	3 cut(s)	60, 132, 946
Bsh1236I	CGCG	2 cut(s)	12, 107
Bsh1285I	CGRYCG	1 cut(s)	37
BshFI	GGCC	4 cut(s)	36, 258, 1003, 1146
BshVI	ATCGAT	1 cut(s)	1160
BsiEI	CGRYCG	1 cut(s)	37
BsiSI	CCGG	5 cut(s)	37, 574, 1052, 1147, 1155
BslFI	GGGAC	1 cut(s)	657
BslI	CCNNNNNNNGG	3 cut(s)	14, 641, 1035
BsmAI	GTCTC	2 cut(s)	219, 1115
BsmBI	CGTCTC	1 cut(s)	1115
BsmFI	GGGAC	1 cut(s)	657
BsnI	GGCC	4 cut(s)	36, 258, 1003, 1146
Bsp120I	GGGCCC	1 cut(s)	256
Bsp1286I	GDGCHC	2 cut(s)	260, 922
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
Bsp68I	TCGCGA	1 cut(s)	107
BspACI	CCGC	5 cut(s)	51, 653, 971, 1000, 1036
BspANI	GGCC	4 cut(s)	36, 258, 1003, 1146
BspCNI	CTCAG	1 cut(s)	154
BspDI	ATCGAT	1 cut(s)	1160
BspFNI	CGCG	2 cut(s)	12, 107
BspLI	GGNNCC	3 cut(s)	6, 173, 258
BspMAI	CTGCAG	1 cut(s)	290
BspPI	GGATC	3 cut(s)	166, 179, 1165
BsrFI	RCCGGY	2 cut(s)	1051, 1146
BsrGI	TGTACA	1 cut(s)	435
BsrI	ACTGG	5 cut(s)	193, 258, 526, 872, 1012
BssAI	RCCGGY	2 cut(s)	1051, 1146
BssECI	CCNNGG	2 cut(s)	556, 635
BssMI	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
BssNI	GRCGYC	1 cut(s)	1124
BssT1I	CCWWGG	2 cut(s)	556, 635
Bst2UI	CCWGG	1 cut(s)	1047
Bst4CI	ACNGT	4 cut(s)	313, 362, 764, 777
Bst6I	CTCTTC	1 cut(s)	93
BstACI	GRCGYC	1 cut(s)	1124
BstAPI	GCANNNNNTGC	1 cut(s)	536
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	324, 423, 541, 900
BstDEI	CTNAG	4 cut(s)	141, 459, 620, 660
BstF5I	GGATG	3 cut(s)	586, 829, 954
BstFNI	CGCG	2 cut(s)	12, 107
BstKTI	GATC	7 cut(s)	45, 69, 174, 331, 339, 1160, 1164
BstMAI	GTCTC	2 cut(s)	219, 1115
BstMBI	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
BstMCI	CGRYCG	1 cut(s)	37
BstMWI	GCNNNNNNNGC	4 cut(s)	536, 895, 968, 1103
BstNI	CCWGG	1 cut(s)	1047
BstPAI	GACNNNNGTC	1 cut(s)	450
BstSCI	CCNGG	1 cut(s)	1045
BstSFI	CTRYAG	1 cut(s)	286
BstSLI	GKGCMC	2 cut(s)	260, 922
BstUI	CGCG	2 cut(s)	12, 107
BstV1I	GCAGC	3 cut(s)	60, 132, 946
BstV2I	GAAGAC	5 cut(s)	134, 276, 314, 623, 999
BstX2I	RGATCY	2 cut(s)	66, 171
BstYI	RGATCY	2 cut(s)	66, 171
BstZI	CGGCCG	1 cut(s)	34
Bsu15I	ATCGAT	1 cut(s)	1160
BsuRI	GGCC	4 cut(s)	36, 258, 1003, 1146
BsuTUI	ATCGAT	1 cut(s)	1160
BtsCI	GGATG	3 cut(s)	586, 829, 954
BtuMI	TCGCGA	1 cut(s)	107
Cac8I	GCNNGC	4 cut(s)	324, 423, 541, 900
CaiI	CAGNNNCTG	1 cut(s)	148
Cfr10I	RCCGGY	2 cut(s)	1051, 1146
Cfr13I	GGNCC	3 cut(s)	256, 257, 1049
ClaI	ATCGAT	1 cut(s)	1160
Csp6I	GTAC	3 cut(s)	78, 436, 477
CviAII	CATG	4 cut(s)	439, 544, 956, 1066
CviQI	GTAC	3 cut(s)	78, 436, 477
DdeI	CTNAG	4 cut(s)	141, 459, 620, 660
DpnI	GATC	7 cut(s)	44, 68, 173, 330, 338, 1159, 1163
DpnII	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
DraI	TTTAAA	1 cut(s)	807
EaeI	YGGCCR	3 cut(s)	34, 1001, 1144
EagI	CGGCCG	1 cut(s)	34
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	1051
EclXI	CGGCCG	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	556, 635
Eco24I	GRGCYC	1 cut(s)	260
Eco32I	GATATC	1 cut(s)	385
Eco47I	GGWCC	1 cut(s)	1049
Eco52I	CGGCCG	1 cut(s)	34
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	1 cut(s)	1045
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	556, 635
EcoT38I	GRGCYC	1 cut(s)	260
ErhI	CCWWGG	2 cut(s)	556, 635
Esp3I	CGTCTC	1 cut(s)	1115
FaeI	CATG	4 cut(s)	442, 547, 959, 1069
FalI	AAGNNNNNCTT	2 cut(s)	619, 651
FaqI	GGGAC	1 cut(s)	657
FatI	CATG	4 cut(s)	438, 543, 955, 1065
FauI	CCCGC	1 cut(s)	646
FbaI	TGATCA	2 cut(s)	328, 336
Fnu4HI	GCNGC	5 cut(s)	49, 52, 146, 960, 1001
FokI	GGATG	3 cut(s)	593, 836, 961
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	5 cut(s)	49, 52, 146, 960, 1001
FspBI	CTAG	4 cut(s)	176, 261, 1116, 1183
GluI	GCNGC	5 cut(s)	49, 52, 146, 960, 1001
HaeIII	GGCC	4 cut(s)	36, 258, 1003, 1146
HapII	CCGG	5 cut(s)	37, 574, 1052, 1147, 1155
Hin1I	GRCGYC	1 cut(s)	1124
Hin1II	CATG	4 cut(s)	442, 547, 959, 1069
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	5 cut(s)	155, 193, 590, 1025, 1087
HpaII	CCGG	5 cut(s)	37, 574, 1052, 1147, 1155
HphI	GGTGA	2 cut(s)	545, 998
Hpy166II	GTNNAC	2 cut(s)	358, 436
Hpy188I	TCNGA	3 cut(s)	62, 90, 735
Hpy188III	TCNNGA	4 cut(s)	106, 266, 380, 836
Hpy8I	GTNNAC	2 cut(s)	358, 436
HpyAV	CCTTC	3 cut(s)	215, 411, 833
HpyCH4III	ACNGT	4 cut(s)	313, 362, 764, 777
HpyCH4IV	ACGT	2 cut(s)	234, 1124
HpyCH4V	TGCA	4 cut(s)	288, 425, 530, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	536, 895, 968, 1103
HpyF3I	CTNAG	4 cut(s)	141, 459, 620, 660
HpySE526I	ACGT	2 cut(s)	234, 1124
Hsp92I	GRCGYC	1 cut(s)	1124
Hsp92II	CATG	4 cut(s)	442, 547, 959, 1069
Ksp22I	TGATCA	2 cut(s)	328, 336
Kzo9I	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
Lsp1109I	GCAGC	3 cut(s)	60, 132, 946
LweI	GCATC	2 cut(s)	939, 1093
MaeI	CTAG	4 cut(s)	176, 261, 1116, 1183
MaeII	ACGT	2 cut(s)	234, 1124
MalI	GATC	7 cut(s)	44, 68, 173, 330, 338, 1159, 1163
MboI	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
MboII	GAAGA	8 cut(s)	52, 110, 139, 281, 319, 623, 1004, 1096
MfeI	CAATTG	2 cut(s)	708, 1092
MflI	RGATCY	2 cut(s)	66, 171
MhlI	GDGCHC	2 cut(s)	260, 922
MluCI	AATT	9 cut(s)	350, 397, 514, 561, 681, 708, 873, 1060, 1092
MmeI	TCCRAC	2 cut(s)	758, 935
MroXI	GAANNNNTTC	3 cut(s)	354, 843, 940
MseI	TTAA	4 cut(s)	111, 806, 966, 1112
MspA1I	CMGCKG	3 cut(s)	51, 145, 898
MspI	CCGG	5 cut(s)	37, 574, 1052, 1147, 1155
MspR9I	CCNGG	1 cut(s)	1047
MunI	CAATTG	2 cut(s)	708, 1092
MvaI	CCWGG	1 cut(s)	1047
MvnI	CGCG	2 cut(s)	12, 107
MwoI	GCNNNNNNNGC	4 cut(s)	536, 895, 968, 1103
NdeII	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
NlaIII	CATG	4 cut(s)	442, 547, 959, 1069
NlaIV	GGNNCC	3 cut(s)	6, 173, 258
NmeAIII	GCCGAG	2 cut(s)	12, 1012
NruI	TCGCGA	1 cut(s)	107
PdmI	GAANNNNTTC	3 cut(s)	354, 843, 940
PfeI	GAWTC	5 cut(s)	155, 193, 590, 1025, 1087
PkrI	GCNGC	5 cut(s)	50, 53, 147, 961, 1002
PshAI	GACNNNNGTC	1 cut(s)	450
Psp1406I	AACGTT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	1045
PspGI	CCWGG	1 cut(s)	1045
PspN4I	GGNNCC	3 cut(s)	6, 173, 258
PspOMI	GGGCCC	1 cut(s)	256
PspPI	GGNCC	3 cut(s)	256, 257, 1049
PstI	CTGCAG	1 cut(s)	290
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	66, 171
PvuII	CAGCTG	2 cut(s)	145, 898
RruI	TCGCGA	1 cut(s)	107
RsaI	GTAC	3 cut(s)	79, 437, 478
RsaNI	GTAC	3 cut(s)	78, 436, 477
SaqAI	TTAA	4 cut(s)	111, 806, 966, 1112
SatI	GCNGC	5 cut(s)	49, 52, 146, 960, 1001
Sau3AI	GATC	7 cut(s)	42, 66, 171, 328, 336, 1157, 1161
Sau96I	GGNCC	3 cut(s)	256, 257, 1049
ScrFI	CCNGG	1 cut(s)	1047
SduI	GDGCHC	2 cut(s)	260, 922
SfaNI	GCATC	2 cut(s)	939, 1093
SfcI	CTRYAG	1 cut(s)	286
SinI	GGWCC	1 cut(s)	1049
Sse9I	AATT	9 cut(s)	350, 397, 514, 561, 681, 708, 873, 1060, 1092
SsiI	CCGC	5 cut(s)	51, 653, 971, 1000, 1036
SspI	AATATT	2 cut(s)	85, 816
SspMI	CTAG	4 cut(s)	176, 261, 1116, 1183
StyD4I	CCNGG	1 cut(s)	1045
StyI	CCWWGG	2 cut(s)	556, 635
TaaI	ACNGT	4 cut(s)	313, 362, 764, 777
TaiI	ACGT	2 cut(s)	237, 1127
TaqI	TCGA	4 cut(s)	379, 780, 1076, 1160
TasI	AATT	9 cut(s)	350, 397, 514, 561, 681, 708, 873, 1060, 1092
TatI	WGTACW	2 cut(s)	435, 476
TauI	GCSGC	2 cut(s)	54, 1003
TfiI	GAWTC	5 cut(s)	155, 193, 590, 1025, 1087
Tru1I	TTAA	4 cut(s)	111, 806, 966, 1112
Tru9I	TTAA	4 cut(s)	111, 806, 966, 1112
TseI	GCWGC	3 cut(s)	48, 145, 959
TspDTI	ATGAA	3 cut(s)	168, 560, 1098
VpaK11BI	GGWCC	1 cut(s)	1049
XapI	RAATTY	2 cut(s)	350, 514
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmnI	GAANNNNTTC	3 cut(s)	354, 843, 940
XspI	CTAG	4 cut(s)	176, 261, 1116, 1183
ZraI	GACGTC	1 cut(s)	1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.