Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8410961.1

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1331

Gene Structure 1330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8410961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 637 bp

atgctatttgctcgtagtcttccttggcagggactaaaagcgggaactaagaaacagaaatatgaaaaaattagtgagaaaaaggtttctacttcaattgaggccttgtgtcgtggttatccaacagagtttgcatcatatttccattactgtcgctcactacgattcgatgataagccagactatgtttatctgaaaaagatattccgtgatgtcttcattcgtgaaggtttccagtttgattatgtttttgactggacaattttgaagtatcagcaatcacagctggctacacctcccacccgtgcccttggtgctggaactagttctggaatgccgcatgctcctgccattgtggacaggcagactggtgaggaagatgggcggatagccggtttatcctcactggatgcctctcggcggagaataccgggaccagctctgaattctgcgagtgtgtcaaggcagagaaattcaagtgctatggattctgcgataactagagagaataatctgttatcaaatcccaatatgttgggccgatctagtggatcatcaaggagacctgctgtttccagcagtcgtgagggatttgtaaggagcgagtctgaacaccgtgttcgcacaaccgatgcta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

212

Amino Acids

23.79

Weight (kDa)

9.87

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
AciI	CCGC	4 cut(s)	41, 338, 385, 421
AclWI	GGATC	1 cut(s)	559
AcsI	RAATTY	2 cut(s)	445, 472
AfiI	CCNNNNNNNGG	2 cut(s)	29, 420
AgsI	TTSAA	3 cut(s)	96, 268, 477
AhlI	ACTAGT	1 cut(s)	323
AluBI	AGCT	2 cut(s)	286, 440
AluI	AGCT	2 cut(s)	286, 440
Alw26I	GTCTC	1 cut(s)	556
AlwI	GGATC	1 cut(s)	559
AoxI	GGCC	2 cut(s)	102, 538
ApoI	RAATTY	2 cut(s)	445, 472
Asp700I	GAANNNNTTC	1 cut(s)	325
AspS9I	GGNCC	2 cut(s)	434, 538
AsuC2I	CCSGG	1 cut(s)	432
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	434
BaeGI	GKGCMC	1 cut(s)	310
BbsI	GAAGAC	2 cut(s)	11, 208
BccI	CCATC	1 cut(s)	374
BcnI	CCSGG	1 cut(s)	432
BcoDI	GTCTC	1 cut(s)	556
BcuI	ACTAGT	1 cut(s)	323
BfaI	CTAG	3 cut(s)	324, 501, 546
BfuAI	ACCTGC	1 cut(s)	574
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	434, 538
BmiI	GGNNCC	1 cut(s)	435
BmrFI	CCNGG	1 cut(s)	432
BmsI	GCATC	3 cut(s)	143, 400, 622
BpiI	GAAGAC	2 cut(s)	11, 208
BpuMI	CCSGG	1 cut(s)	432
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	23, 310
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 420
Bse118I	RCCGGY	1 cut(s)	392
Bse1I	ACTGG	4 cut(s)	235, 260, 373, 411
BseDI	CCNNGG	2 cut(s)	23, 310
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	2 cut(s)	29, 420
BseNI	ACTGG	4 cut(s)	235, 260, 373, 411
BseSI	GKGCMC	1 cut(s)	310
BshFI	GGCC	2 cut(s)	104, 540
BsiSI	CCGG	2 cut(s)	393, 431
BslFI	GGGAC	2 cut(s)	45, 447
BslI	CCNNNNNNNGG	2 cut(s)	29, 420
BsmAI	GTCTC	1 cut(s)	556
BsmFI	GGGAC	2 cut(s)	45, 447
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	2 cut(s)	104, 540
Bso31I	GGTCTC	1 cut(s)	556
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp143I	GATC	2 cut(s)	542, 551
BspACI	CCGC	4 cut(s)	41, 338, 385, 421
BspANI	GGCC	2 cut(s)	104, 540
BspLI	GGNNCC	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	559
BspTNI	GGTCTC	1 cut(s)	556
BsrFI	RCCGGY	1 cut(s)	392
BsrI	ACTGG	4 cut(s)	235, 260, 373, 411
BssAI	RCCGGY	1 cut(s)	392
BssECI	CCNNGG	2 cut(s)	23, 310
BssMI	GATC	2 cut(s)	542, 551
BssT1I	CCWWGG	2 cut(s)	23, 310
Bst4CI	ACNGT	2 cut(s)	152, 617
BstC8I	GCNNGC	2 cut(s)	288, 342
BstDEI	CTNAG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	2 cut(s)	545, 554
BstMAI	GTCTC	1 cut(s)	556
BstMBI	GATC	2 cut(s)	542, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	283, 314
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	430
BstSLI	GKGCMC	1 cut(s)	310
BstV2I	GAAGAC	2 cut(s)	11, 208
BstXI	CCANNNNNNTGG	1 cut(s)	535
BsuRI	GGCC	2 cut(s)	104, 540
BtsCI	GGATG	1 cut(s)	415
BtsIMutI	CAGTG	1 cut(s)	404
BveI	ACCTGC	1 cut(s)	574
Cac8I	GCNNGC	2 cut(s)	288, 342
Cfr10I	RCCGGY	1 cut(s)	392
Cfr13I	GGNCC	2 cut(s)	434, 538
CviAII	CATG	1 cut(s)	341
CviJI	RGCY	7 cut(s)	104, 178, 286, 290, 392, 440, 540
CviKI_1	RGCY	7 cut(s)	104, 178, 286, 290, 392, 440, 540
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	2 cut(s)	544, 553
DpnII	GATC	2 cut(s)	542, 551
EciI	GGCGGA	2 cut(s)	400, 436
Eco130I	CCWWGG	2 cut(s)	23, 310
Eco147I	AGGCCT	1 cut(s)	104
Eco31I	GGTCTC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	434
EcoRI	GAATTC	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	23, 310
ErhI	CCWWGG	2 cut(s)	23, 310
FaeI	CATG	1 cut(s)	344
FaiI	YATR	7 cut(s)	63, 139, 186, 246, 342, 485, 533
FaqI	GGGAC	2 cut(s)	45, 447
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	1 cut(s)	338
FspBI	CTAG	3 cut(s)	324, 501, 546
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	2 cut(s)	104, 540
HapII	CCGG	2 cut(s)	393, 431
Hin1II	CATG	1 cut(s)	344
HinfI	GANTC	3 cut(s)	165, 488, 605
HpaII	CCGG	2 cut(s)	393, 431
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	1 cut(s)	358
Hpy188I	TCNGA	3 cut(s)	195, 444, 610
Hpy188III	TCNNGA	3 cut(s)	224, 330, 584
Hpy8I	GTNNAC	1 cut(s)	358
HpyAV	CCTTC	1 cut(s)	221
HpyCH4III	ACNGT	2 cut(s)	152, 617
HpyCH4V	TGCA	1 cut(s)	134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	283, 314
HpyF3I	CTNAG	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	542, 551
LmnI	GCTCC	2 cut(s)	349, 600
LweI	GCATC	3 cut(s)	143, 400, 622
MaeI	CTAG	3 cut(s)	324, 501, 546
MalI	GATC	2 cut(s)	544, 553
MboI	GATC	2 cut(s)	542, 551
MboII	GAAGA	3 cut(s)	11, 208, 389
MfeI	CAATTG	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	310
MluCI	AATT	5 cut(s)	69, 96, 261, 445, 472
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	6 cut(s)	94, 306, 367, 412, 424, 580
MroXI	GAANNNNTTC	1 cut(s)	325
MspA1I	CMGCKG	1 cut(s)	286
MspI	CCGG	2 cut(s)	393, 431
MspR9I	CCNGG	1 cut(s)	432
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	283, 314
NciI	CCSGG	1 cut(s)	432
NdeII	GATC	2 cut(s)	542, 551
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	1 cut(s)	435
NmeAIII	GCCGAG	1 cut(s)	397
NspI	RCATGY	1 cut(s)	344
PaeI	GCATGC	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	1 cut(s)	160
PctI	GAATGC	1 cut(s)	339
PdmI	GAANNNNTTC	1 cut(s)	325
PfeI	GAWTC	2 cut(s)	165, 488
PkrI	GCNGC	1 cut(s)	339
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	2 cut(s)	434, 538
PvuII	CAGCTG	1 cut(s)	286
SatI	GCNGC	1 cut(s)	338
Sau3AI	GATC	2 cut(s)	542, 551
Sau96I	GGNCC	2 cut(s)	434, 538
SchI	GAGTC	1 cut(s)	614
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	1 cut(s)	310
SetI	ASST	6 cut(s)	87, 232, 288, 298, 442, 568
SfaNI	GCATC	3 cut(s)	143, 400, 622
SinI	GGWCC	1 cut(s)	434
SpeI	ACTAGT	1 cut(s)	323
SphI	GCATGC	1 cut(s)	344
Sse9I	AATT	5 cut(s)	69, 96, 261, 445, 472
SseBI	AGGCCT	1 cut(s)	104
SsiI	CCGC	4 cut(s)	41, 338, 385, 421
SspMI	CTAG	3 cut(s)	324, 501, 546
StuI	AGGCCT	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	2 cut(s)	23, 310
TaaI	ACNGT	2 cut(s)	152, 617
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	69, 96, 261, 445, 472
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	2 cut(s)	165, 488
TscAI	CASTG	1 cut(s)	411
TspDTI	ATGAA	2 cut(s)	78, 208
TspGWI	ACGGA	1 cut(s)	197
TspRI	CASTG	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	434
XapI	RAATTY	2 cut(s)	445, 472
XceI	RCATGY	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	325
XspI	CTAG	3 cut(s)	324, 501, 546

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.