Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0007577

Physical Location & Seq

Genomic Coordinates Forward (+)

42678840 .. 42681450

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034433

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACCGAGGAGGACGAGAAGGAGGAAGAGGACGACGATGACAATGAATATGGCCCCTATCATGGAGGCGCCGGCGGGAGTCGGACCAATATTCAGACTAACGAAGAGGTTGCGATTAAGCTGGTTTCCAATTTTGAGGAAAATGTGAAGACAAAACATCCTCAGTTGCTGTATGATTCCAAGTTGTATAGGATCTTACAAGGAGGAACTGGGATACCAAATGTGCGGTGGTTTGGAGTTGAAGGAGATTATAACGTTTTGGTAATGGATTTGCTAGGTCCTAGTCTTGAAGACTTATTTAACTTTTGCAGTAGGAAACTTTGTTTGGAGACACTTATGCGGATCAATTGTGTTGACTATGTTCATTCCAAATCCTTTCTACATCGTGATATCAAGCTAGACAATTTTCTCATGGGATTAGGATGGCATAATTTGATTGGAACAGCAAGATATGCAAGCATGAACACCCACCTTGGGATTGAGGCGGGACATGTGAGTTATGGTGAGCTACATGATGGGAATTCTGGAAGTTTACCTACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006897 GO:0008150 GO:0008152 GO:0008360 GO:0009506 GO:0009987 GO:0016192 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0022603 GO:0022604 GO:0030054 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051234 GO:0055044 GO:0065007 GO:0065008 GO:0071704 GO:0098657 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

Pkinase

Protein Analysis

181

Amino Acids

20.26

Weight (kDa)

4.84

Isoelectric Point (pI)

33.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	29 - 138	4.5e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26100 AT5G57015
fragaria_vesca	FvH4_1g07860 FvH4_1g07860
malus_domestica	MD02G1082400.v1.1 MD15G1210300.v1.1
prunus_persica	Prupe.3G046000_v2.0.a1 Prupe.7G206400_v2.0.a1
pyrus_communis	pycom02g06530 pycom15g18640
rosa_chinensis	RchiOBHm_Chr2g0093731
rosa_laevigata	RLG00000016433 RLG00000034433
rosa_multiflora	Rmu_co8213396.1_g000001 Rmu_co8410961.1_g000001 Rmu_sc0002126.1_g000006
rosa_roxburghii	Rroxscaffold_2G00147840
rosa_rugosa	Rorug02G0039400
rosa_samantha	Rh2AG086000 Rh2BG086100 Rh2CG088500 Rh2DG084100 Rh2DG455700 Rh5DG001800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	68
AciI	CCGC	4 cut(s)	75, 226, 340, 485
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	200, 350
AcsI	RAATTY	1 cut(s)	520
AcyI	GRCGYC	1 cut(s)	69
AfiI	CCNNNNNNNGG	2 cut(s)	62, 474
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	2 cut(s)	242, 290
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	3 cut(s)	121, 397, 508
AluI	AGCT	3 cut(s)	121, 397, 508
Alw26I	GTCTC	1 cut(s)	323
AlwI	GGATC	2 cut(s)	200, 350
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	520
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	3 cut(s)	53, 84, 278
AsuHPI	GGTGA	1 cut(s)	515
AvaII	GGWCC	2 cut(s)	84, 278
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	1 cut(s)	520
BbsI	GAAGAC	2 cut(s)	155, 297
BccI	CCATC	2 cut(s)	417, 509
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciVI	GTATCC	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	323
BfaI	CTAG	3 cut(s)	275, 282, 398
BfoI	RGCGCY	1 cut(s)	72
BfuI	GTATCC	1 cut(s)	207
Bme18I	GGWCC	2 cut(s)	84, 278
BmgT120I	GGNCC	3 cut(s)	53, 84, 278
BmiI	GGNNCC	2 cut(s)	55, 70
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	155, 297
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	6, 472
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 474
Bse118I	RCCGGY	1 cut(s)	71
Bse1I	ACTGG	1 cut(s)	214
BseDI	CCNNGG	2 cut(s)	6, 472
BseGI	GGATG	2 cut(s)	157, 428
BseLI	CCNNNNNNNGG	2 cut(s)	62, 474
BseMII	CTCAG	1 cut(s)	176
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	23
BshFI	GGCC	1 cut(s)	54
BshNI	GGYRCC	1 cut(s)	68
BsiSI	CCGG	1 cut(s)	72
BslFI	GGGAC	1 cut(s)	501
BslI	CCNNNNNNNGG	2 cut(s)	62, 474
BsmAI	GTCTC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	192, 342
BspACI	CCGC	4 cut(s)	75, 226, 340, 485
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	55, 70
BspPI	GGATC	2 cut(s)	200, 350
BspT107I	GGYRCC	1 cut(s)	68
BsrFI	RCCGGY	1 cut(s)	71
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	2 cut(s)	6, 472
BssMI	GATC	2 cut(s)	192, 342
BssNI	GRCGYC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	472
Bst6I	CTCTTC	2 cut(s)	21, 99
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	73, 457
BstDEI	CTNAG	2 cut(s)	162, 540
BstF5I	GGATG	2 cut(s)	157, 428
BstH2I	RGCGCY	1 cut(s)	72
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	2 cut(s)	195, 345
BstMAI	GTCTC	1 cut(s)	323
BstMBI	GATC	2 cut(s)	192, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	452
BstNSI	RCATGY	1 cut(s)	494
BstV2I	GAAGAC	2 cut(s)	155, 297
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	157, 428
Cac8I	GCNNGC	2 cut(s)	73, 457
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	71
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	3 cut(s)	53, 84, 278
CviAII	CATG	5 cut(s)	62, 412, 460, 491, 512
CviJI	RGCY	4 cut(s)	54, 121, 397, 508
CviKI_1	RGCY	4 cut(s)	54, 121, 397, 508
DdeI	CTNAG	2 cut(s)	162, 540
DinI	GGCGCC	1 cut(s)	70
DpnI	GATC	2 cut(s)	194, 344
DpnII	GATC	2 cut(s)	192, 342
Eam1104I	CTCTTC	2 cut(s)	21, 99
EarI	CTCTTC	2 cut(s)	21, 99
Eco130I	CCWWGG	1 cut(s)	472
Eco32I	GATATC	1 cut(s)	391
Eco47I	GGWCC	2 cut(s)	84, 278
EcoO109I	RGGNCCY	1 cut(s)	278
EcoRI	GAATTC	1 cut(s)	520
EcoRV	GATATC	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	472
EgeI	GGCGCC	1 cut(s)	70
EheI	GGCGCC	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	5 cut(s)	65, 415, 463, 494, 515
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	5 cut(s)	61, 411, 459, 490, 511
FauI	CCCGC	2 cut(s)	68, 478
FokI	GGATG	2 cut(s)	144, 435
FspBI	CTAG	3 cut(s)	275, 282, 398
GlaI	GCGC	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	1 cut(s)	72
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	5 cut(s)	65, 415, 463, 494, 515
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	2 cut(s)	79, 176
HpaII	CCGG	1 cut(s)	72
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	2 cut(s)	355, 533
Hpy188I	TCNGA	2 cut(s)	84, 96
Hpy188III	TCNNGA	3 cut(s)	287, 386, 525
Hpy8I	GTNNAC	2 cut(s)	355, 533
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	2 cut(s)	13, 236
HpyCH4IV	ACGT	1 cut(s)	255
HpyCH4V	TGCA	2 cut(s)	309, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	452
HpyF3I	CTNAG	2 cut(s)	162, 540
HpySE526I	ACGT	1 cut(s)	255
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	5 cut(s)	65, 415, 463, 494, 515
HspAI	GCGC	1 cut(s)	69
KasI	GGCGCC	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	71
KroNI	GCCGGC	1 cut(s)	73
Kzo9I	GATC	2 cut(s)	192, 342
LpnPI	CCDG	4 cut(s)	85, 107, 195, 510
MaeI	CTAG	3 cut(s)	275, 282, 398
MaeII	ACGT	1 cut(s)	255
MalI	GATC	2 cut(s)	194, 344
MboI	GATC	2 cut(s)	192, 342
MboII	GAAGA	4 cut(s)	38, 116, 160, 302
MfeI	CAATTG	1 cut(s)	346
MflI	RGATCY	1 cut(s)	192
MluCI	AATT	5 cut(s)	130, 346, 403, 430, 520
Mly113I	GGCGCC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	62
MnlI	CCTC	9 cut(s)	4, 16, 22, 59, 100, 130, 171, 197, 475
MreI	CGCCGGCG	1 cut(s)	71
MroNI	GCCGGC	1 cut(s)	71
MseI	TTAA	2 cut(s)	117, 300
MspI	CCGG	1 cut(s)	72
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	452
NaeI	GCCGGC	1 cut(s)	73
NarI	GGCGCC	1 cut(s)	69
NdeII	GATC	2 cut(s)	192, 342
NgoMIV	GCCGGC	1 cut(s)	71
NlaIII	CATG	5 cut(s)	65, 415, 463, 494, 515
NlaIV	GGNNCC	2 cut(s)	55, 70
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PdiI	GCCGGC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	87
PluTI	GGCGCC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	87
PpuMI	RGGWCCY	1 cut(s)	278
PscI	ACATGT	1 cut(s)	490
PsiI	TTATAA	1 cut(s)	252
Psp1406I	AACGTT	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	278
PspN4I	GGNNCC	2 cut(s)	55, 70
PspPI	GGNCC	3 cut(s)	53, 84, 278
PspPPI	RGGWCCY	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	117, 300
Sau3AI	GATC	2 cut(s)	192, 342
Sau96I	GGNCC	3 cut(s)	53, 84, 278
SchI	GAGTC	1 cut(s)	88
SetI	ASST	8 cut(s)	111, 123, 258, 280, 399, 474, 510, 538
SfoI	GGCGCC	1 cut(s)	70
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	84, 278
Sse9I	AATT	5 cut(s)	130, 346, 403, 430, 520
SsiI	CCGC	4 cut(s)	75, 226, 340, 485
SspDI	GGCGCC	1 cut(s)	68
SspI	AATATT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	275, 282, 398
StyI	CCWWGG	1 cut(s)	472
TaiI	ACGT	1 cut(s)	258
TaqII	GACCGA	1 cut(s)	20
TasI	AATT	5 cut(s)	130, 346, 403, 430, 520
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	2 cut(s)	117, 300
Tru9I	TTAA	2 cut(s)	117, 300
TspDTI	ATGAA	3 cut(s)	60, 353, 476
VpaK11BI	GGWCC	2 cut(s)	84, 278
XapI	RAATTY	1 cut(s)	520
XceI	RCATGY	1 cut(s)	494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	225
XspI	CTAG	3 cut(s)	275, 282, 398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.