Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0003021

Physical Location & Seq

Genomic Coordinates Reverse (-)

8991789 .. 8998186

Gene Structure 6398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3879 bp

ATGGAAGTGCTCCCTTGTTCTACCATTCGTGTTGGACAATCTGATTGCCCTCAACAGAGTTCATCAACCCCTTCTGTCTATGACGGTGAATCCAACTGCCTTGAACATGAAAAGAAAGTGCAAGCGGCAGATGACATATTGCCAAATGTGGAAGGACCTCAATTAGGAAGACAAGGTGAAGTTCAAGAGGCAGTTGATGAATTGCATACTTCTGAAGGATGTCAAAATGGAGCTTCAGTTATTGATTGTTGTCAATTGGAGGGTCAAAAGTCATCTAGTGGCTCGCAAGATTTTGATGATGATGACGTAAATGCACAGAATTACAGTGAACCCTGCGTAACCTCTGATAACAGTCATATGATTGTAGACAGCAGGGAAAGTGCTTTGCCAAACAACAGTAGGGGAGAGTCATCTCTGTCAGAGTCTGCATGGCTAGAAAGTGATGAATCTGTGGCACTGTGGGTCAAGTGGAGAGGGAAGTGGCAGACAGGACTACGGTGTGCAAGAGCTGACTGCCCATTATCGACTTTGAGAGCAAAACCAACTCATGATAGGAAAAAATATTTTGTGATATTTTTTCCACACACAAGGAATTATTCTTGGGCAGACACACTGCTTGTTCGTTCCATCGATGAATTTCCACACCCTATTGCATATAAAACGCACAAAGTTGGCTTAAAAGTGGTTAAAGATTTGACCATAGCACGTCGGTTTATTATGCAAAAGTTAGCTGTTGGAATGCTGAATATTGTTGACCAATTTCATACTGAGGCTTTGATAGAGACTGCTCGTGATGTGGCTGTCTGGAAGGAATTTGCTATGGAGGCTTCTCGTTGCAGTGGCTATTCTGATCTTGGAAAGATGCTTCTGAAGCTGCAAAGTATGATATCACAGACCTACCTAAATTCTGAATGGCTAGAACGTTCATATAACTTTTGGGTGCAGCAGTGTCAGAATGCGAGTAATGCTGCAACCATTGAAGTACTTAAGGAGGAACTAGTTGACTCTATTCTCTGGAATGAAGTCCAGTCTCTCCAGAATGCACCATTGCAGCCTACATTGGGTTCCGAGTGGAAAACATGGAAGCATGAAGTTATGAAATGTTTTTCAACCTCTCATCCCACATCGAATAGTGTCGACTTTCAACAGCAGACTAGTGATGGTCCCTTAACCCCAAATCTCCAAGTTGGCTGGAAAAGGCCAAAGCTCGAAGTTCGTCGTGCGGAGGCAAATGCTTCCCAGGTGGAATCTAGGGGATCAGTTGAATCTATAGCTATTGAAATTGACTCTGAATTCTTTAATAATCGAGACACTTCAAATGCTGCTACATTAGCATCAGAACCCTATAAAAAAGAAGATATGAAAGATATAGCTGCACCAGAAGACACACCTGGGCGAGTTGCTGATAAATGGGATGGAGTATTAGTTGAAGCTGGTAATTCTAAGTTCATCCAAACCAAAGATGTGGAAATGACACCAGCCAATGAAGTTGCTGCCATAAGATCTTCTGTGCCTGGAAGTAAAAATCGACAGTGCATTGCTTATATTGAAGCCAAGGGAAGGCAATGCGTGAGGTGGGCAAATGATGGTGATGTTTACTGTTGTGTACATTTGTCCTCTCGTTTCATGGGAAGCTCTACCAAAGCTGAAGGGTCTCACTCTAGTGATCAACCACTGTGTGAAGGCACAACTGTCCTTGGAACTAGATGTAAGCATCGGTCTTTACAAGGCTCTTCATTTTGTAAGAAGCACAGACCAAAGAATGATATGAAGACCATCTCAAATTTTCCAGAGTATACACTTAAGAGAAAGTTTGAGGAGAACATTTCTAATTTAGAGACTACAAACTGCAGAGAGATGGTATTGGTGGGAGATGTTGAAAGTCCTCTACTGGTAGATCCTGTCTCAATCGGGGCTGGTAATGCCTTCCGTGAAAGAGGGAGCTTATTTGAGAAGTCCGAGTCTCCTGCCAAAGCTTGTAATACAACAGGAGAGCAGCGCTGCATAGGGTCTTGTTTCTGGGATGACAGCAACCCTTGCTTGGAAAGTCCAAAGAGGCATTCATTATATTGCGAAAAGCACCTCCCAAGCTGGCTCAAACGTGCAAGAAATGGTAAGAGTAGGATAATATCAAAAGAAGTTTTTGTCGATCTTTTGAAAGATTGTCACTCAGAGGAGCAAAAGTTTAATTTACATCAAGCGTGTGAGCTCTTTTACAAGCTCTTTAAAAGTATATTATCTTTAAGAAACCCTGTTCCTAAGGATGTGCAATTTCAGTGGGCCCTATCTGAAGCTTCTAATAATCTTGGCGTTGGAGAAGTATTCACAAAGTTGGTTTGCTCTGAAAAGGAGAGACTTAGAAGGATTTGGGGCTTTAATGATGATGAAGATGCACATGTTGCTTCTTCTGCCATGGAAGAACAAGCTCTGTTGCAATGGACTGGGGATGACAACGAACAAGCTATTAGGTGCAAAGTTTGCTCGCAGGAGTTTTCAGATGAGCAAGCACTTGGAACTCACTGGATGGGCAATCATAAAAAGGAAGCACAATGGCTGTTTAGAGGTTATGCATGTGCTATCTGCCTGGATTGTTTTACTAATAAGAAAGTCTTGGAAACTCATGTTCAGGAGAGACATTGTGTGCAATTTGTTGAACAATGCATGCTTTTCCAGTGTATTCCTTGTGGAAGCCACTTTGGGAATACAGACGAGTTATGGTTGCATGTGCTTGCAATTCATCGTGATAATTTCAGGCTCCCAAAAGCTCCTCAGCCTGTCCTGTCTGCTGGTGATGTTTCTCCAAGGAAGTTTGAGTTATGCAATTCAGCTTCTGTGAAGAATAACACTGAGAATGTAAGCAGTCAACGAAAGTTTGTTTGCAGGTTTTGTGGGTTGAAGTTTGATTTACTTCCTGATCTTGGTCGTCACCATCAAGCTGTTCACATGGGACCAAGTTTAGCCAGTTCTCTGCCTTCAAAGAAGGGGATACGTTATTATGCTTATAGATTAAAATCTGGAAGACTTAGTCGTCCTAGATTGAGAAAAAATTTGGCAGCAGCATCATATAGGATCAGGAATAGGGCAAATGCTACAATCAAGAAACGTATTCAAGCATCAAAGTCACTTGGTACCGGAGGAATAAATGTACAGCGTCATGCAACTGAGGCAGCAAGTCTGTCTAGATTAGGGGACTCACATTGTGCAGCAGTAGCAAGAATTCTGTTTTCTGAGATGCAGAAAACAAAATGTAGGCCGAGTAACCTAGACATTTTATCTGTTGCTCGCTCTGCTTGCTGCAAGATCAGTCTCAAAGCCATGCTGGAGGGACAATATGGAGTCCTGCCAGAAAGTTTGTATCTAAGGGCAGCCAAGCTCTGCAGTGAGTATAATCTTCGGGTAGATTGGCATCAAGATGGCTTTATTTGCCCTAAAGGATGCAAAGAATTCAAGGAATGCTTTGTGTCTCCGGTGATGCCTCTTCCAATTGGTACTGTGGGGCATAGATCTCCACCTTCATCAGGTCCTCGTGATGATAAGTGGGAGGTGGATGAGAGCCACTATCTTATTGATGCACATCACTTGAGCCAAAGATCCTTCCAGAAGGCTCTTGTCTTGTGTGATGATATAAGCTTTGGACAGGAATTGGTCCCGGTGGTTTGTGTAGCAGATGAAGACCAATTGGATTCTTATCCTGCCCTTGCAGGTGGTTCTAATGACCAAAATGCTGGTCATTCCTTGCCTTGGGAGAGCTTTACCTATATTATGAAGCCCTTGCTTCATCAATCCCCGGGACTCGATAGAGAGAGTTTGCAATTGGGGTGTGCATGCCCGCGTTCTACATGCTGTCCTGAAACATGTGATCGATGTATACCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0003824 GO:0005488 GO:0006325 GO:0006338 GO:0006342 GO:0006355 GO:0006464 GO:0006479 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008757 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016278 GO:0016279 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031399 GO:0032259 GO:0032268 GO:0033043 GO:0033044 GO:0034968 GO:0036211 GO:0040029 GO:0042054 GO:0043170 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051128 GO:0051171 GO:0051172 GO:0051246 GO:0051252 GO:0051253 GO:0051276 GO:0051570 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:0140110 GO:1900109 GO:1901363 GO:1901564 GO:1902275 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SET zf-TRM13_CCCH

Protein Analysis

1293

Amino Acids

144.82

Weight (kDa)

6.58

Isoelectric Point (pI)

45.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_3rep	PF18868	858 - 982	4.1e-64	Zinc finger C2H2-type, 3 repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740 AT2G23740
fragaria_vesca	FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350 FvH4_1g14350
malus_domestica	MD02G1157000.v1.1 MD15G1271600.v1.1
prunus_persica	Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1 Prupe.7G146600_v2.0.a1
pyrus_communis	pycom02g12410 pycom15g23560
rosa_chinensis	RchiOBHm_Chr2g0103021
rosa_laevigata	RLG00000017201
rosa_multiflora	Rmu_sc0000388.1_g000017
rosa_roxburghii	Rroxscaffold_2G00139990
rosa_rugosa	Rorug02G0111400 Rorug02G0111400 Rorug02G0111500 Rorug02G0111500
rosa_samantha	Rh2AG159700 Rh2BG166200 Rh2CG166400 Rh2DG165100
rosa_wichuraiana	Rw2G012480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	3692
AasI	GACNNNNNNGTC	1 cut(s)	3027
Acc36I	ACCTGC	2 cut(s)	2871, 3692
Acc65I	GGTACC	1 cut(s)	3128
AccB1I	GGYRCC	1 cut(s)	3128
AccI	GTMKAC	4 cut(s)	366, 1137, 1796, 3868
AccII	CGCG	1 cut(s)	3832
AciI	CCGC	3 cut(s)	125, 1223, 3830
AclI	AACGTT	1 cut(s)	922
AclWI	GGATC	4 cut(s)	1264, 1892, 3077, 3585
AcsI	RAATTY	8 cut(s)	635, 812, 904, 1292, 1783, 3046, 3216, 3443
AcuI	CTGAAG	5 cut(s)	219, 234, 890, 1668, 2310
AdeI	CACNNNGTG	2 cut(s)	1679, 3200
AfaI	GTAC	5 cut(s)	984, 1608, 3130, 3147, 3490
AfeI	AGCGCT	1 cut(s)	2000
AfiI	CCNNNNNNNGG	7 cut(s)	164, 1061, 1560, 2041, 2918, 3518, 3741
AflII	CTTAAG	2 cut(s)	986, 1802
AflIII	ACRYGT	2 cut(s)	2395, 3854
AhlI	ACTAGT	2 cut(s)	997, 1154
AjiI	CACGTC	1 cut(s)	707
AjnI	CCWGG	4 cut(s)	1239, 1390, 1513, 2583
AjuI	GAANNNNNNNTTGG	2 cut(s)	2044, 2076
AleI	CACNNNNGTG	1 cut(s)	1662
Alw21I	GWGCWC	2 cut(s)	12, 2211
AlwI	GGATC	4 cut(s)	1264, 1892, 3077, 3585
AlwNI	CAGNNNCTG	2 cut(s)	425, 2831
Ama87I	CYCGRG	1 cut(s)	3787
Aor51HI	AGCGCT	1 cut(s)	2000
AoxI	GGCC	3 cut(s)	1199, 2280, 3251
ApaI	GGGCCC	1 cut(s)	2284
ApoI	RAATTY	8 cut(s)	635, 812, 904, 1292, 1783, 3046, 3216, 3443
ArsI	GACNNNNNNTTYG	2 cut(s)	3712, 3744
Asp718I	GGTACC	1 cut(s)	3128
AspLEI	GCGC	1 cut(s)	2001
AspS9I	GGNCC	7 cut(s)	155, 1163, 2280, 2281, 2948, 3521, 3646
AsuC2I	CCSGG	3 cut(s)	3650, 3788, 3789
AsuHPI	GGTGA	6 cut(s)	98, 188, 1601, 2801, 2918, 3481
AvaI	CYCGRG	1 cut(s)	3787
AvaII	GGWCC	5 cut(s)	155, 1163, 2948, 3521, 3646
AxyI	CCTNAGG	1 cut(s)	2259
BaeGI	GKGCMC	1 cut(s)	2284
BanI	GGYRCC	1 cut(s)	3128
BanII	GRGCYC	2 cut(s)	2211, 2284
BauI	CACGAG	2 cut(s)	789, 3525
BbsI	GAAGAC	5 cut(s)	175, 1389, 1778, 3025, 3678
Bbv12I	GWGCWC	2 cut(s)	12, 2211
BbvCI	CCTCAGC	1 cut(s)	2769
BccI	CCATC	9 cut(s)	635, 1154, 1409, 1580, 1784, 1852, 2518, 2937, 3407
BcgI	CGANNNNNNTGC	2 cut(s)	1949, 1983
BciT130I	CCWGG	4 cut(s)	1241, 1392, 1515, 2585
BciVI	GTATCC	1 cut(s)	2979
BclI	TGATCA	1 cut(s)	1666
BcnI	CCSGG	3 cut(s)	3650, 3788, 3789
BcuI	ACTAGT	2 cut(s)	997, 1154
BfmI	CTRYAG	3 cut(s)	1269, 1849, 3376
BfoI	RGCGCY	1 cut(s)	2002
BfrI	CTTAAG	2 cut(s)	986, 1802
BfuAI	ACCTGC	2 cut(s)	2871, 3692
BfuI	GTATCC	1 cut(s)	2979
BglII	AGATCT	2 cut(s)	1502, 3503
BmcAI	AGTACT	1 cut(s)	984
Bme1390I	CCNGG	7 cut(s)	1241, 1392, 1515, 2585, 3650, 3788, 3789
Bme18I	GGWCC	5 cut(s)	155, 1163, 2948, 3521, 3646
BmeT110I	CYCGRG	1 cut(s)	3787
BmgBI	CACGTC	1 cut(s)	707
BmgT120I	GGNCC	7 cut(s)	155, 1163, 2280, 2281, 2948, 3521, 3646
BmiI	GGNNCC	7 cut(s)	1066, 1165, 2282, 2756, 2949, 3130, 3648
BmrFI	CCNGG	7 cut(s)	1241, 1392, 1515, 2585, 3650, 3788, 3789
BmrI	ACTGGG	1 cut(s)	2451
BmuI	ACTGGG	1 cut(s)	2451
BpiI	GAAGAC	5 cut(s)	175, 1389, 1778, 3025, 3678
BpmI	CTGGAG	2 cut(s)	1019, 3341
Bpu10I	CCTNAGC	1 cut(s)	2769
BpuEI	CTTGAG	1 cut(s)	3601
BpuMI	CCSGG	3 cut(s)	3650, 3788, 3789
Bsa29I	ATCGAT	2 cut(s)	630, 3862
BsaBI	GATNNNNATC	4 cut(s)	3010, 3405, 3573, 3687
BsaI	GGTCTC	1 cut(s)	1659
BsaJI	CCNNGG	9 cut(s)	1239, 1391, 1554, 1696, 2412, 2801, 3740, 3786, 3787
BsaWI	WCCGGW	2 cut(s)	3131, 3466
BsaXI	ACNNNNNCTCC	6 cut(s)	222, 252, 1410, 1440, 2168, 2198
Bsc4I	CCNNNNNNNGG	7 cut(s)	164, 1061, 1560, 2041, 2918, 3518, 3741
Bse1I	ACTGG	6 cut(s)	1027, 1896, 2446, 2525, 2671, 2961
Bse21I	CCTNAGG	1 cut(s)	2259
Bse3DI	GCAATG	4 cut(s)	1046, 1536, 1571, 2441
Bse8I	GATNNNNATC	4 cut(s)	3010, 3405, 3573, 3687
BseBI	CCWGG	4 cut(s)	1241, 1392, 1515, 2585
BseCI	ATCGAT	2 cut(s)	630, 3862
BseDI	CCNNGG	9 cut(s)	1239, 1391, 1554, 1696, 2412, 2801, 3740, 3786, 3787
BseJI	GATNNNNATC	4 cut(s)	3010, 3405, 3573, 3687
BseLI	CCNNNNNNNGG	7 cut(s)	164, 1061, 1560, 2041, 2918, 3518, 3741
BseMI	GCAATG	4 cut(s)	1046, 1536, 1571, 2441
BseMII	CTCAG	6 cut(s)	759, 2184, 2783, 2838, 3153, 3219
BseNI	ACTGG	6 cut(s)	1027, 1896, 2446, 2525, 2671, 2961
BseRI	GAGGAG	3 cut(s)	1832, 2189, 2757
BseSI	GKGCMC	1 cut(s)	2284
BsgI	GTGCAG	3 cut(s)	962, 1359, 3222
Bsh1236I	CGCG	1 cut(s)	3832
BshFI	GGCC	3 cut(s)	1201, 2282, 3253
BshNI	GGYRCC	1 cut(s)	3128
BshVI	ATCGAT	2 cut(s)	630, 3862
BsiHKAI	GWGCWC	2 cut(s)	12, 2211
BsiHKCI	CYCGRG	1 cut(s)	3787
BsiSI	CCGG	4 cut(s)	3132, 3467, 3650, 3788
BslFI	GGGAC	6 cut(s)	1149, 2961, 3203, 3339, 3632, 3804
BslI	CCNNNNNNNGG	7 cut(s)	164, 1061, 1560, 2041, 2918, 3518, 3741
BsmFI	GGGAC	6 cut(s)	1149, 2961, 3203, 3339, 3632, 3804
BsmI	GAATGC	5 cut(s)	744, 961, 1045, 2059, 3458
BsnI	GGCC	3 cut(s)	1201, 2282, 3253
Bso31I	GGTCTC	1 cut(s)	1659
BsoBI	CYCGRG	1 cut(s)	3787
Bsp120I	GGGCCC	1 cut(s)	2280
Bsp1286I	GDGCHC	3 cut(s)	12, 2211, 2284
Bsp1407I	TGTACA	2 cut(s)	1606, 3145
Bsp19I	CCATGG	1 cut(s)	2412
BspACI	CCGC	3 cut(s)	125, 1223, 3830
BspANI	GGCC	3 cut(s)	1201, 2282, 3253
BspCNI	CTCAG	6 cut(s)	760, 2183, 2782, 2839, 3154, 3220
BspDI	ATCGAT	2 cut(s)	630, 3862
BspFNI	CGCG	1 cut(s)	3832
BspHI	TCATGA	1 cut(s)	547
BspLI	GGNNCC	7 cut(s)	1066, 1165, 2282, 2756, 2949, 3130, 3648
BspMAI	CTGCAG	2 cut(s)	1853, 3380
BspMI	ACCTGC	2 cut(s)	2871, 3692
BspPI	GGATC	4 cut(s)	1264, 1892, 3077, 3585
BspQI	GCTCTTC	1 cut(s)	1738
BspT107I	GGYRCC	1 cut(s)	3128
BspTI	CTTAAG	2 cut(s)	986, 1802
BspTNI	GGTCTC	1 cut(s)	1659
BsrDI	GCAATG	4 cut(s)	1046, 1536, 1571, 2441
BsrGI	TGTACA	2 cut(s)	1606, 3145
BsrI	ACTGG	6 cut(s)	1027, 1896, 2446, 2525, 2671, 2961
BssECI	CCNNGG	9 cut(s)	1239, 1391, 1554, 1696, 2412, 2801, 3740, 3786, 3787
BssNAI	GTATAC	2 cut(s)	1797, 3869
BssSI	CACGAG	2 cut(s)	789, 3525
BssT1I	CCWWGG	5 cut(s)	1554, 1696, 2412, 2801, 3740
Bst1107I	GTATAC	2 cut(s)	1797, 3869
Bst2BI	CACGAG	2 cut(s)	789, 3525
Bst2UI	CCWGG	4 cut(s)	1241, 1392, 1515, 2585
Bst6I	CTCTTC	2 cut(s)	1738, 3483
BstAFI	CTTAAG	2 cut(s)	986, 1802
BstAPI	GCANNNNNTGC	3 cut(s)	2037, 2399, 2478
BstAUI	TGTACA	2 cut(s)	1606, 3145
BstDSI	CCRYGG	1 cut(s)	2412
BstENI	CCTNNNNNAGG	2 cut(s)	162, 3516
BstFNI	CGCG	1 cut(s)	3832
BstH2I	RGCGCY	1 cut(s)	2002
BstHHI	GCGC	1 cut(s)	2001
BstNI	CCWGG	4 cut(s)	1241, 1392, 1515, 2585
BstNSI	RCATGY	7 cut(s)	2399, 2574, 2665, 2726, 3828, 3843, 3858
BstSCI	CCNGG	7 cut(s)	1239, 1390, 1513, 2583, 3648, 3786, 3787
BstSFI	CTRYAG	3 cut(s)	1269, 1849, 3376
BstSLI	GKGCMC	1 cut(s)	2284
BstUI	CGCG	1 cut(s)	3832
BstV2I	GAAGAC	5 cut(s)	175, 1389, 1778, 3025, 3678
BstX2I	RGATCY	4 cut(s)	1502, 1897, 3503, 3590
BstXI	CCANNNNNNTGG	2 cut(s)	1465, 3725
BstYI	RGATCY	4 cut(s)	1502, 1897, 3503, 3590
BstZ17I	GTATAC	2 cut(s)	1797, 3869
Bsu15I	ATCGAT	2 cut(s)	630, 3862
Bsu36I	CCTNAGG	1 cut(s)	2259
BsuI	GTATCC	1 cut(s)	2979
BsuRI	GGCC	3 cut(s)	1201, 2282, 3253
BsuTUI	ATCGAT	2 cut(s)	630, 3862
BtgI	CCRYGG	1 cut(s)	2412
BtrI	CACGTC	1 cut(s)	707
BtsI	GCAGTG	4 cut(s)	611, 844, 953, 3385
BveI	ACCTGC	2 cut(s)	2871, 3692
CaiI	CAGNNNCTG	2 cut(s)	425, 2831
CciI	TCATGA	1 cut(s)	547
CfoI	GCGC	1 cut(s)	2001
Cfr13I	GGNCC	7 cut(s)	155, 1163, 2280, 2281, 2948, 3521, 3646
Cfr9I	CCCGGG	1 cut(s)	3787
ClaI	ATCGAT	2 cut(s)	630, 3862
CseI	GACGC	1 cut(s)	3140
Csp6I	GTAC	5 cut(s)	983, 1607, 3129, 3146, 3489
CspCI	CAANNNNNGTGG	2 cut(s)	2258, 2293
CviQI	GTAC	5 cut(s)	983, 1607, 3129, 3146, 3489
DraI	TTTAAA	1 cut(s)	2227
DraIII	CACNNNGTG	2 cut(s)	1679, 3200
DrdI	GACNNNNNNGTC	1 cut(s)	3027
DseDI	GACNNNNNNGTC	1 cut(s)	3027
Eam1104I	CTCTTC	2 cut(s)	1738, 3483
EarI	CTCTTC	2 cut(s)	1738, 3483
Ecl136II	GAGCTC	1 cut(s)	2209
Eco130I	CCWWGG	5 cut(s)	1554, 1696, 2412, 2801, 3740
Eco24I	GRGCYC	2 cut(s)	2211, 2284
Eco31I	GGTCTC	1 cut(s)	1659
Eco32I	GATATC	1 cut(s)	888
Eco47I	GGWCC	5 cut(s)	155, 1163, 2948, 3521, 3646
Eco47III	AGCGCT	1 cut(s)	2000
Eco53kI	GAGCTC	1 cut(s)	2209
Eco57I	CTGAAG	5 cut(s)	219, 234, 890, 1668, 2310
Eco81I	CCTNAGG	1 cut(s)	2259
Eco88I	CYCGRG	1 cut(s)	3787
EcoICRI	GAGCTC	1 cut(s)	2209
EcoNI	CCTNNNNNAGG	2 cut(s)	162, 3516
EcoO109I	RGGNCCY	3 cut(s)	155, 2281, 3521
EcoRI	GAATTC	3 cut(s)	1292, 3216, 3443
EcoRII	CCWGG	4 cut(s)	1239, 1390, 1513, 2583
EcoRV	GATATC	1 cut(s)	888
EcoT14I	CCWWGG	5 cut(s)	1554, 1696, 2412, 2801, 3740
EcoT22I	ATGCAT	2 cut(s)	2572, 2663
EcoT38I	GRGCYC	2 cut(s)	2211, 2284
ErhI	CCWWGG	5 cut(s)	1554, 1696, 2412, 2801, 3740
FalI	AAGNNNNNCTT	4 cut(s)	2594, 2626, 3440, 3472
FaqI	GGGAC	6 cut(s)	1149, 2961, 3203, 3339, 3632, 3804
FauI	CCCGC	1 cut(s)	3837
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	1 cut(s)	1666
FblI	GTMKAC	4 cut(s)	366, 1137, 1796, 3868
FriOI	GRGCYC	2 cut(s)	2211, 2284
GlaI	GCGC	1 cut(s)	2000
GsuI	CTGGAG	2 cut(s)	1019, 3341
HaeII	RGCGCY	1 cut(s)	2002
HaeIII	GGCC	3 cut(s)	1201, 2282, 3253
HapII	CCGG	4 cut(s)	3132, 3467, 3650, 3788
HgaI	GACGC	1 cut(s)	3140
HhaI	GCGC	1 cut(s)	2001
Hin6I	GCGC	1 cut(s)	1999
HinP1I	GCGC	1 cut(s)	1999
HincII	GTYRAC	4 cut(s)	754, 1003, 1138, 2864
HindII	GTYRAC	4 cut(s)	754, 1003, 1138, 2864
HindIII	AAGCTT	3 cut(s)	1974, 2292, 3628
HpaII	CCGG	4 cut(s)	3132, 3467, 3650, 3788
HphI	GGTGA	6 cut(s)	98, 188, 1601, 2801, 2918, 3481
Hpy99I	CGWCG	2 cut(s)	711, 1221
HpyCH4IV	ACGT	6 cut(s)	306, 706, 922, 2101, 2989, 3103
HpySE526I	ACGT	6 cut(s)	306, 706, 922, 2101, 2989, 3103
HspAI	GCGC	1 cut(s)	1999
KpnI	GGTACC	1 cut(s)	3132
Ksp22I	TGATCA	1 cut(s)	1666
LguI	GCTCTTC	1 cut(s)	1738
LmnI	GCTCC	6 cut(s)	15, 230, 1941, 2176, 2760, 2770
MaeII	ACGT	6 cut(s)	306, 706, 922, 2101, 2989, 3103
MaeIII	GTNAC	5 cut(s)	337, 2165, 2924, 3120, 3257
MfeI	CAATTG	4 cut(s)	254, 3483, 3677, 3812
MflI	RGATCY	4 cut(s)	1502, 1897, 3503, 3590
MhlI	GDGCHC	3 cut(s)	12, 2211, 2284
MlyI	GAGTC	8 cut(s)	416, 431, 998, 1280, 1970, 3185, 3345, 3786
MmeI	TCCRAC	4 cut(s)	13, 117, 715, 2293
Mph1103I	ATGCAT	2 cut(s)	2572, 2663
MslI	CAYNNNNRTG	2 cut(s)	1662, 3411
MspCI	CTTAAG	2 cut(s)	986, 1802
MspI	CCGG	4 cut(s)	3132, 3467, 3650, 3788
MspR9I	CCNGG	7 cut(s)	1241, 1392, 1515, 2585, 3650, 3788, 3789
MunI	CAATTG	4 cut(s)	254, 3483, 3677, 3812
Mva1269I	GAATGC	5 cut(s)	744, 961, 1045, 2059, 3458
MvaI	CCWGG	4 cut(s)	1241, 1392, 1515, 2585
MvnI	CGCG	1 cut(s)	3832
NciI	CCSGG	3 cut(s)	3650, 3788, 3789
NcoI	CCATGG	1 cut(s)	2412
NdeI	CATATG	1 cut(s)	357
NlaIV	GGNNCC	7 cut(s)	1066, 1165, 2282, 2756, 2949, 3130, 3648
NmeAIII	GCCGAG	1 cut(s)	3279
NmuCI	GTSAC	3 cut(s)	2165, 2924, 3120
NsiI	ATGCAT	2 cut(s)	2572, 2663
NspI	RCATGY	7 cut(s)	2399, 2574, 2665, 2726, 3828, 3843, 3858
OliI	CACNNNNGTG	1 cut(s)	1662
PaeI	GCATGC	2 cut(s)	2665, 3828
PagI	TCATGA	1 cut(s)	547
PaqCI	CACCTGC	1 cut(s)	3692
PciI	ACATGT	2 cut(s)	2395, 3854
PciSI	GCTCTTC	1 cut(s)	1738
PctI	GAATGC	5 cut(s)	744, 961, 1045, 2059, 3458
PfeI	GAWTC	5 cut(s)	89, 446, 1247, 1265, 3683
PflFI	GACNNNGTC	1 cut(s)	3024
PleI	GAGTC	8 cut(s)	415, 430, 998, 1280, 1969, 3185, 3344, 3786
PpsI	GAGTC	8 cut(s)	415, 430, 998, 1280, 1969, 3185, 3344, 3786
PpuMI	RGGWCCY	2 cut(s)	155, 3521
PscI	ACATGT	2 cut(s)	2395, 3854
Psp124BI	GAGCTC	1 cut(s)	2211
Psp1406I	AACGTT	1 cut(s)	922
Psp5II	RGGWCCY	2 cut(s)	155, 3521
Psp6I	CCWGG	4 cut(s)	1239, 1390, 1513, 2583
PspGI	CCWGG	4 cut(s)	1239, 1390, 1513, 2583
PspN4I	GGNNCC	7 cut(s)	1066, 1165, 2282, 2756, 2949, 3130, 3648
PspOMI	GGGCCC	1 cut(s)	2280
PspPI	GGNCC	7 cut(s)	155, 1163, 2280, 2281, 2948, 3521, 3646
PspPPI	RGGWCCY	2 cut(s)	155, 3521
PstI	CTGCAG	2 cut(s)	1853, 3380
PstNI	CAGNNNCTG	2 cut(s)	425, 2831
PsuI	RGATCY	4 cut(s)	1502, 1897, 3503, 3590
PsyI	GACNNNGTC	1 cut(s)	3024
RsaI	GTAC	5 cut(s)	984, 1608, 3130, 3147, 3490
RsaNI	GTAC	5 cut(s)	983, 1607, 3129, 3146, 3489
RseI	CAYNNNNRTG	2 cut(s)	1662, 3411
SacI	GAGCTC	1 cut(s)	2211
SalI	GTCGAC	1 cut(s)	1136
SapI	GCTCTTC	1 cut(s)	1738
Sau96I	GGNCC	7 cut(s)	155, 1163, 2280, 2281, 2948, 3521, 3646
ScaI	AGTACT	1 cut(s)	984
SchI	GAGTC	8 cut(s)	416, 431, 998, 1280, 1970, 3185, 3345, 3786
ScrFI	CCNGG	7 cut(s)	1241, 1392, 1515, 2585, 3650, 3788, 3789
SduI	GDGCHC	3 cut(s)	12, 2211, 2284
SfcI	CTRYAG	3 cut(s)	1269, 1849, 3376
SinI	GGWCC	5 cut(s)	155, 1163, 2948, 3521, 3646
SmaI	CCCGGG	1 cut(s)	3789
SmiMI	CAYNNNNRTG	2 cut(s)	1662, 3411
SmlI	CTYRAG	3 cut(s)	986, 1802, 3580
SmoI	CTYRAG	3 cut(s)	986, 1802, 3580
SpeI	ACTAGT	2 cut(s)	997, 1154
SphI	GCATGC	2 cut(s)	2665, 3828
SsiI	CCGC	3 cut(s)	125, 1223, 3830
SspI	AATATT	2 cut(s)	563, 748
SstI	GAGCTC	1 cut(s)	2211
StyD4I	CCNGG	7 cut(s)	1239, 1390, 1513, 2583, 3648, 3786, 3787
StyI	CCWWGG	5 cut(s)	1554, 1696, 2412, 2801, 3740
TaiI	ACGT	6 cut(s)	309, 709, 925, 2104, 2992, 3106
TaqII	GACCGA	1 cut(s)	1707
TatI	WGTACW	3 cut(s)	982, 1606, 3145
TauI	GCSGC	1 cut(s)	128
TfiI	GAWTC	5 cut(s)	89, 446, 1247, 1265, 3683
TseFI	GTSAC	3 cut(s)	2165, 2924, 3120
Tsp45I	GTSAC	3 cut(s)	2165, 2924, 3120
TspGWI	ACGGA	1 cut(s)	1919
TspMI	CCCGGG	1 cut(s)	3787
Tth111I	GACNNNGTC	1 cut(s)	3024
Vha464I	CTTAAG	2 cut(s)	986, 1802
VpaK11BI	GGWCC	5 cut(s)	155, 1163, 2948, 3521, 3646
XagI	CCTNNNNNAGG	2 cut(s)	162, 3516
XapI	RAATTY	8 cut(s)	635, 812, 904, 1292, 1783, 3046, 3216, 3443
XbaI	TCTAGA	1 cut(s)	3179
XceI	RCATGY	7 cut(s)	2399, 2574, 2665, 2726, 3828, 3843, 3858
XmaI	CCCGGG	1 cut(s)	3787
XmiI	GTMKAC	4 cut(s)	366, 1137, 1796, 3868
ZrmI	AGTACT	1 cut(s)	984
Zsp2I	ATGCAT	2 cut(s)	2572, 2663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.