Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0014634

Physical Location & Seq

Genomic Coordinates Forward (+)

14844917 .. 14846850

Gene Structure 1934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g20710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGTTGGTTCTCCGGTACTGCTACGAGTTGTTGGTAAAGTATGTGATGGTCTCTGCCTTCGGCATTGATAATTTCAAGCGGCCATCCGACGAGGTGCAAATTCTGATGGATTTGTTGCAGGAGAAGATTGAGGGGTTGCTTGAGAGAGAAAGCATTATAAACCAGTATGGCATTCGAGTATACTTTATCGGTAACTTGAAGCTTTTGAATGAGTCGGTGAGGGATGCTGCTGAAAAGGCAACGAAGGCCACTGCCAATAATTCCAAGGCCGTGCTTTTAATCTGTGTGGCTTATTCTTCTCGTGACGAGATTGTGCATGCTGTTCAAGAATCCTGCTACGAGAAAAGGAACGAAATTCAAGCACAGATTAAAAGAATGAGGGGTGGCAATGGCGGTTTGGATGGAGAAGCAGGACTAGACACCAGTGAAGCTTGCAATGAGAGAGTTGAGGGGGAGAAGAAGGAAAATACAATGCAGTTGCAAAATGTTCCTGTTGTAAAGGTAGTGGATGTTGAGAGGCACATGTACATGGCAGTGGCACCTGATCCAAACATTGTGATTCGAACTTCGGGTGAGACACGCCTAAGCAATTTTCTGCTTTGGCAAACTTCTAACTGCCCGTTGTACTTTCCTGCTGCGCTGTGGCCGGATTTGGGTTTGTGGCACTTGGTTTGGGCAATTCTGAACTTCCAGAGAAACCACTACTATTTGGAGAAGAAAGGGAGTGTTCTTCATGCTAAAACTGTCATGGCTCATGCTCTGCGATTCGATACAGTTCTTCCGGTTCTGCTTTGCACCCTCCTCCTAACCAAAGCCGCCTCTACCTCTCATCACCACCATCTTAAGTCCCTCCACTTCTCACTCTTTCAACACGAAACCATAAACAAAACCGGATATATTGTAGTGAATGGGGTGGCTGGAACAGGCATCGGTCAAACCACTACGCCCTTTGGCACCGTGTTTGTTTTCCAGGATCCGATGACTCTCACAGCCAACCGATCTTCAAAAGCAGTTGGGATAGCTCAAGGAACTTCAGTCACATCCAGCTTGGATGGGCTTCAGAGCATTTCAGTAGCCAAGATCACTTTGCGCTTGAAGAACTACTCTGGTTCAGTTTCCATAGTCGGAGGCACGCATAACGTGAAGCCCGCCAATCATCCTGTTGTGGGGGGCACGGGCGATTTCCTGTTTGTTCAAGGCTACGTGACATCGTCCCCTGTTGATCTCAAGGGCCTAACTGTTGTCTACAAGATTGCATTTCACCTTTACTGGCCTCCATATGCAACTCAAGCTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002094 GO:0003674 GO:0003824 GO:0004659 GO:0006066 GO:0006629 GO:0006720 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009987 GO:0016093 GO:0016094 GO:0016740 GO:0016765 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0046165 GO:0071704 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00900 ko01110 map00900 map01110

Pfam Domains

Protein Families

Prenyltransf

Protein Analysis

433

Amino Acids

47.82

Weight (kDa)

8.56

Isoelectric Point (pI)

30.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g10500
malus_domestica	MD02G1118100.v1.1 MD02G1118400.v1.1
prunus_persica	Prupe.7G181300_v2.0.a1
pyrus_communis	pycom02g09170 pycom02g09180 pycom15g20710
rosa_chinensis	RchiOBHm_Chr2g0097361
rosa_laevigata	RLG00000016720
rosa_multiflora	Rmu_sc0001060.1_g000010
rosa_roxburghii	Rroxscaffold_2G00144740
rosa_rugosa	Rorug02G0066000
rosa_samantha	Rh2AG112800 Rh2BG115600 Rh2CG117800 Rh2DG116800
rosa_wichuraiana	Rw2G008830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
AccB1I	GGYRCC	2 cut(s)	538, 953
AccI	GTMKAC	2 cut(s)	180, 1245
AciI	CCGC	4 cut(s)	79, 393, 816, 1149
AclWI	GGATC	3 cut(s)	539, 968, 981
AcoI	YGGCCR	2 cut(s)	80, 644
AcsI	RAATTY	2 cut(s)	99, 354
AcuI	CTGAAG	2 cut(s)	1017, 1043
AfaI	GTAC	3 cut(s)	17, 527, 626
AfiI	CCNNNNNNNGG	2 cut(s)	653, 1166
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	9 cut(s)	76, 199, 208, 326, 359, 869, 1005, 1096, 1196
AjnI	CCWGG	1 cut(s)	969
AluBI	AGCT	5 cut(s)	202, 431, 1022, 1047, 1292
AluI	AGCT	5 cut(s)	202, 431, 1022, 1047, 1292
Alw26I	GTCTC	2 cut(s)	55, 569
AlwI	GGATC	3 cut(s)	539, 968, 981
AoxI	GGCC	6 cut(s)	80, 246, 267, 644, 1231, 1271
ApeKI	GCWGC	2 cut(s)	227, 635
ApoI	RAATTY	2 cut(s)	99, 354
AspLEI	GCGC	2 cut(s)	640, 1092
AspS9I	GGNCC	1 cut(s)	1231
AsuHPI	GGTGA	4 cut(s)	229, 584, 824, 1253
AsuII	TTCGAA	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	1175
BamHI	GGATCC	1 cut(s)	973
BanI	GGYRCC	2 cut(s)	538, 953
BauI	CACGAG	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	214, 622
BccI	CCATC	6 cut(s)	40, 91, 100, 395, 846, 1046
BceAI	ACGGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	971
BcoDI	GTCTC	2 cut(s)	55, 569
BfaI	CTAG	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	842
BisI	GCNGC	4 cut(s)	80, 228, 636, 816
BlsI	GCNGC	4 cut(s)	81, 229, 637, 817
Bme1390I	CCNGG	1 cut(s)	971
BmgT120I	GGNCC	1 cut(s)	1231
BmiI	GGNNCC	3 cut(s)	540, 955, 975
BmrFI	CCNGG	1 cut(s)	971
BmsI	GCATC	2 cut(s)	214, 936
Bpu10I	CCTNAGC	1 cut(s)	584
Bpu14I	TTCGAA	1 cut(s)	562
BpuEI	CTTGAG	4 cut(s)	161, 1008, 1211, 1272
BsaAI	YACGTR	1 cut(s)	1204
BsaI	GGTCTC	1 cut(s)	55
BsaJI	CCNNGG	1 cut(s)	264
BsaWI	WCCGGW	3 cut(s)	12, 781, 890
Bsc4I	CCNNNNNNNGG	2 cut(s)	653, 1166
Bse1I	ACTGG	3 cut(s)	163, 423, 1274
Bse3DI	GCAATG	2 cut(s)	394, 442
BseBI	CCWGG	1 cut(s)	971
BseDI	CCNNGG	1 cut(s)	264
BseGI	GGATG	7 cut(s)	83, 229, 406, 514, 1040, 1057, 1156
BseLI	CCNNNNNNNGG	2 cut(s)	653, 1166
BseMI	GCAATG	2 cut(s)	394, 442
BseNI	ACTGG	3 cut(s)	163, 423, 1274
BseRI	GAGGAG	1 cut(s)	791
BseSI	GKGCMC	1 cut(s)	1175
BseXI	GCAGC	2 cut(s)	214, 622
BshFI	GGCC	6 cut(s)	82, 248, 269, 646, 1233, 1273
BshNI	GGYRCC	2 cut(s)	538, 953
BsiSI	CCGG	4 cut(s)	13, 647, 782, 891
BslFI	GGGAC	2 cut(s)	832, 1198
BslI	CCNNNNNNNGG	2 cut(s)	653, 1166
BsmAI	GTCTC	2 cut(s)	55, 569
BsmFI	GGGAC	2 cut(s)	832, 1198
BsmI	GAATGC	1 cut(s)	171
BsnI	GGCC	6 cut(s)	82, 248, 269, 646, 1233, 1273
Bso31I	GGTCTC	1 cut(s)	55
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	1175
Bsp1407I	TGTACA	1 cut(s)	525
Bsp143I	GATC	5 cut(s)	544, 973, 998, 1080, 1222
BspACI	CCGC	4 cut(s)	79, 393, 816, 1149
BspANI	GGCC	6 cut(s)	82, 248, 269, 646, 1233, 1273
BspLI	GGNNCC	3 cut(s)	540, 955, 975
BspPI	GGATC	3 cut(s)	539, 968, 981
BspT104I	TTCGAA	1 cut(s)	562
BspT107I	GGYRCC	2 cut(s)	538, 953
BspTI	CTTAAG	1 cut(s)	842
BspTNI	GGTCTC	1 cut(s)	55
BsrDI	GCAATG	2 cut(s)	394, 442
BsrGI	TGTACA	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	163, 423, 1274
BssECI	CCNNGG	1 cut(s)	264
BssMI	GATC	5 cut(s)	544, 973, 998, 1080, 1222
BssNAI	GTATAC	1 cut(s)	181
BssSI	CACGAG	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	264
Bst1107I	GTATAC	1 cut(s)	181
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	1 cut(s)	971
Bst4CI	ACNGT	4 cut(s)	745, 775, 958, 1240
BstAFI	CTTAAG	1 cut(s)	842
BstAUI	TGTACA	1 cut(s)	525
BstBAI	YACGTR	1 cut(s)	1204
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	4 cut(s)	318, 433, 1133, 1149
BstDEI	CTNAG	2 cut(s)	584, 1296
BstF5I	GGATG	7 cut(s)	83, 229, 406, 514, 1040, 1057, 1156
BstHHI	GCGC	2 cut(s)	640, 1092
BstKTI	GATC	5 cut(s)	547, 976, 1001, 1083, 1225
BstMAI	GTCTC	2 cut(s)	55, 569
BstMBI	GATC	5 cut(s)	544, 973, 998, 1080, 1222
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 245, 1289
BstNI	CCWGG	1 cut(s)	971
BstNSI	RCATGY	2 cut(s)	320, 526
BstSCI	CCNGG	1 cut(s)	969
BstSLI	GKGCMC	1 cut(s)	1175
BstV1I	GCAGC	2 cut(s)	214, 622
BstX2I	RGATCY	1 cut(s)	973
BstYI	RGATCY	1 cut(s)	973
BstZ17I	GTATAC	1 cut(s)	181
BsuRI	GGCC	6 cut(s)	82, 248, 269, 646, 1233, 1273
BtsCI	GGATG	7 cut(s)	83, 229, 406, 514, 1040, 1057, 1156
BtsI	GCAGTG	2 cut(s)	249, 540
BtsIMutI	CAGTG	3 cut(s)	249, 430, 540
Cac8I	GCNNGC	4 cut(s)	318, 433, 1133, 1149
CfoI	GCGC	2 cut(s)	640, 1092
Cfr13I	GGNCC	1 cut(s)	1231
Csp6I	GTAC	3 cut(s)	16, 526, 625
CviAII	CATG	6 cut(s)	317, 523, 529, 734, 748, 755
CviQI	GTAC	3 cut(s)	16, 526, 625
DdeI	CTNAG	2 cut(s)	584, 1296
DpnI	GATC	5 cut(s)	546, 975, 1000, 1082, 1224
DpnII	GATC	5 cut(s)	544, 973, 998, 1080, 1222
EaeI	YGGCCR	2 cut(s)	80, 644
Eco130I	CCWWGG	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	55
Eco57I	CTGAAG	2 cut(s)	1017, 1043
EcoO109I	RGGNCCY	1 cut(s)	1231
EcoRII	CCWGG	1 cut(s)	969
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	6 cut(s)	320, 526, 532, 737, 751, 758
FaqI	GGGAC	2 cut(s)	832, 1198
FatI	CATG	6 cut(s)	316, 522, 528, 733, 747, 754
FauI	CCCGC	1 cut(s)	1156
FauNDI	CATATG	1 cut(s)	1279
FblI	GTMKAC	2 cut(s)	180, 1245
Fnu4HI	GCNGC	4 cut(s)	80, 228, 636, 816
FokI	GGATG	7 cut(s)	70, 236, 413, 521, 1027, 1064, 1143
Fsp4HI	GCNGC	4 cut(s)	80, 228, 636, 816
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	2 cut(s)	639, 1091
GluI	GCNGC	4 cut(s)	80, 228, 636, 816
HaeIII	GGCC	6 cut(s)	82, 248, 269, 646, 1233, 1273
HapII	CCGG	4 cut(s)	13, 647, 782, 891
HhaI	GCGC	2 cut(s)	640, 1092
Hin1II	CATG	6 cut(s)	320, 526, 532, 737, 751, 758
Hin6I	GCGC	2 cut(s)	638, 1090
HinP1I	GCGC	2 cut(s)	638, 1090
HindIII	AAGCTT	3 cut(s)	200, 429, 1290
HinfI	GANTC	5 cut(s)	212, 329, 559, 765, 982
HpaII	CCGG	4 cut(s)	13, 647, 782, 891
HphI	GGTGA	4 cut(s)	229, 584, 824, 1253
Hpy166II	GTNNAC	2 cut(s)	181, 1246
Hpy188I	TCNGA	6 cut(s)	88, 105, 684, 978, 1062, 1127
Hpy188III	TCNNGA	3 cut(s)	302, 326, 691
Hpy8I	GTNNAC	2 cut(s)	181, 1246
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	67, 238, 454
HpyCH4III	ACNGT	4 cut(s)	745, 775, 958, 1240
HpyCH4IV	ACGT	2 cut(s)	1140, 1203
HpyCH4V	TGCA	9 cut(s)	97, 118, 316, 435, 475, 481, 795, 1256, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 245, 1289
HpyF3I	CTNAG	2 cut(s)	584, 1296
HpySE526I	ACGT	2 cut(s)	1140, 1203
Hsp92II	CATG	6 cut(s)	320, 526, 532, 737, 751, 758
HspAI	GCGC	2 cut(s)	638, 1090
Kzo9I	GATC	5 cut(s)	544, 973, 998, 1080, 1222
Lsp1109I	GCAGC	2 cut(s)	214, 622
LweI	GCATC	2 cut(s)	214, 936
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	1140, 1203
MaeIII	GTNAC	4 cut(s)	191, 302, 1036, 1204
MalI	GATC	5 cut(s)	546, 975, 1000, 1082, 1224
MboI	GATC	5 cut(s)	544, 973, 998, 1080, 1222
MboII	GAAGA	8 cut(s)	136, 288, 469, 722, 727, 770, 993, 1108
MflI	RGATCY	1 cut(s)	973
MhlI	GDGCHC	1 cut(s)	1175
MluCI	AATT	6 cut(s)	70, 99, 259, 354, 589, 678
MlyI	GAGTC	2 cut(s)	221, 976
MmeI	TCCRAC	2 cut(s)	111, 1105
MseI	TTAA	3 cut(s)	278, 369, 843
MslI	CAYNNNNRTG	2 cut(s)	527, 533
MspCI	CTTAAG	1 cut(s)	842
MspI	CCGG	4 cut(s)	13, 647, 782, 891
MspR9I	CCNGG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	971
MwoI	GCNNNNNNNGC	3 cut(s)	236, 245, 1289
NdeI	CATATG	1 cut(s)	1279
NdeII	GATC	5 cut(s)	544, 973, 998, 1080, 1222
NlaIII	CATG	6 cut(s)	320, 526, 532, 737, 751, 758
NlaIV	GGNNCC	3 cut(s)	540, 955, 975
NmuCI	GTSAC	3 cut(s)	302, 1036, 1204
NspI	RCATGY	2 cut(s)	320, 526
NspV	TTCGAA	1 cut(s)	562
PaeI	GCATGC	1 cut(s)	320
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	329, 559, 765
PflFI	GACNNNGTC	1 cut(s)	1210
PfoI	TCCNGGA	1 cut(s)	969
PkrI	GCNGC	4 cut(s)	81, 229, 637, 817
PleI	GAGTC	2 cut(s)	220, 976
PpsI	GAGTC	2 cut(s)	220, 976
Ppu21I	YACGTR	1 cut(s)	1204
PscI	ACATGT	1 cut(s)	522
PsiI	TTATAA	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	969
PspGI	CCWGG	1 cut(s)	969
PspN4I	GGNNCC	3 cut(s)	540, 955, 975
PspPI	GGNCC	1 cut(s)	1231
PsuI	RGATCY	1 cut(s)	973
PsyI	GACNNNGTC	1 cut(s)	1210
RsaI	GTAC	3 cut(s)	17, 527, 626
RsaNI	GTAC	3 cut(s)	16, 526, 625
RseI	CAYNNNNRTG	2 cut(s)	527, 533
SaqAI	TTAA	3 cut(s)	278, 369, 843
SatI	GCNGC	4 cut(s)	80, 228, 636, 816
Sau3AI	GATC	5 cut(s)	544, 973, 998, 1080, 1222
Sau96I	GGNCC	1 cut(s)	1231
SchI	GAGTC	2 cut(s)	221, 976
ScrFI	CCNGG	1 cut(s)	971
SduI	GDGCHC	1 cut(s)	1175
SfaNI	GCATC	2 cut(s)	214, 936
SfuI	TTCGAA	1 cut(s)	562
SmiMI	CAYNNNNRTG	2 cut(s)	527, 533
SmlI	CTYRAG	5 cut(s)	140, 842, 1023, 1226, 1287
SmoI	CTYRAG	5 cut(s)	140, 842, 1023, 1226, 1287
SphI	GCATGC	1 cut(s)	320
Sse9I	AATT	6 cut(s)	70, 99, 259, 354, 589, 678
SsiI	CCGC	4 cut(s)	79, 393, 816, 1149
SspMI	CTAG	1 cut(s)	416
StyD4I	CCNGG	1 cut(s)	969
StyI	CCWWGG	1 cut(s)	264
TaaI	ACNGT	4 cut(s)	745, 775, 958, 1240
TaiI	ACGT	2 cut(s)	1143, 1206
TaqI	TCGA	3 cut(s)	175, 562, 768
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	6 cut(s)	70, 99, 259, 354, 589, 678
TatI	WGTACW	2 cut(s)	525, 624
TauI	GCSGC	2 cut(s)	82, 818
TfiI	GAWTC	3 cut(s)	329, 559, 765
Tru1I	TTAA	3 cut(s)	278, 369, 843
Tru9I	TTAA	3 cut(s)	278, 369, 843
TscAI	CASTG	3 cut(s)	256, 430, 540
TseFI	GTSAC	3 cut(s)	302, 1036, 1204
TseI	GCWGC	2 cut(s)	227, 635
Tsp45I	GTSAC	3 cut(s)	302, 1036, 1204
TspDTI	ATGAA	1 cut(s)	722
TspRI	CASTG	3 cut(s)	256, 430, 540
Tth111I	GACNNNGTC	1 cut(s)	1210
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	2 cut(s)	99, 354
XceI	RCATGY	2 cut(s)	320, 526
XmiI	GTMKAC	2 cut(s)	180, 1245
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.