Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Reverse (-)

13304975 .. 13309761

Gene Structure 4787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2208 bp

ATGGCCGGCGGTGGAGGTGACGCGCCGCCTCTCCCGTCCTCTAACGGCGGCGAATTCCTCCTCTCCTTGCTCCAACAACAAAAGCCCAACCTCCTCCACCACCAGTCCCCCTCCCCACAACAACAACAACAACAGCAACCGCCTCTGGTGCTCGATCCGGCGGTCGCTGCGGTGGGACCCACACTCCCGTTCCCGCATATGCCGCCGTGGGTATCATCCAACGGCCAAGATCATCACCCTCAACTCCCCAACCCTTCTTCCCTCTGGTCCACGCAGTCCCCTCCTAATTTCAACTTCCTAGGGTTTCCCCAAAGCCCTTATCCGTCTTCCTCTCCCCCGAATCCCTTTCCCCAGTTCGCCGGAAACCAATTCCCGGGAAACCTCGAGGATTTGAGGAATCTAGTCGGCTTTCAGAGTCCAAACAATAATCCCCTCCAAAACCTTGCCCAGCTGAAGCAGCATCAAGATCAGAAGCTTAAGTTTAGTTATTTGCCTGGCGACCTTGTCCAAAACCCCGAAGGTTCAGTAAATGCCAGCATTTCCTCTGAGGTTTCGAAGCTCAGCAATAGCTTCGACAGGAATCTCAATTTGAGTTCTAACAATTCTTCCACTTCCAGTGAGTTCCGGCATGGGAATCACGATAATTTCAGTTCGAATTTCAATTCTCGGGAGCAGGAACGGCGAGGCGGAGGTGCAAGTGGAAGGGGAAAGCAGTTTCAGAGGAGTGCTCCGCCGCCAGGGTTTGGGAACAATGCGAGGGGAGGAGGGAGTTGGAATTCTGGGAATAGGAGGGAGTTTGAGCATAATGTGGATAGGGATAGGCAGAGTTCGAGTGAATTTGTGAGGAACAGGGATGTTTCTTTTGAAGATGAGAGAATGAGAAGATTGGCAAATGAAGATGGTCGAACTCAAGGCAATGGGGCTCGGGGATTGGGGTTCAATGCACAGCCTGATAAGCCTCGTCTGCCCACTGGCACCAATCTCCATTCGGCTTCTGCTTTGGAGATTGAAGAGTCGGTGATGAATTTACAACATGGAGATAAGGCGAGAAAAGACGTTGAAGATGGAAGCCAACAGTTGGTTGATGATGACAGGGATGAAAAGAATGAGGCAAAGCAACACCATAATGCGCGCGAAAAGGAGTCAAGATCAGATAACAGAGGACAACATCTACTTAGCCAAAGAACGAGGATCTTCAAAAGACAGATGCAATGTCGCATGGACATAGACAGGCTAAACGCTCCATTTCTTTCAATTTATGATTCCTTGATACCGACTGAGGAAGAGAAGGCTAAGCAGAAGCAATTGTTTACATTATTGGAGAGGTTAGTTACTAAAGAATGGCCTGAAGCTCAACTATACATCTATGGATCGTGTGGCAACTCATTTGGGGTTTCTAAAAGTGATATTGATCTCTGTCTTGCAATTGATGAGGCAAACATTAACAAGTCAGAGTTCTTATTGAGGTTGGCAGATATTTTGCAATCAGACAATCTACAGAATGTGCAGGCGTTGACACGTGCTAGGGTTCCTATCGTAAAGCTTATGGATCCTGTCACTGGAATCTCCTGTGACATATGCATCAACAATGTTTTGGCTGTCATAAATACAAAGCTTCTTCGTGATTATGCAAAAATTGATGCAAGATTACAGCAATTGGCTTTTATTGTAAAACATTGGGCCAAGTCAAGAGGAGTCAATGAAACTTACCATGGAACTTTATCAAGCTATGCGTATGTTTTGATGTGCATTCATTTCTTACAACATCGCAGACCTGCTATTCTCCCCTGCTTACAGGGAATGCAAACAACGTACTCTGTCACTGTAGAGAACGTTGAATGTTCTTTCTTTGATCAAGTAGACAAACTAAGAGATTTTGGGTCCCATAACAAGGAACCCATTGCTAGACTCGTGTGGGGATTTTTCAATTACTGGGCATATGGCCATGATTATGCAAATTCTGTTATTTCTGTTCGTACGGGAAGCTTAATCAGCAAGCGGGAAAAGGACTGGACAAGGAGGGTTGGGAATGATCGGCATTTGATATGCATAGAAGACCCTTTCGAGATATCCCACGACCTGGGTCGAGTGGTGGACAAGTACAGCATAAAAGTTCTAAGGGAGGAGTTTGAGCGTGCAGCCGACATTATGCAGTACGATGCAAATCCCTGTGTGAAGCTCTTTGAGCCCTACGTCCCTGATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

736

Amino Acids

82.78

Weight (kDa)

6.53

Isoelectric Point (pI)

54.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	417 - 544	3.5e-32	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TUTase	PF19088	426 - 526	1.7e-09	TUTase nucleotidyltransferase domain
PAP_assoc	PF03828	634 - 692	4.9e-19	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	1783
AccB1I	GGYRCC	1 cut(s)	974
AccB7I	CCANNNNNTGG	3 cut(s)	743, 1078, 2080
AccI	GTMKAC	1 cut(s)	1860
AccII	CGCG	3 cut(s)	23, 1132, 1134
AclI	AACGTT	1 cut(s)	1833
AclWI	GGATC	5 cut(s)	149, 1199, 1378, 1544, 1557
AcoI	YGGCCR	3 cut(s)	3, 223, 1942
AcsI	RAATTY	6 cut(s)	53, 655, 775, 836, 1024, 1957
AcuI	CTGAAG	2 cut(s)	473, 1368
AcvI	CACGTG	1 cut(s)	1520
AfaI	GTAC	4 cut(s)	1814, 1978, 2102, 2156
AfiI	CCNNNNNNNGG	7 cut(s)	373, 737, 743, 1078, 1559, 1891, 2080
AflII	CTTAAG	1 cut(s)	476
AflIII	ACRYGT	1 cut(s)	1517
AjnI	CCWGG	3 cut(s)	493, 736, 2079
Alw21I	GWGCWC	2 cut(s)	153, 730
AlwI	GGATC	5 cut(s)	149, 1199, 1378, 1544, 1557
Ama87I	CYCGRG	4 cut(s)	373, 383, 666, 924
AoxI	GGCC	5 cut(s)	3, 223, 1343, 1680, 1942
ApeKI	GCWGC	3 cut(s)	167, 457, 2138
ApoI	RAATTY	6 cut(s)	53, 655, 775, 836, 1024, 1957
AspA2I	CCTAGG	1 cut(s)	298
AspLEI	GCGC	3 cut(s)	25, 1132, 1134
AspS9I	GGNCC	4 cut(s)	176, 267, 1680, 1881
AsuC2I	CCSGG	2 cut(s)	374, 375
AsuHPI	GGTGA	3 cut(s)	29, 227, 1030
AsuII	TTCGAA	2 cut(s)	554, 653
AvaI	CYCGRG	4 cut(s)	373, 383, 666, 924
AvaII	GGWCC	3 cut(s)	176, 267, 1881
AvrII	CCTAGG	1 cut(s)	298
BalI	TGGCCA	1 cut(s)	1944
BamHI	GGATCC	1 cut(s)	1549
BanI	GGYRCC	1 cut(s)	974
BanII	GRGCYC	2 cut(s)	925, 2190
BauI	CACGAG	1 cut(s)	1910
BbrPI	CACGTG	1 cut(s)	1520
BbsI	GAAGAC	2 cut(s)	318, 2061
Bbv12I	GWGCWC	2 cut(s)	153, 730
BbvI	GCAGC	3 cut(s)	154, 469, 2150
BccI	CCATC	2 cut(s)	893, 1058
BceAI	ACGGC	4 cut(s)	61, 190, 238, 695
BcgI	CGANNNNNNTGC	2 cut(s)	553, 587
BciT130I	CCWGG	3 cut(s)	495, 738, 2081
BclI	TGATCA	1 cut(s)	1852
BcnI	CCSGG	2 cut(s)	374, 375
BfaI	CTAG	4 cut(s)	299, 401, 1524, 1905
BfmI	CTRYAG	2 cut(s)	1496, 1824
BfrI	CTTAAG	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	1783
BisI	GCNGC	7 cut(s)	26, 49, 168, 203, 458, 734, 2139
BlnI	CCTAGG	1 cut(s)	298
BlpI	GCTNAGC	2 cut(s)	560, 1293
BlsI	GCNGC	7 cut(s)	27, 50, 169, 204, 459, 735, 2140
Bme1390I	CCNGG	5 cut(s)	374, 375, 495, 738, 2081
Bme18I	GGWCC	3 cut(s)	176, 267, 1881
BmeT110I	CYCGRG	4 cut(s)	373, 383, 666, 924
BmgT120I	GGNCC	4 cut(s)	176, 267, 1680, 1881
BmiI	GGNNCC	8 cut(s)	177, 178, 976, 1530, 1551, 1882, 1883, 1896
BmrFI	CCNGG	5 cut(s)	374, 375, 495, 738, 2081
BmrI	ACTGGG	2 cut(s)	346, 1942
BmsI	GCATC	5 cut(s)	469, 1197, 1590, 1630, 2149
BmuI	ACTGGG	2 cut(s)	346, 1942
BoxI	GACNNNNGTC	1 cut(s)	2082
BpiI	GAAGAC	2 cut(s)	318, 2061
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
Bpu1102I	GCTNAGC	2 cut(s)	560, 1293
Bpu14I	TTCGAA	2 cut(s)	554, 653
BpuEI	CTTGAG	1 cut(s)	894
BpuMI	CCSGG	2 cut(s)	374, 375
BsaAI	YACGTR	1 cut(s)	1520
BsaBI	GATNNNNATC	2 cut(s)	1410, 2163
BsaJI	CCNNGG	6 cut(s)	206, 298, 373, 737, 1711, 2080
BsaXI	ACNNNNNCTCC	2 cut(s)	168, 198
Bsc4I	CCNNNNNNNGG	7 cut(s)	373, 737, 743, 1078, 1559, 1891, 2080
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	7 cut(s)	103, 352, 615, 976, 1564, 1937, 2015
Bse3DI	GCAATG	3 cut(s)	922, 1217, 1899
Bse8I	GATNNNNATC	2 cut(s)	1410, 2163
BseBI	CCWGG	3 cut(s)	495, 738, 2081
BseDI	CCNNGG	6 cut(s)	206, 298, 373, 737, 1711, 2080
BseGI	GGATG	3 cut(s)	215, 859, 1102
BseJI	GATNNNNATC	2 cut(s)	1410, 2163
BseLI	CCNNNNNNNGG	7 cut(s)	373, 737, 743, 1078, 1559, 1891, 2080
BseMI	GCAATG	3 cut(s)	922, 1217, 1899
BseMII	CTCAG	3 cut(s)	537, 574, 1269
BseNI	ACTGG	7 cut(s)	103, 352, 615, 976, 1564, 1937, 2015
BsePI	GCGCGC	1 cut(s)	1130
BseRI	GAGGAG	6 cut(s)	50, 83, 736, 777, 1707, 2138
BseXI	GCAGC	3 cut(s)	154, 469, 2150
BseYI	CCCAGC	1 cut(s)	447
BsgI	GTGCAG	2 cut(s)	1526, 2157
Bsh1236I	CGCG	3 cut(s)	23, 1132, 1134
Bsh1285I	CGRYCG	1 cut(s)	165
BshFI	GGCC	5 cut(s)	5, 225, 1345, 1682, 1944
BshNI	GGYRCC	1 cut(s)	974
BsiEI	CGRYCG	1 cut(s)	165
BsiHKAI	GWGCWC	2 cut(s)	153, 730
BsiHKCI	CYCGRG	4 cut(s)	373, 383, 666, 924
BsiSI	CCGG	5 cut(s)	6, 158, 360, 374, 625
BsiWI	CGTACG	1 cut(s)	1976
BslFI	GGGAC	5 cut(s)	91, 189, 262, 1867, 2180
BslI	CCNNNNNNNGG	7 cut(s)	373, 737, 743, 1078, 1559, 1891, 2080
BsmFI	GGGAC	5 cut(s)	91, 189, 262, 1867, 2180
BsmI	GAATGC	2 cut(s)	1749, 1806
BsnI	GGCC	5 cut(s)	5, 225, 1345, 1682, 1944
BsoBI	CYCGRG	4 cut(s)	373, 383, 666, 924
Bsp119I	TTCGAA	2 cut(s)	554, 653
Bsp1286I	GDGCHC	4 cut(s)	153, 730, 925, 2190
Bsp1720I	GCTNAGC	2 cut(s)	560, 1293
Bsp19I	CCATGG	1 cut(s)	1711
BspANI	GGCC	5 cut(s)	5, 225, 1345, 1682, 1944
BspCNI	CTCAG	3 cut(s)	538, 573, 1270
BspFNI	CGCG	3 cut(s)	23, 1132, 1134
BspLI	GGNNCC	8 cut(s)	177, 178, 976, 1530, 1551, 1882, 1883, 1896
BspMI	ACCTGC	1 cut(s)	1783
BspPI	GGATC	5 cut(s)	149, 1199, 1378, 1544, 1557
BspT104I	TTCGAA	2 cut(s)	554, 653
BspT107I	GGYRCC	1 cut(s)	974
BspTI	CTTAAG	1 cut(s)	476
BsrDI	GCAATG	3 cut(s)	922, 1217, 1899
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	7 cut(s)	103, 352, 615, 976, 1564, 1937, 2015
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	6 cut(s)	206, 298, 373, 737, 1711, 2080
BssHII	GCGCGC	1 cut(s)	1130
BssSI	CACGAG	1 cut(s)	1910
BssT1I	CCWWGG	2 cut(s)	298, 1711
Bst2BI	CACGAG	1 cut(s)	1910
Bst2UI	CCWGG	3 cut(s)	495, 738, 2081
Bst4CI	ACNGT	2 cut(s)	1077, 1825
Bst6I	CTCTTC	2 cut(s)	1005, 1278
BstAFI	CTTAAG	1 cut(s)	476
BstBAI	YACGTR	1 cut(s)	1520
BstBI	TTCGAA	2 cut(s)	554, 653
BstC8I	GCNNGC	6 cut(s)	7, 535, 1132, 1509, 1997, 2136
BstDEI	CTNAG	7 cut(s)	546, 560, 1175, 1278, 1293, 1868, 2117
BstDSI	CCRYGG	2 cut(s)	206, 1711
BstF5I	GGATG	3 cut(s)	215, 859, 1102
BstFNI	CGCG	3 cut(s)	23, 1132, 1134
BstHHI	GCGC	3 cut(s)	25, 1132, 1134
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	9 cut(s)	148, 167, 202, 457, 679, 955, 964, 1992, 2185
BstNI	CCWGG	3 cut(s)	495, 738, 2081
BstPAI	GACNNNNGTC	1 cut(s)	2082
BstSCI	CCNGG	5 cut(s)	372, 373, 493, 736, 2079
BstSFI	CTRYAG	2 cut(s)	1496, 1824
BstUI	CGCG	3 cut(s)	23, 1132, 1134
BstV1I	GCAGC	3 cut(s)	154, 469, 2150
BstV2I	GAAGAC	2 cut(s)	318, 2061
BstX2I	RGATCY	2 cut(s)	1191, 1549
BstYI	RGATCY	2 cut(s)	1191, 1549
BsuRI	GGCC	5 cut(s)	5, 225, 1345, 1682, 1944
BtgI	CCRYGG	2 cut(s)	206, 1711
BtgZI	GCGATG	1 cut(s)	1751
BtsCI	GGATG	3 cut(s)	215, 859, 1102
BtsIMutI	CAGTG	4 cut(s)	622, 969, 1557, 1821
BveI	ACCTGC	1 cut(s)	1783
Cac8I	GCNNGC	6 cut(s)	7, 535, 1132, 1509, 1997, 2136
CfoI	GCGC	3 cut(s)	25, 1132, 1134
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	176, 267, 1680, 1881
Cfr9I	CCCGGG	1 cut(s)	373
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	1813, 1977, 2101, 2155
CviAII	CATG	5 cut(s)	629, 1034, 1219, 1712, 1946
CviQI	GTAC	4 cut(s)	1813, 1977, 2101, 2155
DdeI	CTNAG	7 cut(s)	546, 560, 1175, 1278, 1293, 1868, 2117
EaeI	YGGCCR	3 cut(s)	3, 223, 1942
Eam1104I	CTCTTC	2 cut(s)	1005, 1278
EarI	CTCTTC	2 cut(s)	1005, 1278
EciI	GGCGGA	2 cut(s)	702, 720
Eco130I	CCWWGG	2 cut(s)	298, 1711
Eco24I	GRGCYC	2 cut(s)	925, 2190
Eco32I	GATATC	1 cut(s)	2070
Eco47I	GGWCC	3 cut(s)	176, 267, 1881
Eco57I	CTGAAG	2 cut(s)	473, 1368
Eco72I	CACGTG	1 cut(s)	1520
Eco88I	CYCGRG	4 cut(s)	373, 383, 666, 924
EcoO109I	RGGNCCY	2 cut(s)	176, 1881
EcoRI	GAATTC	2 cut(s)	53, 775
EcoRII	CCWGG	3 cut(s)	493, 736, 2079
EcoRV	GATATC	1 cut(s)	2070
EcoT14I	CCWWGG	2 cut(s)	298, 1711
EcoT22I	ATGCAT	2 cut(s)	1583, 2051
EcoT38I	GRGCYC	2 cut(s)	925, 2190
ErhI	CCWWGG	2 cut(s)	298, 1711
FaeI	CATG	5 cut(s)	632, 1037, 1222, 1715, 1949
FaqI	GGGAC	5 cut(s)	91, 189, 262, 1867, 2180
FatI	CATG	5 cut(s)	628, 1033, 1218, 1711, 1945
FauI	CCCGC	2 cut(s)	201, 1992
FauNDI	CATATG	3 cut(s)	198, 1577, 1939
FbaI	TGATCA	1 cut(s)	1852
FblI	GTMKAC	1 cut(s)	1860
Fnu4HI	GCNGC	7 cut(s)	26, 49, 168, 203, 458, 734, 2139
FokI	GGATG	3 cut(s)	202, 866, 1109
FriOI	GRGCYC	2 cut(s)	925, 2190
Fsp4HI	GCNGC	7 cut(s)	26, 49, 168, 203, 458, 734, 2139
FspBI	CTAG	4 cut(s)	299, 401, 1524, 1905
GlaI	GCGC	3 cut(s)	24, 1131, 1133
GluI	GCNGC	7 cut(s)	26, 49, 168, 203, 458, 734, 2139
GsaI	CCCAGC	1 cut(s)	451
HaeIII	GGCC	5 cut(s)	5, 225, 1345, 1682, 1944
HapII	CCGG	5 cut(s)	6, 158, 360, 374, 625
HgaI	GACGC	1 cut(s)	29
HhaI	GCGC	3 cut(s)	25, 1132, 1134
Hin1II	CATG	5 cut(s)	632, 1037, 1222, 1715, 1949
Hin6I	GCGC	3 cut(s)	23, 1130, 1132
HinP1I	GCGC	3 cut(s)	23, 1130, 1132
HincII	GTYRAC	1 cut(s)	1515
HindII	GTYRAC	1 cut(s)	1515
HindIII	AAGCTT	4 cut(s)	473, 1541, 1613, 1984
HpaII	CCGG	5 cut(s)	6, 158, 360, 374, 625
HphI	GGTGA	3 cut(s)	29, 227, 1030
Hpy166II	GTNNAC	5 cut(s)	270, 1311, 1515, 1861, 2095
Hpy188I	TCNGA	7 cut(s)	414, 471, 547, 720, 1153, 1453, 1489
Hpy188III	TCNNGA	7 cut(s)	464, 638, 668, 1146, 1622, 1689, 2065
Hpy8I	GTNNAC	5 cut(s)	270, 1311, 1515, 1861, 2095
HpyAV	CCTTC	4 cut(s)	264, 512, 696, 1282
HpyCH4III	ACNGT	2 cut(s)	1077, 1825
HpyCH4IV	ACGT	5 cut(s)	1056, 1519, 1811, 1833, 2193
HpyF10VI	GCNNNNNNNGC	9 cut(s)	148, 167, 202, 457, 679, 955, 964, 1992, 2185
HpyF3I	CTNAG	7 cut(s)	546, 560, 1175, 1278, 1293, 1868, 2117
HpySE526I	ACGT	5 cut(s)	1056, 1519, 1811, 1833, 2193
Hsp92II	CATG	5 cut(s)	632, 1037, 1222, 1715, 1949
HspAI	GCGC	3 cut(s)	23, 1130, 1132
KflI	GGGWCCC	2 cut(s)	176, 1881
KroI	GCCGGC	1 cut(s)	5
KroNI	GCCGGC	1 cut(s)	7
Ksp22I	TGATCA	1 cut(s)	1852
LmnI	GCTCC	4 cut(s)	75, 670, 733, 1246
Lsp1109I	GCAGC	3 cut(s)	154, 469, 2150
LweI	GCATC	5 cut(s)	469, 1197, 1590, 1630, 2149
MaeI	CTAG	4 cut(s)	299, 401, 1524, 1905
MaeII	ACGT	5 cut(s)	1056, 1519, 1811, 1833, 2193
MaeIII	GTNAC	5 cut(s)	17, 1330, 1555, 1571, 1819
MfeI	CAATTG	3 cut(s)	1304, 1425, 1655
MflI	RGATCY	2 cut(s)	1191, 1549
MhlI	GDGCHC	4 cut(s)	153, 730, 925, 2190
MlsI	TGGCCA	1 cut(s)	1944
MluNI	TGGCCA	1 cut(s)	1944
MlyI	GAGTC	5 cut(s)	424, 1022, 1151, 1704, 1902
MmeI	TCCRAC	3 cut(s)	97, 243, 752
Mox20I	TGGCCA	1 cut(s)	1944
Mph1103I	ATGCAT	2 cut(s)	1583, 2051
MroNI	GCCGGC	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	1944
MseI	TTAA	4 cut(s)	477, 1443, 1988, 2206
MslI	CAYNNNNRTG	2 cut(s)	1125, 1950
Msp20I	TGGCCA	1 cut(s)	1944
MspA1I	CMGCKG	1 cut(s)	451
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	5 cut(s)	6, 158, 360, 374, 625
MspR9I	CCNGG	5 cut(s)	374, 375, 495, 738, 2081
MunI	CAATTG	3 cut(s)	1304, 1425, 1655
Mva1269I	GAATGC	2 cut(s)	1749, 1806
MvaI	CCWGG	3 cut(s)	495, 738, 2081
MvnI	CGCG	3 cut(s)	23, 1132, 1134
MwoI	GCNNNNNNNGC	9 cut(s)	148, 167, 202, 457, 679, 955, 964, 1992, 2185
NaeI	GCCGGC	1 cut(s)	7
NciI	CCSGG	2 cut(s)	374, 375
NcoI	CCATGG	1 cut(s)	1711
NdeI	CATATG	3 cut(s)	198, 1577, 1939
NgoMIV	GCCGGC	1 cut(s)	5
NlaIII	CATG	5 cut(s)	632, 1037, 1222, 1715, 1949
NlaIV	GGNNCC	8 cut(s)	177, 178, 976, 1530, 1551, 1882, 1883, 1896
NmuCI	GTSAC	4 cut(s)	17, 1555, 1571, 1819
NsiI	ATGCAT	2 cut(s)	1583, 2051
NspV	TTCGAA	2 cut(s)	554, 653
PaeR7I	CTCGAG	1 cut(s)	383
PauI	GCGCGC	1 cut(s)	1130
PctI	GAATGC	2 cut(s)	1749, 1806
PdiI	GCCGGC	1 cut(s)	7
PfeI	GAWTC	6 cut(s)	340, 397, 580, 634, 1262, 1563
Pfl23II	CGTACG	1 cut(s)	1976
PflFI	GACNNNGTC	1 cut(s)	503
PflMI	CCANNNNNTGG	3 cut(s)	743, 1078, 2080
PkrI	GCNGC	7 cut(s)	27, 50, 169, 204, 459, 735, 2140
PleI	GAGTC	5 cut(s)	423, 1021, 1150, 1703, 1902
PmaCI	CACGTG	1 cut(s)	1520
PmlI	CACGTG	1 cut(s)	1520
PpsI	GAGTC	5 cut(s)	423, 1021, 1150, 1703, 1902
Ppu21I	YACGTR	1 cut(s)	1520
PpuMI	RGGWCCY	2 cut(s)	176, 1881
PshAI	GACNNNNGTC	1 cut(s)	2082
Psp1406I	AACGTT	1 cut(s)	1833
Psp5II	RGGWCCY	2 cut(s)	176, 1881
Psp6I	CCWGG	3 cut(s)	493, 736, 2079
PspCI	CACGTG	1 cut(s)	1520
PspFI	CCCAGC	1 cut(s)	447
PspGI	CCWGG	3 cut(s)	493, 736, 2079
PspLI	CGTACG	1 cut(s)	1976
PspN4I	GGNNCC	8 cut(s)	177, 178, 976, 1530, 1551, 1882, 1883, 1896
PspPI	GGNCC	4 cut(s)	176, 267, 1680, 1881
PspPPI	RGGWCCY	2 cut(s)	176, 1881
PspXI	VCTCGAGB	1 cut(s)	383
PsuI	RGATCY	2 cut(s)	1191, 1549
PsyI	GACNNNGTC	1 cut(s)	503
PteI	GCGCGC	1 cut(s)	1130
PvuII	CAGCTG	1 cut(s)	451
RsaI	GTAC	4 cut(s)	1814, 1978, 2102, 2156
RsaNI	GTAC	4 cut(s)	1813, 1977, 2101, 2155
RseI	CAYNNNNRTG	2 cut(s)	1125, 1950
SaqAI	TTAA	4 cut(s)	477, 1443, 1988, 2206
SatI	GCNGC	7 cut(s)	26, 49, 168, 203, 458, 734, 2139
Sau96I	GGNCC	4 cut(s)	176, 267, 1680, 1881
SchI	GAGTC	5 cut(s)	424, 1022, 1151, 1704, 1902
ScrFI	CCNGG	5 cut(s)	374, 375, 495, 738, 2081
SduI	GDGCHC	4 cut(s)	153, 730, 925, 2190
SfaNI	GCATC	5 cut(s)	469, 1197, 1590, 1630, 2149
SfcI	CTRYAG	2 cut(s)	1496, 1824
Sfr274I	CTCGAG	1 cut(s)	383
SfuI	TTCGAA	2 cut(s)	554, 653
SinI	GGWCC	3 cut(s)	176, 267, 1881
SlaI	CTCGAG	1 cut(s)	383
SmaI	CCCGGG	1 cut(s)	375
SmiMI	CAYNNNNRTG	2 cut(s)	1125, 1950
SmlI	CTYRAG	3 cut(s)	383, 476, 909
SmoI	CTYRAG	3 cut(s)	383, 476, 909
SspMI	CTAG	4 cut(s)	299, 401, 1524, 1905
StyD4I	CCNGG	5 cut(s)	372, 373, 493, 736, 2079
StyI	CCWWGG	2 cut(s)	298, 1711
TaaI	ACNGT	2 cut(s)	1077, 1825
TaiI	ACGT	5 cut(s)	1059, 1522, 1814, 1836, 2196
TaqI	TCGA	9 cut(s)	153, 384, 554, 573, 653, 830, 904, 2064, 2086
TatI	WGTACW	1 cut(s)	2100
TauI	GCSGC	4 cut(s)	28, 51, 205, 736
TfiI	GAWTC	6 cut(s)	340, 397, 580, 634, 1262, 1563
Tru1I	TTAA	4 cut(s)	477, 1443, 1988, 2206
Tru9I	TTAA	4 cut(s)	477, 1443, 1988, 2206
TscAI	CASTG	4 cut(s)	622, 976, 1564, 1828
TseFI	GTSAC	4 cut(s)	17, 1555, 1571, 1819
TseI	GCWGC	3 cut(s)	167, 457, 2138
Tsp45I	GTSAC	4 cut(s)	17, 1555, 1571, 1819
TspDTI	ATGAA	5 cut(s)	909, 1037, 1113, 1716, 1742
TspGWI	ACGGA	1 cut(s)	312
TspMI	CCCGGG	1 cut(s)	373
TspRI	CASTG	4 cut(s)	622, 976, 1564, 1828
Tth111I	GACNNNGTC	1 cut(s)	503
Van91I	CCANNNNNTGG	3 cut(s)	743, 1078, 2080
Vha464I	CTTAAG	1 cut(s)	476
VpaK11BI	GGWCC	3 cut(s)	176, 267, 1881
XapI	RAATTY	6 cut(s)	53, 655, 775, 836, 1024, 1957
XhoI	CTCGAG	1 cut(s)	383
XmaI	CCCGGG	1 cut(s)	373
XmaJI	CCTAGG	1 cut(s)	298
XmiI	GTMKAC	1 cut(s)	1860
XspI	CTAG	4 cut(s)	299, 401, 1524, 1905
Zsp2I	ATGCAT	2 cut(s)	1583, 2051

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.