Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Forward (+)

7229072 .. 7232443

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG086000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGCCTCGTGTTGGGAATAAGTTCAGGCTGGGACGGAAGATCGGTAGCGGCTCGTTCGGGGAGATCTATCTTGGTACCAATATTCAGACGAACGAGGAGGTTGCGATTAAGCTGGAAAATGTGAAGACAAAACATCCTCAGTTGCTAGAAAACAAGAATCTGACTGGAACAGCAAGATATGCAAGCATGAACACCCACCTTGGGATTGAGCAAAGCCGGAGGGATGATTTGGAATCTCTTGGTTACGTCCTGATGTACTTCCTTAAGGGAAGTCTTCCTTGGCAGGGACTAAAAGCGGGAACTAAGAAACAGAAATATGAAAAAATTAGTGAGAAAAAGGTTTCTACTTCAATTGAGGCCTTGTGTCGTGGTTATCCAACAGAGTTTGCATCATATTTCCATTACTGTCGCTCACTACGATTCGATGATAAGCCAGACTATGTTTATCTGAAAAAGATATTCCGTGATGTCTTCATTCGTGAAGGTTTCCAGTTTGATTATGTTTTTGACTGGACAATTTTGAAGTATCAGCAATCACAGCTGGCTACACCTCCCACCCGTGCCCTTGGTGCTGGAACTAGTTCTGGAATGCCGCATGCTCCTGCCATTGTGGACAGGCAGACTGGTGAGGAAGATGGGCGGATAGCCGGTTTATCCTCACTGGATGCCTCTCGGCGGAGAATACCGGGACCAGCTCTGAATTCTGCGAGTGTGTCGAGGCAGAGAAATTCAAGTGCTATGGATTCTGCGATAACTAGAGAGAATAATCTGTTATCAAATCCCAATATGTTGGGCCGATCTAGTGGATCATCAAGGAGACCTGCTGTTTCCAGCAGTCGTGAGGGATTTGTAAGGAGCGAGTCTGAACACCGTGTTCGCACAACCGATGCTAGTCCTGGAACAGGCCACAGAATTTCGAGTGGCCAAAGAAGTTCACCGGTCGAGTCATCAGACCCTACTCGTACCGGAAGACATAGCTCACAAATTAGAAACTATGAAACTGCCATTAGAGGCCTTGAAGGCCTGCAGTTAGACCATGAGGAGAGGATCCATTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

353

Amino Acids

39.56

Weight (kDa)

9.67

Isoelectric Point (pI)

55.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	832
Acc65I	GGTACC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	77
AciI	CCGC	5 cut(s)	51, 299, 596, 643, 679
AclWI	GGATC	3 cut(s)	817, 1045, 1058
AcoI	YGGCCR	1 cut(s)	925
AcsI	RAATTY	3 cut(s)	703, 730, 915
AfaI	GTAC	3 cut(s)	79, 260, 967
AfiI	CCNNNNNNNGG	5 cut(s)	14, 204, 287, 678, 905
AflII	CTTAAG	1 cut(s)	266
AgeI	ACCGGT	1 cut(s)	940
AgsI	TTSAA	4 cut(s)	354, 526, 735, 1022
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	1 cut(s)	898
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	4 cut(s)	115, 544, 698, 981
AluI	AGCT	4 cut(s)	115, 544, 698, 981
Alw26I	GTCTC	1 cut(s)	814
AlwI	GGATC	3 cut(s)	817, 1045, 1058
AoxI	GGCC	6 cut(s)	360, 796, 907, 925, 1015, 1024
ApoI	RAATTY	3 cut(s)	703, 730, 915
AsiGI	ACCGGT	1 cut(s)	940
Asp700I	GAANNNNTTC	2 cut(s)	23, 583
Asp718I	GGTACC	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	692, 796
AsuC2I	CCSGG	1 cut(s)	690
AsuHPI	GGTGA	2 cut(s)	641, 930
AvaII	GGWCC	1 cut(s)	692
BaeGI	GKGCMC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	927
BamHI	GGATCC	1 cut(s)	1050
BanI	GGYRCC	1 cut(s)	77
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	4 cut(s)	134, 269, 466, 979
BccI	CCATC	1 cut(s)	632
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BciT130I	CCWGG	1 cut(s)	900
BcnI	CCSGG	1 cut(s)	690
BcoDI	GTCTC	1 cut(s)	814
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	6 cut(s)	149, 582, 759, 804, 894, 1060
BfmI	CTRYAG	1 cut(s)	1028
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	832
BglI	GCCNNNNNGGC	1 cut(s)	1023
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	2 cut(s)	52, 596
BlsI	GCNGC	2 cut(s)	53, 597
Bme1390I	CCNGG	2 cut(s)	690, 900
Bme18I	GGWCC	1 cut(s)	692
BmgT120I	GGNCC	2 cut(s)	692, 796
BmiI	GGNNCC	4 cut(s)	6, 79, 693, 1052
BmrFI	CCNGG	2 cut(s)	690, 900
BmsI	GCATC	3 cut(s)	401, 658, 880
BpiI	GAAGAC	4 cut(s)	134, 269, 466, 979
BpuMI	CCSGG	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	814
BsaJI	CCNNGG	3 cut(s)	202, 281, 568
BsaWI	WCCGGW	2 cut(s)	940, 968
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 204, 287, 678, 905
Bse118I	RCCGGY	2 cut(s)	650, 940
Bse1I	ACTGG	5 cut(s)	172, 493, 518, 631, 669
BseBI	CCWGG	1 cut(s)	900
BseDI	CCNNGG	3 cut(s)	202, 281, 568
BseGI	GGATG	3 cut(s)	136, 232, 673
BseLI	CCNNNNNNNGG	5 cut(s)	14, 204, 287, 678, 905
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	5 cut(s)	172, 493, 518, 631, 669
BseRI	GAGGAG	2 cut(s)	113, 1058
BseSI	GKGCMC	1 cut(s)	568
BseYI	CCCAGC	1 cut(s)	31
Bsh1285I	CGRYCG	1 cut(s)	945
BshFI	GGCC	6 cut(s)	362, 798, 909, 927, 1017, 1026
BshNI	GGYRCC	1 cut(s)	77
BshTI	ACCGGT	1 cut(s)	940
BsiEI	CGRYCG	1 cut(s)	945
BsiSI	CCGG	5 cut(s)	220, 651, 689, 941, 969
BslFI	GGGAC	3 cut(s)	48, 303, 705
BslI	CCNNNNNNNGG	5 cut(s)	14, 204, 287, 678, 905
BsmAI	GTCTC	1 cut(s)	814
BsmFI	GGGAC	3 cut(s)	48, 303, 705
BsmI	GAATGC	1 cut(s)	597
BsnI	GGCC	6 cut(s)	362, 798, 909, 927, 1017, 1026
Bso31I	GGTCTC	1 cut(s)	814
Bsp1286I	GDGCHC	1 cut(s)	568
Bsp143I	GATC	5 cut(s)	42, 66, 800, 809, 1050
BspACI	CCGC	5 cut(s)	51, 299, 596, 643, 679
BspANI	GGCC	6 cut(s)	362, 798, 909, 927, 1017, 1026
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	4 cut(s)	6, 79, 693, 1052
BspMAI	CTGCAG	1 cut(s)	1032
BspMI	ACCTGC	1 cut(s)	832
BspPI	GGATC	3 cut(s)	817, 1045, 1058
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	814
BsrFI	RCCGGY	2 cut(s)	650, 940
BsrI	ACTGG	5 cut(s)	172, 493, 518, 631, 669
BssAI	RCCGGY	2 cut(s)	650, 940
BssECI	CCNNGG	3 cut(s)	202, 281, 568
BssMI	GATC	5 cut(s)	42, 66, 800, 809, 1050
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	3 cut(s)	202, 281, 568
Bst2BI	CACGAG	1 cut(s)	9
Bst2UI	CCWGG	1 cut(s)	900
Bst4CI	ACNGT	2 cut(s)	410, 875
BstAFI	CTTAAG	1 cut(s)	266
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstC8I	GCNNGC	4 cut(s)	187, 546, 600, 1028
BstDEI	CTNAG	2 cut(s)	141, 306
BstENI	CCTNNNNNAGG	1 cut(s)	903
BstF5I	GGATG	3 cut(s)	136, 232, 673
BstKTI	GATC	5 cut(s)	45, 69, 803, 812, 1053
BstMAI	GTCTC	1 cut(s)	814
BstMBI	GATC	5 cut(s)	42, 66, 800, 809, 1050
BstMCI	CGRYCG	1 cut(s)	945
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 541, 572, 1023
BstNI	CCWGG	1 cut(s)	900
BstNSI	RCATGY	1 cut(s)	602
BstSCI	CCNGG	2 cut(s)	688, 898
BstSFI	CTRYAG	1 cut(s)	1028
BstSLI	GKGCMC	1 cut(s)	568
BstV2I	GAAGAC	4 cut(s)	134, 269, 466, 979
BstX2I	RGATCY	2 cut(s)	66, 1050
BstXI	CCANNNNNNTGG	1 cut(s)	793
BstYI	RGATCY	2 cut(s)	66, 1050
BsuRI	GGCC	6 cut(s)	362, 798, 909, 927, 1017, 1026
BtsCI	GGATG	3 cut(s)	136, 232, 673
BtsIMutI	CAGTG	1 cut(s)	662
BveI	ACCTGC	1 cut(s)	832
Cac8I	GCNNGC	4 cut(s)	187, 546, 600, 1028
Cfr10I	RCCGGY	2 cut(s)	650, 940
Cfr13I	GGNCC	2 cut(s)	692, 796
Csp6I	GTAC	3 cut(s)	78, 259, 966
CspAI	ACCGGT	1 cut(s)	940
CviAII	CATG	3 cut(s)	190, 599, 1040
CviQI	GTAC	3 cut(s)	78, 259, 966
DdeI	CTNAG	2 cut(s)	141, 306
DpnI	GATC	5 cut(s)	44, 68, 802, 811, 1052
DpnII	GATC	5 cut(s)	42, 66, 800, 809, 1050
EaeI	YGGCCR	1 cut(s)	925
EciI	GGCGGA	2 cut(s)	658, 694
Eco130I	CCWWGG	3 cut(s)	202, 281, 568
Eco147I	AGGCCT	3 cut(s)	362, 1017, 1026
Eco31I	GGTCTC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	692
EcoNI	CCTNNNNNAGG	1 cut(s)	903
EcoRI	GAATTC	1 cut(s)	703
EcoRII	CCWGG	1 cut(s)	898
EcoT14I	CCWWGG	3 cut(s)	202, 281, 568
ErhI	CCWWGG	3 cut(s)	202, 281, 568
FaeI	CATG	3 cut(s)	193, 602, 1043
FalI	AAGNNNNNCTT	2 cut(s)	265, 297
FaqI	GGGAC	3 cut(s)	48, 303, 705
FatI	CATG	3 cut(s)	189, 598, 1039
FauI	CCCGC	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	52, 596
FokI	GGATG	3 cut(s)	123, 239, 680
Fsp4HI	GCNGC	2 cut(s)	52, 596
FspBI	CTAG	6 cut(s)	149, 582, 759, 804, 894, 1060
GluI	GCNGC	2 cut(s)	52, 596
GsaI	CCCAGC	1 cut(s)	35
HaeIII	GGCC	6 cut(s)	362, 798, 909, 927, 1017, 1026
HapII	CCGG	5 cut(s)	220, 651, 689, 941, 969
Hin1II	CATG	3 cut(s)	193, 602, 1043
HinfI	GANTC	6 cut(s)	160, 236, 423, 746, 863, 947
HpaII	CCGG	5 cut(s)	220, 651, 689, 941, 969
HphI	GGTGA	2 cut(s)	641, 930
Hpy166II	GTNNAC	2 cut(s)	616, 938
Hpy188I	TCNGA	6 cut(s)	90, 165, 453, 702, 868, 955
Hpy188III	TCNNGA	4 cut(s)	253, 482, 588, 842
Hpy8I	GTNNAC	2 cut(s)	616, 938
HpyAV	CCTTC	2 cut(s)	479, 1016
HpyCH4III	ACNGT	2 cut(s)	410, 875
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	185, 392, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 541, 572, 1023
HpyF3I	CTNAG	2 cut(s)	141, 306
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	3 cut(s)	193, 602, 1043
KpnI	GGTACC	1 cut(s)	81
Kzo9I	GATC	5 cut(s)	42, 66, 800, 809, 1050
LmnI	GCTCC	3 cut(s)	4, 607, 858
LweI	GCATC	3 cut(s)	401, 658, 880
MaeI	CTAG	6 cut(s)	149, 582, 759, 804, 894, 1060
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	5 cut(s)	44, 68, 802, 811, 1052
MboI	GATC	5 cut(s)	42, 66, 800, 809, 1050
MboII	GAAGA	6 cut(s)	52, 139, 269, 466, 647, 984
MfeI	CAATTG	1 cut(s)	354
MflI	RGATCY	2 cut(s)	66, 1050
MhlI	GDGCHC	1 cut(s)	568
MlsI	TGGCCA	1 cut(s)	927
MluCI	AATT	7 cut(s)	327, 354, 519, 703, 730, 915, 987
MluNI	TGGCCA	1 cut(s)	927
MlyI	GAGTC	2 cut(s)	872, 956
MmeI	TCCRAC	1 cut(s)	404
Mox20I	TGGCCA	1 cut(s)	927
MroXI	GAANNNNTTC	2 cut(s)	23, 583
MscI	TGGCCA	1 cut(s)	927
MseI	TTAA	2 cut(s)	111, 267
Msp20I	TGGCCA	1 cut(s)	927
MspA1I	CMGCKG	1 cut(s)	544
MspCI	CTTAAG	1 cut(s)	266
MspI	CCGG	5 cut(s)	220, 651, 689, 941, 969
MspR9I	CCNGG	2 cut(s)	690, 900
MunI	CAATTG	1 cut(s)	354
Mva1269I	GAATGC	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	900
MwoI	GCNNNNNNNGC	4 cut(s)	182, 541, 572, 1023
NciI	CCSGG	1 cut(s)	690
NdeII	GATC	5 cut(s)	42, 66, 800, 809, 1050
NlaIII	CATG	3 cut(s)	193, 602, 1043
NlaIV	GGNNCC	4 cut(s)	6, 79, 693, 1052
NmeAIII	GCCGAG	1 cut(s)	655
NspI	RCATGY	1 cut(s)	602
PaeI	GCATGC	1 cut(s)	602
PceI	AGGCCT	3 cut(s)	362, 1017, 1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PctI	GAATGC	1 cut(s)	597
PdmI	GAANNNNTTC	2 cut(s)	23, 583
PfeI	GAWTC	4 cut(s)	160, 236, 423, 746
PfoI	TCCNGGA	1 cut(s)	898
PinAI	ACCGGT	1 cut(s)	940
PkrI	GCNGC	2 cut(s)	53, 597
PleI	GAGTC	2 cut(s)	871, 955
PpsI	GAGTC	2 cut(s)	871, 955
Psp6I	CCWGG	1 cut(s)	898
PspFI	CCCAGC	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	898
PspN4I	GGNNCC	4 cut(s)	6, 79, 693, 1052
PspPI	GGNCC	2 cut(s)	692, 796
PstI	CTGCAG	1 cut(s)	1032
PsuI	RGATCY	2 cut(s)	66, 1050
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	3 cut(s)	79, 260, 967
RsaNI	GTAC	3 cut(s)	78, 259, 966
SaqAI	TTAA	2 cut(s)	111, 267
SatI	GCNGC	2 cut(s)	52, 596
Sau3AI	GATC	5 cut(s)	42, 66, 800, 809, 1050
Sau96I	GGNCC	2 cut(s)	692, 796
SchI	GAGTC	2 cut(s)	872, 956
ScrFI	CCNGG	2 cut(s)	690, 900
SduI	GDGCHC	1 cut(s)	568
SfaNI	GCATC	3 cut(s)	401, 658, 880
SfcI	CTRYAG	1 cut(s)	1028
SfiI	GGCCNNNNNGGCC	1 cut(s)	1023
SinI	GGWCC	1 cut(s)	692
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SpeI	ACTAGT	1 cut(s)	581
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	7 cut(s)	327, 354, 519, 703, 730, 915, 987
SseBI	AGGCCT	3 cut(s)	362, 1017, 1026
SsiI	CCGC	5 cut(s)	51, 299, 596, 643, 679
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	6 cut(s)	149, 582, 759, 804, 894, 1060
StuI	AGGCCT	3 cut(s)	362, 1017, 1026
StyD4I	CCNGG	2 cut(s)	688, 898
StyI	CCWWGG	3 cut(s)	202, 281, 568
TaaI	ACNGT	2 cut(s)	410, 875
TaiI	ACGT	1 cut(s)	252
TaqI	TCGA	4 cut(s)	426, 719, 920, 945
TasI	AATT	7 cut(s)	327, 354, 519, 703, 730, 915, 987
TatI	WGTACW	1 cut(s)	258
TauI	GCSGC	2 cut(s)	54, 598
TfiI	GAWTC	4 cut(s)	160, 236, 423, 746
Tru1I	TTAA	2 cut(s)	111, 267
Tru9I	TTAA	2 cut(s)	111, 267
TscAI	CASTG	1 cut(s)	669
TspDTI	ATGAA	4 cut(s)	206, 336, 466, 1014
TspGWI	ACGGA	2 cut(s)	52, 455
TspRI	CASTG	1 cut(s)	669
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	692
XagI	CCTNNNNNAGG	1 cut(s)	903
XapI	RAATTY	3 cut(s)	703, 730, 915
XceI	RCATGY	1 cut(s)	602
XmnI	GAANNNNTTC	2 cut(s)	23, 583
XspI	CTAG	6 cut(s)	149, 582, 759, 804, 894, 1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.