Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002126.1

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Reverse (-)

23845 .. 24871

Gene Structure 1027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002126.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

atggagcctcgtgttgggaacaagttcaggctgggacggaagatcggtagcggctcgttcggggagatctatcttggtaccaatattcagacgaacgaggaggttgcgattaagctggaaaatgtgaagacaaaacatcctcagttgctgtatgaatccaagttgtacaggatcctacaaggaggaactgggataccaaatgtgcggtggtttggagttgaaggagattataacgttttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

80

Amino Acids

9.04

Weight (kDa)

9.4

Isoelectric Point (pI)

26.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	231
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	2 cut(s)	51, 205
AclI	AACGTT	1 cut(s)	234
AclWI	GGATC	2 cut(s)	166, 179
AfaI	GTAC	2 cut(s)	79, 167
AfiI	CCNNNNNNNGG	1 cut(s)	14
AgsI	TTSAA	1 cut(s)	221
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
AlwI	GGATC	2 cut(s)	166, 179
AlwNI	CAGNNNCTG	1 cut(s)	148
Asp700I	GAANNNNTTC	1 cut(s)	23
Asp718I	GGTACC	1 cut(s)	77
BamHI	GGATCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	134
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciVI	GTATCC	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	186
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	1 cut(s)	52
BlsI	GCNGC	1 cut(s)	53
BmiI	GGNNCC	3 cut(s)	6, 79, 173
BmrI	ACTGGG	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	193
BseGI	GGATG	1 cut(s)	136
BseLI	CCNNNNNNNGG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	193
BseRI	GAGGAG	1 cut(s)	113
BseYI	CCCAGC	1 cut(s)	31
BshNI	GGYRCC	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	48
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	3 cut(s)	42, 66, 171
BspACI	CCGC	2 cut(s)	51, 205
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	3 cut(s)	6, 79, 173
BspPI	GGATC	2 cut(s)	166, 179
BspT107I	GGYRCC	1 cut(s)	77
BsrGI	TGTACA	1 cut(s)	165
BsrI	ACTGG	1 cut(s)	193
BssMI	GATC	3 cut(s)	42, 66, 171
BssSI	CACGAG	1 cut(s)	9
Bst2BI	CACGAG	1 cut(s)	9
BstAUI	TGTACA	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	3 cut(s)	45, 69, 174
BstMBI	GATC	3 cut(s)	42, 66, 171
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	2 cut(s)	66, 171
BstYI	RGATCY	2 cut(s)	66, 171
BsuI	GTATCC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	78, 166
CviJI	RGCY	4 cut(s)	7, 31, 54, 115
CviKI_1	RGCY	4 cut(s)	7, 31, 54, 115
CviQI	GTAC	2 cut(s)	78, 166
DdeI	CTNAG	1 cut(s)	141
DpnI	GATC	3 cut(s)	44, 68, 173
DpnII	GATC	3 cut(s)	42, 66, 171
FaiI	YATR	2 cut(s)	153, 231
FaqI	GGGAC	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	52
FokI	GGATG	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	52
GluI	GCNGC	1 cut(s)	52
GsaI	CCCAGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	155
Hpy188I	TCNGA	1 cut(s)	90
HpyAV	CCTTC	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	141
HpySE526I	ACGT	1 cut(s)	234
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	3 cut(s)	42, 66, 171
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	13, 17, 101, 154, 174
MaeII	ACGT	1 cut(s)	234
MalI	GATC	3 cut(s)	44, 68, 173
MboI	GATC	3 cut(s)	42, 66, 171
MboII	GAAGA	2 cut(s)	52, 139
MflI	RGATCY	2 cut(s)	66, 171
MnlI	CCTC	5 cut(s)	18, 91, 94, 150, 176
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	1 cut(s)	111
NdeII	GATC	3 cut(s)	42, 66, 171
NlaIV	GGNNCC	3 cut(s)	6, 79, 173
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	53
PsiI	TTATAA	1 cut(s)	231
Psp1406I	AACGTT	1 cut(s)	234
PspFI	CCCAGC	1 cut(s)	31
PspN4I	GGNNCC	3 cut(s)	6, 79, 173
PstNI	CAGNNNCTG	1 cut(s)	148
PsuI	RGATCY	2 cut(s)	66, 171
RsaI	GTAC	2 cut(s)	79, 167
RsaNI	GTAC	2 cut(s)	78, 166
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	1 cut(s)	52
Sau3AI	GATC	3 cut(s)	42, 66, 171
SetI	ASST	3 cut(s)	105, 117, 237
SsiI	CCGC	2 cut(s)	51, 205
SspI	AATATT	1 cut(s)	85
TaiI	ACGT	1 cut(s)	237
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	155
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.