Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Forward (+)

6584517 .. 6586907

Gene Structure 2391 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATTTGCTGGGTCCTAGTCTTGAAGACTTATTTAACTTCTGCAGTAGGAAACTTTCTTTGAAAACAGTTCTTATGCTGGCAGATCAAATGATCAATCGTGTTGAATTTGTTCATTCCAAATCCTTTCTTCATCGTGATATCAAGCCAGACAATTTTCTCATGGGATTAGGAAGGCGTGCAAATCAGGTATACATGATTGATTTTGGTCTGGCTAAGAAATATCGGGATAGTACAACCCGTCAACATATTCCATATAGAGAAAACAAGAATCTGACTGGAACAGCAAGATATGCAAGCATGAACACCCACCTTGGGATTGAGCAAAGCCGGAGGGATGATTTGGAATCTCTTGGTTACGTCCTGATGTACTTCCTTAAGGGAAGTCTTCCTTGGCAGGGACTAAAAGCAGGAACTAAGAAACAGAAATATGAAAAAATTAGTGAGAAAAAGGTTTCTACTTCAATTGAGGCCTTGTGTCGTGGTTATCCAACAGAGTTTGCATCATATTTCCATTACTGTCGCTCACTGCGATTCGATGATAAGCCAGACTATGTTTATCTGAAAAAGATATTCCGTGATGTCTTCATTCGTGAAGGTTTCCAGTTTGATTATGTTTTTGACTGGACAATTTTGAAGTATCAGCAATCACAGCTGGCTACACCTCCCACCCGTGCCCTTGGTGCTGGAACTAGTTCTGGAATGCCGCATGCTCCTGCCATTGTGGACAGGCAGACTGGTGAGGAAGATGGGCGGATAGCCGGTTTATCCTCACTGGATGCCTCTCGGCGGAGAATACCGGGACCAGCTCTGAATTCTGCGAGTGTGTCAAGGCAGAGAAATTCAATTGCTATGGATTCTGCGATAACTAGAGAGAATAATCTGTTATCAAATCCCAATATGTTGGGCCGATCTAGTGGATCATCAAGGAGACCTGCTGTTTCCAGCAGTCGTGAGGGATTTGGAAGGAGCGAGTCTGAACACCGTGTTCGCACAACCGATGCTAGTCCTGGAACAGGCCACAGAATTTCGAGTGGCCAAAGAAGTTCACCGGTTGAGTCATCGGACCCTACTCGTACCGGAAGACATAGCTCACAAATTAGAAACTATGAAACTGCCATTAGAGGCCTTGAAGGCCTGCAGTTAGACCATGAGGAGAGGATCCATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

390

Amino Acids

44.18

Weight (kDa)

9.68

Isoelectric Point (pI)

51.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	8 - 151	1.8e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 146	4.4e-16	Protein kinase domain
Pkinase_fungal	PF17667	31 - 125	1.1e-08	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	943
AccI	GTMKAC	1 cut(s)	192
AciI	CCGC	3 cut(s)	707, 754, 790
AclWI	GGATC	3 cut(s)	928, 1156, 1169
AcoI	YGGCCR	1 cut(s)	1036
AcsI	RAATTY	4 cut(s)	107, 814, 841, 1026
AfaI	GTAC	3 cut(s)	235, 371, 1078
AfiI	CCNNNNNNNGG	4 cut(s)	315, 398, 789, 1016
AflII	CTTAAG	1 cut(s)	377
AgeI	ACCGGT	1 cut(s)	1051
AgsI	TTSAA	7 cut(s)	26, 64, 107, 465, 637, 846, 1133
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	1009
AjuI	GAANNNNNNNTTGG	2 cut(s)	376, 408
AluBI	AGCT	3 cut(s)	655, 809, 1092
AluI	AGCT	3 cut(s)	655, 809, 1092
Alw26I	GTCTC	1 cut(s)	925
AlwI	GGATC	3 cut(s)	928, 1156, 1169
AoxI	GGCC	6 cut(s)	471, 907, 1018, 1036, 1126, 1135
ApoI	RAATTY	4 cut(s)	107, 814, 841, 1026
AsiGI	ACCGGT	1 cut(s)	1051
Asp700I	GAANNNNTTC	2 cut(s)	111, 694
AspS9I	GGNCC	4 cut(s)	14, 803, 907, 1066
AsuC2I	CCSGG	1 cut(s)	801
AsuHPI	GGTGA	2 cut(s)	752, 1041
AvaII	GGWCC	3 cut(s)	14, 803, 1066
BaeGI	GKGCMC	1 cut(s)	679
BalI	TGGCCA	1 cut(s)	1038
BamHI	GGATCC	1 cut(s)	1161
BbsI	GAAGAC	4 cut(s)	33, 380, 577, 1090
BccI	CCATC	1 cut(s)	743
BciT130I	CCWGG	1 cut(s)	1011
BclI	TGATCA	1 cut(s)	93
BcnI	CCSGG	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	925
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	6 cut(s)	18, 693, 870, 915, 1005, 1171
BfmI	CTRYAG	2 cut(s)	43, 1139
BfrI	CTTAAG	1 cut(s)	377
BfuAI	ACCTGC	1 cut(s)	943
BglI	GCCNNNNNGGC	1 cut(s)	1134
BisI	GCNGC	1 cut(s)	707
BlsI	GCNGC	1 cut(s)	708
Bme1390I	CCNGG	2 cut(s)	801, 1011
Bme18I	GGWCC	3 cut(s)	14, 803, 1066
BmgT120I	GGNCC	4 cut(s)	14, 803, 907, 1066
BmiI	GGNNCC	4 cut(s)	15, 804, 1068, 1163
BmrFI	CCNGG	2 cut(s)	801, 1011
BmsI	GCATC	3 cut(s)	512, 769, 991
BpiI	GAAGAC	4 cut(s)	33, 380, 577, 1090
BpuMI	CCSGG	1 cut(s)	801
BsaI	GGTCTC	1 cut(s)	925
BsaJI	CCNNGG	3 cut(s)	313, 392, 679
BsaWI	WCCGGW	2 cut(s)	1051, 1079
Bsc4I	CCNNNNNNNGG	4 cut(s)	315, 398, 789, 1016
Bse118I	RCCGGY	2 cut(s)	761, 1051
Bse1I	ACTGG	5 cut(s)	283, 604, 629, 742, 780
BseBI	CCWGG	1 cut(s)	1011
BseDI	CCNNGG	3 cut(s)	313, 392, 679
BseGI	GGATG	2 cut(s)	343, 784
BseLI	CCNNNNNNNGG	4 cut(s)	315, 398, 789, 1016
BseNI	ACTGG	5 cut(s)	283, 604, 629, 742, 780
BseRI	GAGGAG	1 cut(s)	1169
BseSI	GKGCMC	1 cut(s)	679
BseYI	CCCAGC	1 cut(s)	10
BshFI	GGCC	6 cut(s)	473, 909, 1020, 1038, 1128, 1137
BshTI	ACCGGT	1 cut(s)	1051
BsiSI	CCGG	5 cut(s)	331, 762, 800, 1052, 1080
BslFI	GGGAC	2 cut(s)	414, 816
BslI	CCNNNNNNNGG	4 cut(s)	315, 398, 789, 1016
BsmAI	GTCTC	1 cut(s)	925
BsmFI	GGGAC	2 cut(s)	414, 816
BsmI	GAATGC	1 cut(s)	708
BsnI	GGCC	6 cut(s)	473, 909, 1020, 1038, 1128, 1137
Bso31I	GGTCTC	1 cut(s)	925
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	5 cut(s)	85, 93, 911, 920, 1161
BspACI	CCGC	3 cut(s)	707, 754, 790
BspANI	GGCC	6 cut(s)	473, 909, 1020, 1038, 1128, 1137
BspLI	GGNNCC	4 cut(s)	15, 804, 1068, 1163
BspMAI	CTGCAG	2 cut(s)	47, 1143
BspMI	ACCTGC	1 cut(s)	943
BspPI	GGATC	3 cut(s)	928, 1156, 1169
BspTI	CTTAAG	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	925
BsrFI	RCCGGY	2 cut(s)	761, 1051
BsrI	ACTGG	5 cut(s)	283, 604, 629, 742, 780
BssAI	RCCGGY	2 cut(s)	761, 1051
BssECI	CCNNGG	3 cut(s)	313, 392, 679
BssMI	GATC	5 cut(s)	85, 93, 911, 920, 1161
BssNAI	GTATAC	1 cut(s)	193
BssT1I	CCWWGG	3 cut(s)	313, 392, 679
Bst1107I	GTATAC	1 cut(s)	193
Bst2UI	CCWGG	1 cut(s)	1011
Bst4CI	ACNGT	3 cut(s)	70, 521, 986
BstAFI	CTTAAG	1 cut(s)	377
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	6 cut(s)	81, 180, 298, 657, 711, 1139
BstDEI	CTNAG	2 cut(s)	216, 417
BstENI	CCTNNNNNAGG	1 cut(s)	1014
BstF5I	GGATG	2 cut(s)	343, 784
BstKTI	GATC	5 cut(s)	88, 96, 914, 923, 1164
BstMAI	GTCTC	1 cut(s)	925
BstMBI	GATC	5 cut(s)	85, 93, 911, 920, 1161
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 652, 683, 1134
BstNI	CCWGG	1 cut(s)	1011
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	799, 1009
BstSFI	CTRYAG	2 cut(s)	43, 1139
BstSLI	GKGCMC	1 cut(s)	679
BstV2I	GAAGAC	4 cut(s)	33, 380, 577, 1090
BstX2I	RGATCY	1 cut(s)	1161
BstXI	CCANNNNNNTGG	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	1161
BstZ17I	GTATAC	1 cut(s)	193
BsuRI	GGCC	6 cut(s)	473, 909, 1020, 1038, 1128, 1137
BtsCI	GGATG	2 cut(s)	343, 784
BtsI	GCAGTG	1 cut(s)	527
BtsIMutI	CAGTG	2 cut(s)	527, 773
BveI	ACCTGC	1 cut(s)	943
Cac8I	GCNNGC	6 cut(s)	81, 180, 298, 657, 711, 1139
Cfr10I	RCCGGY	2 cut(s)	761, 1051
Cfr13I	GGNCC	4 cut(s)	14, 803, 907, 1066
Csp6I	GTAC	3 cut(s)	234, 370, 1077
CspAI	ACCGGT	1 cut(s)	1051
CviAII	CATG	5 cut(s)	163, 196, 301, 710, 1151
CviQI	GTAC	3 cut(s)	234, 370, 1077
DdeI	CTNAG	2 cut(s)	216, 417
DpnI	GATC	5 cut(s)	87, 95, 913, 922, 1163
DpnII	GATC	5 cut(s)	85, 93, 911, 920, 1161
EaeI	YGGCCR	1 cut(s)	1036
EciI	GGCGGA	2 cut(s)	769, 805
Eco130I	CCWWGG	3 cut(s)	313, 392, 679
Eco147I	AGGCCT	3 cut(s)	473, 1128, 1137
Eco31I	GGTCTC	1 cut(s)	925
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	3 cut(s)	14, 803, 1066
EcoNI	CCTNNNNNAGG	1 cut(s)	1014
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRI	GAATTC	1 cut(s)	814
EcoRII	CCWGG	1 cut(s)	1009
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	3 cut(s)	313, 392, 679
ErhI	CCWWGG	3 cut(s)	313, 392, 679
FaeI	CATG	5 cut(s)	166, 199, 304, 713, 1154
FalI	AAGNNNNNCTT	2 cut(s)	376, 408
FaqI	GGGAC	2 cut(s)	414, 816
FatI	CATG	5 cut(s)	162, 195, 300, 709, 1150
FbaI	TGATCA	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	707
FokI	GGATG	2 cut(s)	350, 791
Fsp4HI	GCNGC	1 cut(s)	707
FspBI	CTAG	6 cut(s)	18, 693, 870, 915, 1005, 1171
GluI	GCNGC	1 cut(s)	707
GsaI	CCCAGC	1 cut(s)	14
HaeIII	GGCC	6 cut(s)	473, 909, 1020, 1038, 1128, 1137
HapII	CCGG	5 cut(s)	331, 762, 800, 1052, 1080
Hin1II	CATG	5 cut(s)	166, 199, 304, 713, 1154
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	6 cut(s)	271, 347, 534, 857, 974, 1058
HpaII	CCGG	5 cut(s)	331, 762, 800, 1052, 1080
HphI	GGTGA	2 cut(s)	752, 1041
Hpy166II	GTNNAC	4 cut(s)	193, 245, 727, 1049
Hpy188I	TCNGA	5 cut(s)	276, 564, 813, 979, 1066
Hpy188III	TCNNGA	7 cut(s)	23, 137, 227, 364, 593, 699, 953
Hpy8I	GTNNAC	4 cut(s)	193, 245, 727, 1049
HpyAV	CCTTC	4 cut(s)	168, 590, 960, 1127
HpyCH4III	ACNGT	3 cut(s)	70, 521, 986
HpyCH4IV	ACGT	1 cut(s)	360
HpyCH4V	TGCA	5 cut(s)	45, 182, 296, 503, 1141
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 652, 683, 1134
HpyF3I	CTNAG	2 cut(s)	216, 417
HpySE526I	ACGT	1 cut(s)	360
Hsp92II	CATG	5 cut(s)	166, 199, 304, 713, 1154
Ksp22I	TGATCA	1 cut(s)	93
Kzo9I	GATC	5 cut(s)	85, 93, 911, 920, 1161
LmnI	GCTCC	2 cut(s)	718, 969
LweI	GCATC	3 cut(s)	512, 769, 991
MaeI	CTAG	6 cut(s)	18, 693, 870, 915, 1005, 1171
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	5 cut(s)	87, 95, 913, 922, 1163
MboI	GATC	5 cut(s)	85, 93, 911, 920, 1161
MboII	GAAGA	6 cut(s)	38, 122, 380, 577, 758, 1095
MfeI	CAATTG	2 cut(s)	465, 846
MflI	RGATCY	1 cut(s)	1161
MhlI	GDGCHC	1 cut(s)	679
MlsI	TGGCCA	1 cut(s)	1038
MluNI	TGGCCA	1 cut(s)	1038
MlyI	GAGTC	2 cut(s)	983, 1067
MmeI	TCCRAC	1 cut(s)	515
Mox20I	TGGCCA	1 cut(s)	1038
MroXI	GAANNNNTTC	2 cut(s)	111, 694
MscI	TGGCCA	1 cut(s)	1038
MseI	TTAA	2 cut(s)	36, 378
Msp20I	TGGCCA	1 cut(s)	1038
MspA1I	CMGCKG	1 cut(s)	655
MspCI	CTTAAG	1 cut(s)	377
MspI	CCGG	5 cut(s)	331, 762, 800, 1052, 1080
MspR9I	CCNGG	2 cut(s)	801, 1011
MunI	CAATTG	2 cut(s)	465, 846
Mva1269I	GAATGC	1 cut(s)	708
MvaI	CCWGG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	4 cut(s)	293, 652, 683, 1134
NciI	CCSGG	1 cut(s)	801
NdeII	GATC	5 cut(s)	85, 93, 911, 920, 1161
NlaIII	CATG	5 cut(s)	166, 199, 304, 713, 1154
NlaIV	GGNNCC	4 cut(s)	15, 804, 1068, 1163
NmeAIII	GCCGAG	1 cut(s)	766
NspI	RCATGY	1 cut(s)	713
PaeI	GCATGC	1 cut(s)	713
PceI	AGGCCT	3 cut(s)	473, 1128, 1137
PcsI	WCGNNNNNNNCGW	1 cut(s)	529
PctI	GAATGC	1 cut(s)	708
PdmI	GAANNNNTTC	2 cut(s)	111, 694
PfeI	GAWTC	4 cut(s)	271, 347, 534, 857
PfoI	TCCNGGA	1 cut(s)	1009
PinAI	ACCGGT	1 cut(s)	1051
PkrI	GCNGC	1 cut(s)	708
PleI	GAGTC	2 cut(s)	982, 1066
PpsI	GAGTC	2 cut(s)	982, 1066
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	1009
PspFI	CCCAGC	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	1009
PspN4I	GGNNCC	4 cut(s)	15, 804, 1068, 1163
PspPI	GGNCC	4 cut(s)	14, 803, 907, 1066
PspPPI	RGGWCCY	1 cut(s)	14
PstI	CTGCAG	2 cut(s)	47, 1143
PsuI	RGATCY	1 cut(s)	1161
PvuII	CAGCTG	1 cut(s)	655
RsaI	GTAC	3 cut(s)	235, 371, 1078
RsaNI	GTAC	3 cut(s)	234, 370, 1077
SaqAI	TTAA	2 cut(s)	36, 378
SatI	GCNGC	1 cut(s)	707
Sau3AI	GATC	5 cut(s)	85, 93, 911, 920, 1161
Sau96I	GGNCC	4 cut(s)	14, 803, 907, 1066
SchI	GAGTC	2 cut(s)	983, 1067
ScrFI	CCNGG	2 cut(s)	801, 1011
SduI	GDGCHC	1 cut(s)	679
SfaNI	GCATC	3 cut(s)	512, 769, 991
SfcI	CTRYAG	2 cut(s)	43, 1139
SfiI	GGCCNNNNNGGCC	1 cut(s)	1134
SinI	GGWCC	3 cut(s)	14, 803, 1066
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
SpeI	ACTAGT	1 cut(s)	692
SphI	GCATGC	1 cut(s)	713
SseBI	AGGCCT	3 cut(s)	473, 1128, 1137
SsiI	CCGC	3 cut(s)	707, 754, 790
SspMI	CTAG	6 cut(s)	18, 693, 870, 915, 1005, 1171
StuI	AGGCCT	3 cut(s)	473, 1128, 1137
StyD4I	CCNGG	2 cut(s)	799, 1009
StyI	CCWWGG	3 cut(s)	313, 392, 679
TaaI	ACNGT	3 cut(s)	70, 521, 986
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	2 cut(s)	537, 1031
TatI	WGTACW	2 cut(s)	233, 369
TauI	GCSGC	1 cut(s)	709
TfiI	GAWTC	4 cut(s)	271, 347, 534, 857
Tru1I	TTAA	2 cut(s)	36, 378
Tru9I	TTAA	2 cut(s)	36, 378
TscAI	CASTG	2 cut(s)	534, 780
TspDTI	ATGAA	6 cut(s)	104, 122, 317, 447, 577, 1125
TspGWI	ACGGA	1 cut(s)	566
TspRI	CASTG	2 cut(s)	534, 780
Vha464I	CTTAAG	1 cut(s)	377
VpaK11BI	GGWCC	3 cut(s)	14, 803, 1066
XagI	CCTNNNNNAGG	1 cut(s)	1014
XapI	RAATTY	4 cut(s)	107, 814, 841, 1026
XceI	RCATGY	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	192
XmnI	GAANNNNTTC	2 cut(s)	111, 694
XspI	CTAG	6 cut(s)	18, 693, 870, 915, 1005, 1171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.