pycom02g11540

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0008485
Physical Location & Seq
Forward (+)
8134950 .. 8136825
1876 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 747 bp
ATGGTTGCTGCCTCGAAGCTATCTTCATGCATAGCAATGGCAGTCGCGGCTGTCTCCATGCCCGCGCTCTCCAACCGCGCCTACGCCGACTCTCCCTTCCGATTTAATCCGTTCTCGTACTCTTCTCCTTCTCCTCCTCCGCCTTCTGCCGCTCGTGCGGACCAGAGCCCCAATGCGAAATCGGAACCGCAAGCTGAAGAGCCCAGAGGGTCGGGGTTCGATCCCGAGGCTCTCGAACGAGGTGCCAAAGCTCTCCGCGAAATCAATTCCTCTAAATTATCGAAGCAGGTTTTTAGTCTGATGAGGAGCCAGGAAAAAAGTCGCCTCACTGAGTTGGAAGCGGAGAAGGCTCATTTTGAAGCAATACAGGCTCAAAATGATCTTGAAAGGAGTAAGAACATGGCTGAGGAACAACTAAATATACTGCAACAAGAAGCACAGGCAAAGGCTCAAATGCTTCGTATGGAAGATGAACATGCGAGGAATAGAATGAAGATGGATCATGAAAAGCAGAGGCAGAATAATGCTGAAATGCTTAGGATGCAAGAGGAGTCAAATATCCGAAAAGAGAGAGCAAGACTTGCTACTGAGGCACAGAAGCAAGAGCAGCAGCGCCAAACTGAAAGAGAGAAACATGAATTAGAACTAAAAAACATAGAAGCAGAAGCCATTGCAAATGCTAAAGGTCGGGCCCATGAAGCAAAACTGAATGCAGAACTTAACAGGAATATGCTTCTAGATCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA DUF3523

Protein Analysis

249

Amino Acids

28.1

Weight (kDa)

7.0

Isoelectric Point (pI)

69.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATAD3_N PF12037 55 - 247 1.2e-48 ATPase family AAA domain-containing protein 3, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 277
AccB1I GGYRCC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 152
AccII CGCG 4 cut(s) 47, 65, 78, 258
AciI CCGC 9 cut(s) 47, 63, 76, 140, 150, 158, 188, 256, 341
AclWI GGATC 2 cut(s) 215, 507
AcuI CTGAAG 1 cut(s) 216
AfaI GTAC 1 cut(s) 119
AgsI TTSAA 2 cut(s) 359, 386
AjnI CCWGG 1 cut(s) 309
AluBI AGCT 3 cut(s) 19, 194, 251
AluI AGCT 3 cut(s) 19, 194, 251
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 2 cut(s) 215, 507
Ama87I CYCGRG 1 cut(s) 224
AoxI GGCC 1 cut(s) 690
ApaI GGGCCC 1 cut(s) 694
ApeKI GCWGC 3 cut(s) 8, 607, 610
AspLEI GCGC 3 cut(s) 67, 80, 615
AspS9I GGNCC 3 cut(s) 160, 690, 691
AvaI CYCGRG 1 cut(s) 224
AvaII GGWCC 1 cut(s) 160
BaeGI GKGCMC 1 cut(s) 694
BanI GGYRCC 1 cut(s) 242
BanII GRGCYC 3 cut(s) 170, 204, 694
BauI CACGAG 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 405
BbvI GCAGC 2 cut(s) 619, 622
BccI CCATC 1 cut(s) 490
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 1 cut(s) 311
BcoDI GTCTC 1 cut(s) 58
BfaI CTAG 1 cut(s) 737
BfoI RGCGCY 1 cut(s) 616
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 5 cut(s) 9, 48, 150, 608, 611
BlsI GCNGC 5 cut(s) 10, 49, 151, 609, 612
Bme1390I CCNGG 1 cut(s) 311
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 160, 690, 691
BmiI GGNNCC 4 cut(s) 186, 244, 308, 692
BmrFI CCNGG 1 cut(s) 311
BmsI GCATC 1 cut(s) 531
Bpu10I CCTNAGC 2 cut(s) 405, 536
Bsa29I ATCGAT 1 cut(s) 742
BsaJI CCNNGG 1 cut(s) 225
Bse3DI GCAATG 2 cut(s) 42, 669
BseBI CCWGG 1 cut(s) 311
BseCI ATCGAT 1 cut(s) 742
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 1 cut(s) 546
BseMI GCAATG 2 cut(s) 42, 669
BseMII CTCAG 3 cut(s) 321, 396, 579
BseRI GAGGAG 4 cut(s) 123, 126, 319, 563
BseSI GKGCMC 1 cut(s) 694
BseXI GCAGC 2 cut(s) 619, 622
Bsh1236I CGCG 4 cut(s) 47, 65, 78, 258
BshFI GGCC 1 cut(s) 692
BshNI GGYRCC 1 cut(s) 242
BshVI ATCGAT 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 224
BsmAI GTCTC 1 cut(s) 58
BsmI GAATGC 1 cut(s) 715
BsnI GGCC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 224
Bsp120I GGGCCC 1 cut(s) 690
Bsp1286I GDGCHC 3 cut(s) 170, 204, 694
Bsp143I GATC 4 cut(s) 220, 379, 499, 739
BspACI CCGC 9 cut(s) 47, 63, 76, 140, 150, 158, 188, 256, 341
BspANI GGCC 1 cut(s) 692
BspCNI CTCAG 3 cut(s) 322, 397, 580
BspDI ATCGAT 1 cut(s) 742
BspFNI CGCG 4 cut(s) 47, 65, 78, 258
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 4 cut(s) 186, 244, 308, 692
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 2 cut(s) 215, 507
BspQI GCTCTTC 1 cut(s) 192
BspT107I GGYRCC 1 cut(s) 242
BsrBI CCGCTC 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 42, 669
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 4 cut(s) 220, 379, 499, 739
BssSI CACGAG 1 cut(s) 153
Bst2BI CACGAG 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 311
Bst6I CTCTTC 2 cut(s) 127, 192
BstAPI GCANNNNNTGC 1 cut(s) 581
BstC8I GCNNGC 2 cut(s) 63, 192
BstDEI CTNAG 4 cut(s) 330, 405, 536, 588
BstF5I GGATG 1 cut(s) 546
BstFNI CGCG 4 cut(s) 47, 65, 78, 258
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 3 cut(s) 67, 80, 615
BstKTI GATC 4 cut(s) 223, 382, 502, 742
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 4 cut(s) 220, 379, 499, 739
BstMWI GCNNNNNNNGC 9 cut(s) 47, 155, 347, 368, 541, 581, 590, 607, 698
BstNI CCWGG 1 cut(s) 311
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 309
BstSLI GKGCMC 1 cut(s) 694
BstUI CGCG 4 cut(s) 47, 65, 78, 258
BstV1I GCAGC 2 cut(s) 619, 622
Bsu15I ATCGAT 1 cut(s) 742
BsuRI GGCC 1 cut(s) 692
BsuTUI ATCGAT 1 cut(s) 742
BtsCI GGATG 1 cut(s) 546
BtsIMutI CAGTG 1 cut(s) 327
BveI ACCTGC 1 cut(s) 277
Cac8I GCNNGC 2 cut(s) 63, 192
CciI TCATGA 1 cut(s) 502
CfoI GCGC 3 cut(s) 67, 80, 615
Cfr13I GGNCC 3 cut(s) 160, 690, 691
ClaI ATCGAT 1 cut(s) 742
Csp6I GTAC 1 cut(s) 118
CviAII CATG 7 cut(s) 27, 58, 400, 476, 503, 635, 695
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 4 cut(s) 330, 405, 536, 588
DpnI GATC 4 cut(s) 222, 381, 501, 741
DpnII GATC 4 cut(s) 220, 379, 499, 739
Eam1104I CTCTTC 2 cut(s) 127, 192
EarI CTCTTC 2 cut(s) 127, 192
EciI GGCGGA 1 cut(s) 129
Eco24I GRGCYC 3 cut(s) 170, 204, 694
Eco47I GGWCC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 216
Eco88I CYCGRG 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 309
EcoT22I ATGCAT 1 cut(s) 32
EcoT38I GRGCYC 3 cut(s) 170, 204, 694
FaeI CATG 7 cut(s) 30, 61, 403, 479, 506, 638, 698
FatI CATG 7 cut(s) 26, 57, 399, 475, 502, 634, 694
FauI CCCGC 1 cut(s) 70
Fnu4HI GCNGC 5 cut(s) 9, 48, 150, 608, 611
FokI GGATG 1 cut(s) 553
FriOI GRGCYC 3 cut(s) 170, 204, 694
Fsp4HI GCNGC 5 cut(s) 9, 48, 150, 608, 611
FspBI CTAG 1 cut(s) 737
GlaI GCGC 3 cut(s) 66, 79, 614
GluI GCNGC 5 cut(s) 9, 48, 150, 608, 611
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 1 cut(s) 692
HhaI GCGC 3 cut(s) 67, 80, 615
Hin1II CATG 7 cut(s) 30, 61, 403, 479, 506, 638, 698
Hin6I GCGC 3 cut(s) 65, 78, 613
HinP1I GCGC 3 cut(s) 65, 78, 613
HinfI GANTC 2 cut(s) 89, 551
Hpy188I TCNGA 4 cut(s) 101, 184, 300, 563
Hpy188III TCNNGA 5 cut(s) 224, 233, 383, 503, 737
HpyAV CCTTC 4 cut(s) 106, 138, 153, 340
HpyCH4V TGCA 5 cut(s) 30, 427, 544, 674, 713
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 155, 347, 368, 541, 581, 590, 607, 698
HpyF3I CTNAG 4 cut(s) 330, 405, 536, 588
Hsp92II CATG 7 cut(s) 30, 61, 403, 479, 506, 638, 698
HspAI GCGC 3 cut(s) 65, 78, 613
Kzo9I GATC 4 cut(s) 220, 379, 499, 739
LguI GCTCTTC 1 cut(s) 192
LmnI GCTCC 1 cut(s) 306
LpnPI CCDG 8 cut(s) 176, 217, 272, 296, 323, 353, 425, 709
Lsp1109I GCAGC 2 cut(s) 619, 622
LweI GCATC 1 cut(s) 531
MaeI CTAG 1 cut(s) 737
MalI GATC 4 cut(s) 222, 381, 501, 741
MbiI CCGCTC 1 cut(s) 152
MboI GATC 4 cut(s) 220, 379, 499, 739
MboII GAAGA 5 cut(s) 15, 114, 209, 479, 505
MhlI GDGCHC 3 cut(s) 170, 204, 694
MluCI AATT 3 cut(s) 265, 275, 638
MlyI GAGTC 2 cut(s) 83, 560
MmeI TCCRAC 2 cut(s) 96, 315
Mph1103I ATGCAT 1 cut(s) 32
MseI TTAA 2 cut(s) 105, 720
MslI CAYNNNNRTG 1 cut(s) 35
MspR9I CCNGG 1 cut(s) 311
Mva1269I GAATGC 1 cut(s) 715
MvaI CCWGG 1 cut(s) 311
MvnI CGCG 4 cut(s) 47, 65, 78, 258
MwoI GCNNNNNNNGC 9 cut(s) 47, 155, 347, 368, 541, 581, 590, 607, 698
NdeII GATC 4 cut(s) 220, 379, 499, 739
NlaIII CATG 7 cut(s) 30, 61, 403, 479, 506, 638, 698
NlaIV GGNNCC 4 cut(s) 186, 244, 308, 692
NsiI ATGCAT 1 cut(s) 32
NspI RCATGY 1 cut(s) 479
PagI TCATGA 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 192
PctI GAATGC 1 cut(s) 715
PkrI GCNGC 5 cut(s) 10, 49, 151, 609, 612
PleI GAGTC 2 cut(s) 83, 559
PpsI GAGTC 2 cut(s) 83, 559
Psp6I CCWGG 1 cut(s) 309
PspGI CCWGG 1 cut(s) 309
PspN4I GGNNCC 4 cut(s) 186, 244, 308, 692
PspOMI GGGCCC 1 cut(s) 690
PspPI GGNCC 3 cut(s) 160, 690, 691
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
RseI CAYNNNNRTG 1 cut(s) 35
SapI GCTCTTC 1 cut(s) 192
SaqAI TTAA 2 cut(s) 105, 720
SatI GCNGC 5 cut(s) 9, 48, 150, 608, 611
Sau3AI GATC 4 cut(s) 220, 379, 499, 739
Sau96I GGNCC 3 cut(s) 160, 690, 691
SchI GAGTC 2 cut(s) 83, 560
ScrFI CCNGG 1 cut(s) 311
SduI GDGCHC 3 cut(s) 170, 204, 694
SetI ASST 6 cut(s) 21, 196, 244, 253, 291, 688
SfaNI GCATC 1 cut(s) 531
SinI GGWCC 1 cut(s) 160
SmiMI CAYNNNNRTG 1 cut(s) 35
Sse9I AATT 3 cut(s) 265, 275, 638
SsiI CCGC 9 cut(s) 47, 63, 76, 140, 150, 158, 188, 256, 341
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 1 cut(s) 309
TaqI TCGA 5 cut(s) 14, 219, 234, 281, 742
TasI AATT 3 cut(s) 265, 275, 638
TauI GCSGC 2 cut(s) 50, 152
Tru1I TTAA 2 cut(s) 105, 720
Tru9I TTAA 2 cut(s) 105, 720
TscAI CASTG 1 cut(s) 334
TseI GCWGC 3 cut(s) 8, 607, 610
TspDTI ATGAA 6 cut(s) 15, 486, 506, 519, 651, 711
TspGWI ACGGA 1 cut(s) 99
TspRI CASTG 1 cut(s) 334
VpaK11BI GGWCC 1 cut(s) 160
XbaI TCTAGA 1 cut(s) 736
XceI RCATGY 1 cut(s) 479
XspI CTAG 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.