pycom02g09180

Belongs to the UPP synthase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
6321964 .. 6324090
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g09180.3

Sequence Viewer

Length: 1395 bp
ATGATGGAGAAAAACAGTGTGATTAGTGAAAGCGAAAGCAGGGCAATTGCAAGCCAAAAGTTGGGGGGTTTAGGCACTTTTCTGAGGATATGCTTGTTCAGTGTCATCTCTGTGGGTCCCATTCCAGGCCACAAAGCCGGATTTCTGTCTCTCATGTCGATTCTCCGGTACTGCTACGAGTTGGGAGAGAAGTATGTGACGGTCTATGCCTTCAGCATTGACAATTTCAAGAGGCGGCCCGACGAGGTGAAAACTCTGATGGACTTGTTGCAGGAGAAGATTAAAGGGTTGCTTGAGAAAGAAAGCATTGTAAACCAGTTTGGCATTCGGGTATACTTTATCGGATCGATCTGTGTGGCTTGTACTTCTTGTGATGAGATTGTCCATGCTGTTGAAGAATCCTGCAACGTGAAAAAGAGCGAAATTCGAGCACAGATTAACGGAACAAAGGGTGGCCCTTGCAATGAGAAAGTTGAGGGGGAGGAGAAGGAAAACACAAGGGTTAAACATGTCAAAAAAGATGAAGGGGAATTTCTAGAGAGTGAGAAGCAGCTTCCTGTTGTAAAGGTAGTGGATGTTGAGAAGCACTTGTACATGTCAGTGGCACCTGATCCAGACATTTTGATTCGAACTTCAGGTGAGACACGCTTAAGCAATTTTCTGCTTCGGCAAACTTCTAACTGCCCGTTGTACTCCCCTGCTGCACTGTGGCCGGATTTGGGTTTGCGGCACTTGGTTTGGGCAATTCTGAACTTCCAGAGAAACCACTACTATTTGGAGAAGAAAAGGAATGTTCTCCAAGTTCTTGATGCTAGAACTGCCATGGCTCTCGCTCTGCGATTTGATATAGTTCTTCTTATGGTTCTACTTTCCGCCCTCCTCCTAACTAAAGCCGCCTCTAAGTCTCGTCGCCACCATGACCGTCACCACCATCATCTCAAGTCCCTCCACTTCACTCTCTTTCAACACAAAACCATAAAGAGAACCGGATATATTGTAGTGAATGGTTTAACAGGACCAGGCGTAAGTCAAACCACTACCCCTTTTGGCACCGTGTTTGTTGTCCAGGATCCGATGACTGTGACAGCCAATCGATCTTCGAAAGCAGTTGGGATAGCTCAAGGAACTACCGTCACATCCAGCTTAGATGGGCTTCAGAGCATTTCAGTGGCTAAGATCACTCTGCGCTTGAAGAACCACTCTGGTTCAGTTTCTATAGTCGGAGACATGCATAATGTGAAGCCCACCGATCATCCTGTTGTGGGAGGCACCGGCAATTTCCTGTTTGTTCAAGGCTACGTGACATCGTCCCCTGTCGATCTCAGGGGCCTAACTGTTGTCTACAAGATTGCATTTCACCTTTACTGGCCTCCATATGTAACTCAATCTTCTTAA

Protein Analysis

465

Amino Acids

51.62

Weight (kDa)

9.24

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014634)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 604, 1049, 1268
AccB7I CCANNNNNTGG 1 cut(s) 61
AccI GTMKAC 2 cut(s) 333, 1341
AciI CCGC 4 cut(s) 235, 727, 873, 894
AclWI GGATC 4 cut(s) 352, 605, 1064, 1077
AcoI YGGCCR 1 cut(s) 710
AcsI RAATTY 2 cut(s) 423, 530
AcuI CTGAAG 3 cut(s) 196, 618, 1139
AfaI GTAC 4 cut(s) 170, 364, 593, 692
AfiI CCNNNNNNNGG 4 cut(s) 61, 125, 719, 1262
AflII CTTAAG 1 cut(s) 649
AflIII ACRYGT 2 cut(s) 508, 594
AgsI TTSAA 5 cut(s) 229, 395, 965, 1192, 1292
AjnI CCWGG 3 cut(s) 124, 1018, 1065
AluBI AGCT 3 cut(s) 553, 1118, 1143
AluI AGCT 3 cut(s) 553, 1118, 1143
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 4 cut(s) 153, 635, 909, 1218
AlwI GGATC 4 cut(s) 352, 605, 1064, 1077
AoxI GGCC 6 cut(s) 127, 236, 454, 710, 1327, 1367
ApeKI GCWGC 2 cut(s) 550, 701
ApoI RAATTY 2 cut(s) 423, 530
AspLEI GCGC 1 cut(s) 1188
AspS9I GGNCC 5 cut(s) 116, 237, 455, 1016, 1327
AsuHPI GGTGA 4 cut(s) 259, 650, 917, 1349
AsuII TTCGAA 2 cut(s) 628, 1100
AvaII GGWCC 2 cut(s) 116, 1016
BamHI GGATCC 1 cut(s) 1069
BanI GGYRCC 3 cut(s) 604, 1049, 1268
BarI GAAGNNNNNNTAC 2 cut(s) 575, 607
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 2 cut(s) 562, 688
BccI CCATC 3 cut(s) 253, 939, 1142
BciT130I CCWGG 3 cut(s) 126, 1020, 1067
BcoDI GTCTC 4 cut(s) 153, 635, 909, 1218
BfaI CTAG 2 cut(s) 536, 813
BfmI CTRYAG 1 cut(s) 1215
BfrI CTTAAG 1 cut(s) 649
BisI GCNGC 5 cut(s) 236, 551, 702, 728, 894
BlsI GCNGC 5 cut(s) 237, 552, 703, 729, 895
Bme1390I CCNGG 3 cut(s) 126, 1020, 1067
Bme18I GGWCC 2 cut(s) 116, 1016
BmgT120I GGNCC 5 cut(s) 116, 237, 455, 1016, 1327
BmiI GGNNCC 7 cut(s) 117, 118, 606, 1051, 1071, 1270, 1328
BmrFI CCNGG 3 cut(s) 126, 1020, 1067
BmsI GCATC 1 cut(s) 799
Bpu14I TTCGAA 2 cut(s) 628, 1100
BpuEI CTTGAG 3 cut(s) 314, 923, 1104
Bsa29I ATCGAT 2 cut(s) 347, 1093
BsaAI YACGTR 1 cut(s) 1300
BsaJI CCNNGG 1 cut(s) 822
BsaWI WCCGGW 2 cut(s) 165, 986
Bsc4I CCNNNNNNNGG 4 cut(s) 61, 125, 719, 1262
Bse118I RCCGGY 1 cut(s) 1271
Bse1I ACTGG 2 cut(s) 316, 1370
Bse3DI GCAATG 1 cut(s) 469
BseBI CCWGG 3 cut(s) 126, 1020, 1067
BseCI ATCGAT 2 cut(s) 347, 1093
BseDI CCNNGG 1 cut(s) 822
BseGI GGATG 3 cut(s) 580, 1136, 1252
BseLI CCNNNNNNNGG 4 cut(s) 61, 125, 719, 1262
BseMI GCAATG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 74, 1336
BseNI ACTGG 2 cut(s) 316, 1370
BseRI GAGGAG 2 cut(s) 497, 869
BseXI GCAGC 2 cut(s) 562, 688
BsgI GTGCAG 1 cut(s) 687
BshFI GGCC 6 cut(s) 129, 238, 456, 712, 1329, 1369
BshNI GGYRCC 3 cut(s) 604, 1049, 1268
BshVI ATCGAT 2 cut(s) 347, 1093
BsiHKAI GWGCWC 1 cut(s) 433
BsiSI CCGG 5 cut(s) 138, 166, 713, 987, 1272
BslFI GGGAC 3 cut(s) 102, 928, 1294
BslI CCNNNNNNNGG 4 cut(s) 61, 125, 719, 1262
BsmAI GTCTC 4 cut(s) 153, 635, 909, 1218
BsmFI GGGAC 3 cut(s) 102, 928, 1294
BsmI GAATGC 1 cut(s) 324
BsnI GGCC 6 cut(s) 129, 238, 456, 712, 1329, 1369
Bsp119I TTCGAA 2 cut(s) 628, 1100
Bsp1286I GDGCHC 1 cut(s) 433
Bsp1407I TGTACA 1 cut(s) 591
Bsp143I GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 4 cut(s) 235, 727, 873, 894
BspANI GGCC 6 cut(s) 129, 238, 456, 712, 1329, 1369
BspCNI CTCAG 2 cut(s) 75, 1335
BspDI ATCGAT 2 cut(s) 347, 1093
BspLI GGNNCC 7 cut(s) 117, 118, 606, 1051, 1071, 1270, 1328
BspPI GGATC 4 cut(s) 352, 605, 1064, 1077
BspT104I TTCGAA 2 cut(s) 628, 1100
BspT107I GGYRCC 3 cut(s) 604, 1049, 1268
BspTI CTTAAG 1 cut(s) 649
BsrDI GCAATG 1 cut(s) 469
BsrFI RCCGGY 1 cut(s) 1271
BsrGI TGTACA 1 cut(s) 591
BsrI ACTGG 2 cut(s) 316, 1370
BssAI RCCGGY 1 cut(s) 1271
BssECI CCNNGG 1 cut(s) 822
BssMI GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
BssNAI GTATAC 1 cut(s) 334
BssT1I CCWWGG 1 cut(s) 822
Bst1107I GTATAC 1 cut(s) 334
Bst2UI CCWGG 3 cut(s) 126, 1020, 1067
Bst4CI ACNGT 8 cut(s) 17, 202, 708, 923, 1054, 1081, 1132, 1336
BstAFI CTTAAG 1 cut(s) 649
BstAUI TGTACA 1 cut(s) 591
BstBAI YACGTR 1 cut(s) 1300
BstBI TTCGAA 2 cut(s) 628, 1100
BstC8I GCNNGC 1 cut(s) 52
BstDEI CTNAG 5 cut(s) 83, 900, 1144, 1173, 1322
BstDSI CCRYGG 1 cut(s) 822
BstF5I GGATG 3 cut(s) 580, 1136, 1252
BstHHI GCGC 1 cut(s) 1188
BstKTI GATC 8 cut(s) 347, 351, 613, 1072, 1097, 1179, 1252, 1321
BstMAI GTCTC 4 cut(s) 153, 635, 909, 1218
BstMBI GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
BstMWI GCNNNNNNNGC 1 cut(s) 818
BstNI CCWGG 3 cut(s) 126, 1020, 1067
BstNSI RCATGY 3 cut(s) 512, 598, 1231
BstSCI CCNGG 3 cut(s) 124, 1018, 1065
BstSFI CTRYAG 1 cut(s) 1215
BstV1I GCAGC 2 cut(s) 562, 688
BstX2I RGATCY 1 cut(s) 1069
BstYI RGATCY 1 cut(s) 1069
BstZ17I GTATAC 1 cut(s) 334
Bsu15I ATCGAT 2 cut(s) 347, 1093
BsuRI GGCC 6 cut(s) 129, 238, 456, 712, 1329, 1369
BsuTUI ATCGAT 2 cut(s) 347, 1093
BtgI CCRYGG 1 cut(s) 822
BtsCI GGATG 3 cut(s) 580, 1136, 1252
BtsIMutI CAGTG 5 cut(s) 22, 106, 606, 704, 1173
Cac8I GCNNGC 1 cut(s) 52
CfoI GCGC 1 cut(s) 1188
Cfr10I RCCGGY 1 cut(s) 1271
Cfr13I GGNCC 5 cut(s) 116, 237, 455, 1016, 1327
ClaI ATCGAT 2 cut(s) 347, 1093
Csp6I GTAC 4 cut(s) 169, 363, 592, 691
CviAII CATG 7 cut(s) 154, 386, 509, 595, 823, 917, 1228
CviQI GTAC 4 cut(s) 169, 363, 592, 691
DdeI CTNAG 5 cut(s) 83, 900, 1144, 1173, 1322
DpnI GATC 8 cut(s) 346, 350, 612, 1071, 1096, 1178, 1251, 1320
DpnII GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
EaeI YGGCCR 1 cut(s) 710
EciI GGCGGA 1 cut(s) 862
Eco130I CCWWGG 1 cut(s) 822
Eco47I GGWCC 2 cut(s) 116, 1016
Eco57I CTGAAG 3 cut(s) 196, 618, 1139
EcoO109I RGGNCCY 2 cut(s) 116, 1327
EcoRII CCWGG 3 cut(s) 124, 1018, 1065
EcoT14I CCWWGG 1 cut(s) 822
EcoT22I ATGCAT 1 cut(s) 1233
ErhI CCWWGG 1 cut(s) 822
FaeI CATG 7 cut(s) 157, 389, 512, 598, 826, 920, 1231
FalI AAGNNNNNCTT 2 cut(s) 276, 308
FaqI GGGAC 3 cut(s) 102, 928, 1294
FatI CATG 7 cut(s) 153, 385, 508, 594, 822, 916, 1227
FauNDI CATATG 1 cut(s) 1375
FblI GTMKAC 2 cut(s) 333, 1341
Fnu4HI GCNGC 5 cut(s) 236, 551, 702, 728, 894
FokI GGATG 3 cut(s) 587, 1123, 1239
Fsp4HI GCNGC 5 cut(s) 236, 551, 702, 728, 894
FspBI CTAG 2 cut(s) 536, 813
GlaI GCGC 1 cut(s) 1187
GluI GCNGC 5 cut(s) 236, 551, 702, 728, 894
HaeIII GGCC 6 cut(s) 129, 238, 456, 712, 1329, 1369
HapII CCGG 5 cut(s) 138, 166, 713, 987, 1272
HhaI GCGC 1 cut(s) 1188
Hin1II CATG 7 cut(s) 157, 389, 512, 598, 826, 920, 1231
Hin6I GCGC 1 cut(s) 1186
HinP1I GCGC 1 cut(s) 1186
HinfI GANTC 3 cut(s) 160, 398, 625
HpaII CCGG 5 cut(s) 138, 166, 713, 987, 1272
HphI GGTGA 4 cut(s) 259, 650, 917, 1349
Hpy166II GTNNAC 3 cut(s) 313, 334, 1342
Hpy188I TCNGA 7 cut(s) 84, 258, 344, 750, 1074, 1158, 1223
Hpy188III TCNNGA 5 cut(s) 229, 536, 614, 757, 806
Hpy8I GTNNAC 3 cut(s) 313, 334, 1342
Hpy99I CGWCG 2 cut(s) 245, 912
HpyAV CCTTC 3 cut(s) 220, 481, 518
HpyCH4III ACNGT 8 cut(s) 17, 202, 708, 923, 1054, 1081, 1132, 1336
HpyCH4IV ACGT 2 cut(s) 408, 1299
HpyCH4V TGCA 7 cut(s) 50, 271, 405, 462, 704, 1231, 1352
HpyF10VI GCNNNNNNNGC 1 cut(s) 818
HpyF3I CTNAG 5 cut(s) 83, 900, 1144, 1173, 1322
HpySE526I ACGT 2 cut(s) 408, 1299
Hsp92II CATG 7 cut(s) 157, 389, 512, 598, 826, 920, 1231
HspAI GCGC 1 cut(s) 1186
KflI GGGWCCC 1 cut(s) 116
Kzo9I GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
Lsp1109I GCAGC 2 cut(s) 562, 688
LweI GCATC 1 cut(s) 799
MaeI CTAG 2 cut(s) 536, 813
MaeII ACGT 2 cut(s) 408, 1299
MaeIII GTNAC 6 cut(s) 196, 923, 1081, 1132, 1300, 1378
MalI GATC 8 cut(s) 346, 350, 612, 1071, 1096, 1178, 1251, 1320
MboI GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
MboII GAAGA 7 cut(s) 289, 407, 793, 845, 1089, 1204, 1380
MfeI CAATTG 1 cut(s) 45
MflI RGATCY 1 cut(s) 1069
MhlI GDGCHC 1 cut(s) 433
MluCI AATT 7 cut(s) 45, 223, 423, 530, 655, 744, 1276
MmeI TCCRAC 1 cut(s) 1201
Mph1103I ATGCAT 1 cut(s) 1233
MseI TTAA 6 cut(s) 282, 438, 504, 650, 1010, 1393
MslI CAYNNNNRTG 3 cut(s) 110, 599, 1166
MspCI CTTAAG 1 cut(s) 649
MspI CCGG 5 cut(s) 138, 166, 713, 987, 1272
MspR9I CCNGG 3 cut(s) 126, 1020, 1067
MunI CAATTG 1 cut(s) 45
Mva1269I GAATGC 1 cut(s) 324
MvaI CCWGG 3 cut(s) 126, 1020, 1067
MwoI GCNNNNNNNGC 1 cut(s) 818
NcoI CCATGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 1375
NdeII GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
NlaIII CATG 7 cut(s) 157, 389, 512, 598, 826, 920, 1231
NlaIV GGNNCC 7 cut(s) 117, 118, 606, 1051, 1071, 1270, 1328
NmuCI GTSAC 5 cut(s) 196, 923, 1081, 1132, 1300
NsiI ATGCAT 1 cut(s) 1233
NspI RCATGY 3 cut(s) 512, 598, 1231
NspV TTCGAA 2 cut(s) 628, 1100
PciI ACATGT 2 cut(s) 508, 594
PctI GAATGC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 160, 398, 625
PflFI GACNNNGTC 1 cut(s) 1306
PflMI CCANNNNNTGG 1 cut(s) 61
PfoI TCCNGGA 1 cut(s) 1065
PkrI GCNGC 5 cut(s) 237, 552, 703, 729, 895
Ppu21I YACGTR 1 cut(s) 1300
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 2 cut(s) 508, 594
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 124, 1018, 1065
PspGI CCWGG 3 cut(s) 124, 1018, 1065
PspN4I GGNNCC 7 cut(s) 117, 118, 606, 1051, 1071, 1270, 1328
PspPI GGNCC 5 cut(s) 116, 237, 455, 1016, 1327
PspPPI RGGWCCY 1 cut(s) 116
PsuI RGATCY 1 cut(s) 1069
PsyI GACNNNGTC 1 cut(s) 1306
RsaI GTAC 4 cut(s) 170, 364, 593, 692
RsaNI GTAC 4 cut(s) 169, 363, 592, 691
RseI CAYNNNNRTG 3 cut(s) 110, 599, 1166
SaqAI TTAA 6 cut(s) 282, 438, 504, 650, 1010, 1393
SatI GCNGC 5 cut(s) 236, 551, 702, 728, 894
Sau3AI GATC 8 cut(s) 344, 348, 610, 1069, 1094, 1176, 1249, 1318
Sau96I GGNCC 5 cut(s) 116, 237, 455, 1016, 1327
ScrFI CCNGG 3 cut(s) 126, 1020, 1067
SduI GDGCHC 1 cut(s) 433
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 1215
SfuI TTCGAA 2 cut(s) 628, 1100
SinI GGWCC 2 cut(s) 116, 1016
SmiMI CAYNNNNRTG 3 cut(s) 110, 599, 1166
SmlI CTYRAG 4 cut(s) 293, 649, 938, 1119
SmoI CTYRAG 4 cut(s) 293, 649, 938, 1119
Sse9I AATT 7 cut(s) 45, 223, 423, 530, 655, 744, 1276
SsiI CCGC 4 cut(s) 235, 727, 873, 894
SspMI CTAG 2 cut(s) 536, 813
StyD4I CCNGG 3 cut(s) 124, 1018, 1065
StyI CCWWGG 1 cut(s) 822
TaaI ACNGT 8 cut(s) 17, 202, 708, 923, 1054, 1081, 1132, 1336
TaiI ACGT 2 cut(s) 411, 1302
TaqI TCGA 7 cut(s) 158, 347, 427, 628, 1093, 1100, 1317
TasI AATT 7 cut(s) 45, 223, 423, 530, 655, 744, 1276
TatI WGTACW 3 cut(s) 362, 591, 690
TauI GCSGC 3 cut(s) 238, 730, 896
TfiI GAWTC 3 cut(s) 160, 398, 625
Tru1I TTAA 6 cut(s) 282, 438, 504, 650, 1010, 1393
Tru9I TTAA 6 cut(s) 282, 438, 504, 650, 1010, 1393
TscAI CASTG 5 cut(s) 22, 106, 606, 711, 1173
TseFI GTSAC 5 cut(s) 196, 923, 1081, 1132, 1300
TseI GCWGC 2 cut(s) 550, 701
Tsp45I GTSAC 5 cut(s) 196, 923, 1081, 1132, 1300
TspDTI ATGAA 1 cut(s) 537
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 5 cut(s) 22, 106, 606, 711, 1173
Tth111I GACNNNGTC 1 cut(s) 1306
Van91I CCANNNNNTGG 1 cut(s) 61
Vha464I CTTAAG 1 cut(s) 649
VpaK11BI GGWCC 2 cut(s) 116, 1016
XapI RAATTY 2 cut(s) 423, 530
XbaI TCTAGA 1 cut(s) 535
XceI RCATGY 3 cut(s) 512, 598, 1231
XmiI GTMKAC 2 cut(s) 333, 1341
XspI CTAG 2 cut(s) 536, 813
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.