Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Reverse (-)

65909924 .. 65912136

Gene Structure 2213 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG455700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATTTATTGGGACCTAGTCTTGAGGATTTATTCAACTTTTGCAGTAGGAAGTTGTCTCTTAAGACTGTTCTCATGCTTGCAGATCAAATGATAAATCGAGTGGAGTTTGTTCATTCCAAGTCTTTTCTACATCGGGATATCAAACCAGACAAGTTCCTAATGGGATTGGGTCGTCGGGCAAATCAGATTTACATCATTGACTTCGACCTCGCTAAGAAGTATAGAGACACATCAACCCATCAGCATATTCCTTATAGAGATAATAAGAATTTGACTGGGAGAGCAAGATATGCAAGCATGAATACTCATCTTGACATTGAACAAAGCCGAAGGGATGATCTCGAGTCACTTGGATATGTGCTTATGTACTTCCTAAGAGGAAGTCTTCCATGGCAGGGATTGAAGGCTGGAACTAAAAAGCAGAAGTATGAGAAGATCAGTGAAAAGAAAGTGTCAACATCAATTGAGGCCTTATGCCGTGGTTATCCCACCGAATTTGCCTCATACTTCCATTACTGTAGATCTGTACGTTTTGATGATAAACCAGATTATGCTTATCTGAAGAGATTGTTTCGTGACCTTTTTATTCGCGAAGGTTTTCAGTTTGATTATGTCTTTGATTGGACGATCTTGAAATATCAGCAGTCGCAGATTGCCACACCTCCTACTCGTGCACCTGAAAGTGACACAGATATTACTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

235

Amino Acids

27.76

Weight (kDa)

9.18

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	7 - 187	9.1e-07	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	10 - 146	4.6e-13	Protein kinase domain
Pkinase_fungal	PF17667	29 - 125	5.6e-07	Fungal protein kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	594
AcsI	RAATTY	2 cut(s)	271, 497
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	371, 531
AfiI	CCNNNNNNNGG	1 cut(s)	398
AflII	CTTAAG	1 cut(s)	62
AgsI	TTSAA	4 cut(s)	37, 323, 406, 637
Alw21I	GWGCWC	1 cut(s)	679
Alw26I	GTCTC	2 cut(s)	63, 222
Alw44I	GTGCAC	1 cut(s)	675
Ama87I	CYCGRG	1 cut(s)	344
AoxI	GGCC	1 cut(s)	471
ApaLI	GTGCAC	1 cut(s)	675
ApoI	RAATTY	2 cut(s)	271, 497
Asp700I	GAANNNNTTC	1 cut(s)	600
AspS9I	GGNCC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	344
AvaII	GGWCC	1 cut(s)	14
BaeGI	GKGCMC	1 cut(s)	679
BauI	CACGAG	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	380
Bbv12I	GWGCWC	1 cut(s)	679
BccI	CCATC	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	465
BcoDI	GTCTC	2 cut(s)	63, 222
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	520
BfrI	CTTAAG	1 cut(s)	62
BglII	AGATCT	1 cut(s)	524
Bme18I	GGWCC	1 cut(s)	14
BmeT110I	CYCGRG	1 cut(s)	344
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	1 cut(s)	380
BpuEI	CTTGAG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	392, 481
Bsc4I	CCNNNNNNNGG	1 cut(s)	398
Bse1I	ACTGG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	392, 481
BseGI	GGATG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	398
BseNI	ACTGG	1 cut(s)	283
BseSI	GKGCMC	1 cut(s)	679
Bsh1236I	CGCG	1 cut(s)	594
BshFI	GGCC	1 cut(s)	473
BsiHKAI	GWGCWC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	398
BsmAI	GTCTC	2 cut(s)	63, 222
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	344
Bsp1286I	GDGCHC	1 cut(s)	679
Bsp143I	GATC	5 cut(s)	85, 340, 438, 524, 630
Bsp19I	CCATGG	1 cut(s)	392
Bsp68I	TCGCGA	1 cut(s)	594
BspANI	GGCC	1 cut(s)	473
BspFNI	CGCG	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	15
BspTI	CTTAAG	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	2 cut(s)	392, 481
BssMI	GATC	5 cut(s)	85, 340, 438, 524, 630
BssSI	CACGAG	1 cut(s)	672
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	672
Bst4CI	ACNGT	2 cut(s)	70, 521
Bst6I	CTCTTC	1 cut(s)	560
BstAFI	CTTAAG	1 cut(s)	62
BstAPI	GCANNNNNTGC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	81, 298
BstDEI	CTNAG	2 cut(s)	216, 377
BstDSI	CCRYGG	2 cut(s)	392, 481
BstF5I	GGATG	1 cut(s)	343
BstFNI	CGCG	1 cut(s)	594
BstKTI	GATC	5 cut(s)	88, 343, 441, 527, 633
BstMAI	GTCTC	2 cut(s)	63, 222
BstMBI	GATC	5 cut(s)	85, 340, 438, 524, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSFI	CTRYAG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	679
BstUI	CGCG	1 cut(s)	594
BstV2I	GAAGAC	1 cut(s)	380
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuRI	GGCC	1 cut(s)	473
BtgI	CCRYGG	2 cut(s)	392, 481
BtsCI	GGATG	1 cut(s)	343
BtsIMutI	CAGTG	1 cut(s)	448
BtuMI	TCGCGA	1 cut(s)	594
Cac8I	GCNNGC	2 cut(s)	81, 298
Cfr13I	GGNCC	1 cut(s)	14
Csp6I	GTAC	2 cut(s)	370, 530
CspCI	CAANNNNNGTGG	2 cut(s)	481, 516
CviAII	CATG	3 cut(s)	76, 301, 393
CviJI	RGCY	3 cut(s)	330, 410, 473
CviKI_1	RGCY	3 cut(s)	330, 410, 473
CviQI	GTAC	2 cut(s)	370, 530
DdeI	CTNAG	2 cut(s)	216, 377
DpnI	GATC	5 cut(s)	87, 342, 440, 526, 632
DpnII	GATC	5 cut(s)	85, 340, 438, 524, 630
Eam1104I	CTCTTC	1 cut(s)	560
EarI	CTCTTC	1 cut(s)	560
Eco130I	CCWWGG	1 cut(s)	392
Eco147I	AGGCCT	1 cut(s)	473
Eco32I	GATATC	1 cut(s)	142
Eco47I	GGWCC	1 cut(s)	14
Eco57I	CTGAAG	1 cut(s)	584
Eco88I	CYCGRG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRV	GATATC	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	3 cut(s)	79, 304, 396
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	3 cut(s)	75, 300, 392
FokI	GGATG	1 cut(s)	350
FspBI	CTAG	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	473
Hin1II	CATG	3 cut(s)	79, 304, 396
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HinfI	GANTC	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	459, 677
Hpy188I	TCNGA	2 cut(s)	189, 564
Hpy188III	TCNNGA	7 cut(s)	23, 137, 314, 344, 578, 593, 634
Hpy8I	GTNNAC	2 cut(s)	459, 677
Hpy99I	CGWCG	1 cut(s)	180
HpyAV	CCTTC	3 cut(s)	327, 400, 590
HpyCH4III	ACNGT	2 cut(s)	70, 521
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	4 cut(s)	45, 83, 296, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	2 cut(s)	216, 377
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	3 cut(s)	79, 304, 396
Kzo9I	GATC	5 cut(s)	85, 340, 438, 524, 630
LpnPI	CCDG	6 cut(s)	162, 264, 383, 396, 561, 693
MaeI	CTAG	1 cut(s)	18
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	3 cut(s)	348, 578, 686
MalI	GATC	5 cut(s)	87, 342, 440, 526, 632
MboI	GATC	5 cut(s)	85, 340, 438, 524, 630
MboII	GAAGA	3 cut(s)	380, 448, 577
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	679
MluCI	AATT	3 cut(s)	271, 465, 497
MlyI	GAGTC	1 cut(s)	356
MnlI	CCTC	6 cut(s)	19, 221, 374, 463, 514, 675
MroXI	GAANNNNTTC	1 cut(s)	600
MseI	TTAA	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	594
MwoI	GCNNNNNNNGC	1 cut(s)	293
NcoI	CCATGG	1 cut(s)	392
NdeII	GATC	5 cut(s)	85, 340, 438, 524, 630
NlaIII	CATG	3 cut(s)	79, 304, 396
NlaIV	GGNNCC	1 cut(s)	15
NmuCI	GTSAC	3 cut(s)	348, 578, 686
NruI	TCGCGA	1 cut(s)	594
PaeR7I	CTCGAG	1 cut(s)	344
PceI	AGGCCT	1 cut(s)	473
PdmI	GAANNNNTTC	1 cut(s)	600
PflFI	GACNNNGTC	1 cut(s)	18
PleI	GAGTC	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	14
Psp5II	RGGWCCY	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	15
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
PsuI	RGATCY	1 cut(s)	524
PsyI	GACNNNGTC	1 cut(s)	18
RruI	TCGCGA	1 cut(s)	594
RsaI	GTAC	2 cut(s)	371, 531
RsaNI	GTAC	2 cut(s)	370, 530
SaqAI	TTAA	1 cut(s)	63
Sau3AI	GATC	5 cut(s)	85, 340, 438, 524, 630
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	679
SetI	ASST	7 cut(s)	19, 213, 535, 585, 601, 667, 682
SfcI	CTRYAG	1 cut(s)	520
Sfr274I	CTCGAG	1 cut(s)	344
SinI	GGWCC	1 cut(s)	14
SlaI	CTCGAG	1 cut(s)	344
SmlI	CTYRAG	3 cut(s)	23, 62, 344
SmoI	CTYRAG	3 cut(s)	23, 62, 344
Sse9I	AATT	3 cut(s)	271, 465, 497
SseBI	AGGCCT	1 cut(s)	473
SspMI	CTAG	1 cut(s)	18
StuI	AGGCCT	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	2 cut(s)	70, 521
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	3 cut(s)	100, 207, 345
TasI	AATT	3 cut(s)	271, 465, 497
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	448
TseFI	GTSAC	3 cut(s)	348, 578, 686
Tsp45I	GTSAC	3 cut(s)	348, 578, 686
TspDTI	ATGAA	2 cut(s)	104, 317
TspRI	CASTG	1 cut(s)	448
Tth111I	GACNNNGTC	1 cut(s)	18
Vha464I	CTTAAG	1 cut(s)	62
VneI	GTGCAC	1 cut(s)	675
VpaK11BI	GGWCC	1 cut(s)	14
XapI	RAATTY	2 cut(s)	271, 497
XhoI	CTCGAG	1 cut(s)	344
XmnI	GAANNNNTTC	1 cut(s)	600
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.