Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Forward (+)

31220116 .. 31221414

Gene Structure 1299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGACTTCACAAATGAATGGAACTAGTGTTCACGTTGAGCGCACTGAACCAGAACCAGTCTTGGACGAGTGGTGTATCTACAGGGTTCCCAGCAAACTCCGCAATGTAAATAAAGCTTCATACACTCCTCAATTACTTTCGATAGGCCCTTTCCACTATGGTAGTCCAAAACTGAAGGACATGGAAAGCCATAAACAGAAATATTATGAGAAATTTCTCAAACGCTGTTCAAAGGATGAGGCTACACTGAAACGGTTCGTCAACCGACATTCGAACAGAATTCTTAGTTGTTATGCAGGTACCATCGAGTGCAGAGGCAACATTATCAACGTGATTCTAGTTGATGCTTGCTTCATCATTGAACTGTTTATGACAGAATCTGAAACAGAAAATCATCACATACTGAGGTCACCTTGGATGAGGAAAGCTCTAGAGACAGACTTAATACTGTTTGAAAATCAGATTCCTTACTATTTTCTTGAAGAGCTTTATGACTTCGCCATTTCCAGTCGTGATTCTAATGCTGAAACTAAGATGCCCGTCCATCCTGAACCTGTTCAGCATCAATTTCTTACGCTTGCCTGTAAGTTCTTTGAAGAATATAACAAGAAGAAAAGACGTCTCAGGAGTGGAGTAAACCTGAAACATTTCACTGATTTGGTAAGACATTTTGTGTGTACAGACAAAGTGGAAGATGACTGTGTTAGTAACCAAAAGAAATGTAAATATGATGTAAGAAAGCTTAAGGCAGCAGGGGTAAAGTTTACACATCTTGCAGAACCCTTTGTCATAGAGCCTTTGTCAACAAGGGTTATCAGCTATAGATCCAAGTTAGCAGGTCTTACAACTAAGGAGTTGAAGCTTACACGATTCTGGGCAACGTATGATGCAGAAAGCGTGATAAGAAATATTATGGCCTTGGAACAACTCATCTACCCAAAAAAGGCTTATATTTGCAGCTATTTTTTGCTACTTAGTCAACTTGTCAACACTGTGGAAGACATAGATTTGCTGATCAAGGACGGAGTGGTCGAGAACTTGCTAGGCAGCAACAAATCGGTGGAAAAGCTTATTAACTCATTCTGTGTGCACATTGTGGAGGAAATATCCTGCTATTCGGATATCTATGACCAGCTTAATGAACACTATGAGACGAGTTTAGGCAATCGCCGTCTAGCCACCATGAAACAAGTTTACTTCAAGGATCTTTGGACAGGCAGTGCAACTATACTTGGACTGGTTGTCCTGGTTTTCTCAATCATTGGTACCATCAAGTCGCTCACCTGTCATAAGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

432

Amino Acids

50.15

Weight (kDa)

8.62

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	26 - 418	5.4e-84	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1028
AatII	GACGTC	1 cut(s)	622
Acc36I	ACCTGC	2 cut(s)	287, 827
Acc65I	GGTACC	2 cut(s)	299, 1265
AccB1I	GGYRCC	2 cut(s)	299, 1265
AciI	CCGC	1 cut(s)	100
AclWI	GGATC	2 cut(s)	819, 1212
AcsI	RAATTY	2 cut(s)	212, 279
AcuI	CTGAAG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	619
AdeI	CACNNNGTG	1 cut(s)	1096
AfaI	GTAC	3 cut(s)	301, 679, 1267
AfiI	CCNNNNNNNGG	1 cut(s)	943
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	7 cut(s)	231, 362, 455, 482, 596, 859, 1201
AhdI	GACNNNNNGTC	1 cut(s)	1241
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	1245
AloI	GAACNNNNNNTCC	2 cut(s)	12, 44
AluBI	AGCT	9 cut(s)	116, 428, 487, 742, 819, 862, 960, 1069, 1135
AluI	AGCT	9 cut(s)	116, 428, 487, 742, 819, 862, 960, 1069, 1135
Alw21I	GWGCWC	1 cut(s)	1092
Alw26I	GTCTC	3 cut(s)	428, 626, 1145
Alw44I	GTGCAC	1 cut(s)	1088
AlwI	GGATC	2 cut(s)	819, 1212
AlwNI	CAGNNNCTG	1 cut(s)	380
AoxI	GGCC	2 cut(s)	145, 915
ApaLI	GTGCAC	1 cut(s)	1088
ApeKI	GCWGC	3 cut(s)	749, 957, 1047
ApoI	RAATTY	2 cut(s)	212, 279
Asp700I	GAANNNNTTC	3 cut(s)	254, 555, 647
Asp718I	GGTACC	2 cut(s)	299, 1265
AspLEI	GCGC	1 cut(s)	42
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	402, 1273
AsuII	TTCGAA	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	1092
BanI	GGYRCC	2 cut(s)	299, 1265
BbsI	GAAGAC	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	1092
BbvI	GCAGC	3 cut(s)	761, 969, 1059
BccI	CCATC	3 cut(s)	311, 552, 1277
BceAI	ACGGC	1 cut(s)	1155
BciT130I	CCWGG	1 cut(s)	1247
BclI	TGATCA	1 cut(s)	1014
BcoDI	GTCTC	3 cut(s)	428, 626, 1145
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	5 cut(s)	24, 338, 431, 1043, 1175
BfmI	CTRYAG	2 cut(s)	79, 820
BfrI	CTTAAG	1 cut(s)	743
BfuAI	ACCTGC	2 cut(s)	287, 827
BisI	GCNGC	3 cut(s)	750, 958, 1048
BlsI	GCNGC	3 cut(s)	751, 959, 1049
Bme1390I	CCNGG	1 cut(s)	1247
BmeRI	GACNNNNNGTC	1 cut(s)	1241
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	3 cut(s)	87, 301, 1267
BmrFI	CCNGG	1 cut(s)	1247
BmsI	GCATC	4 cut(s)	334, 525, 571, 877
BpiI	GAAGAC	1 cut(s)	1005
BplI	GAGNNNNNCTC	2 cut(s)	412, 444
Bpu14I	TTCGAA	1 cut(s)	272
BsaHI	GRCGYC	1 cut(s)	619
BsaJI	CCNNGG	2 cut(s)	413, 918
Bsc4I	CCNNNNNNNGG	1 cut(s)	943
Bse1I	ACTGG	3 cut(s)	56, 507, 1242
Bse3DI	GCAATG	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	1247
BseDI	CCNNGG	2 cut(s)	413, 918
BseGI	GGATG	3 cut(s)	241, 423, 544
BseLI	CCNNNNNNNGG	1 cut(s)	943
BseMI	GCAATG	1 cut(s)	109
BseMII	CTCAG	2 cut(s)	395, 637
BseNI	ACTGG	3 cut(s)	56, 507, 1242
BseRI	GAGGAG	1 cut(s)	117
BseSI	GKGCMC	1 cut(s)	1092
BseXI	GCAGC	3 cut(s)	761, 969, 1059
BseYI	CCCAGC	1 cut(s)	89
BsgI	GTGCAG	1 cut(s)	331
BshFI	GGCC	2 cut(s)	147, 917
BshNI	GGYRCC	2 cut(s)	299, 1265
BsiHKAI	GWGCWC	1 cut(s)	1092
BslI	CCNNNNNNNGG	1 cut(s)	943
BsmAI	GTCTC	3 cut(s)	428, 626, 1145
BsmBI	CGTCTC	2 cut(s)	626, 1145
BsnI	GGCC	2 cut(s)	147, 917
Bsp119I	TTCGAA	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	1092
Bsp1407I	TGTACA	1 cut(s)	677
Bsp143I	GATC	3 cut(s)	824, 1014, 1204
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	2 cut(s)	147, 917
BspCNI	CTCAG	2 cut(s)	396, 636
BspLI	GGNNCC	3 cut(s)	87, 301, 1267
BspMI	ACCTGC	2 cut(s)	287, 827
BspPI	GGATC	2 cut(s)	819, 1212
BspQI	GCTCTTC	1 cut(s)	477
BspT104I	TTCGAA	1 cut(s)	272
BspT107I	GGYRCC	2 cut(s)	299, 1265
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	109
BsrGI	TGTACA	1 cut(s)	677
BsrI	ACTGG	3 cut(s)	56, 507, 1242
BssECI	CCNNGG	2 cut(s)	413, 918
BssMI	GATC	3 cut(s)	824, 1014, 1204
BssNI	GRCGYC	1 cut(s)	619
BssT1I	CCWWGG	2 cut(s)	413, 918
Bst2UI	CCWGG	1 cut(s)	1247
Bst4CI	ACNGT	5 cut(s)	255, 366, 450, 701, 994
Bst6I	CTCTTC	1 cut(s)	477
BstACI	GRCGYC	1 cut(s)	619
BstAFI	CTTAAG	1 cut(s)	743
BstAUI	TGTACA	1 cut(s)	677
BstBI	TTCGAA	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	349, 579
BstDEI	CTNAG	6 cut(s)	284, 404, 531, 623, 849, 974
BstEII	GGTNACC	1 cut(s)	408
BstF5I	GGATG	3 cut(s)	241, 423, 544
BstHHI	GCGC	1 cut(s)	42
BstKTI	GATC	3 cut(s)	827, 1017, 1207
BstMAI	GTCTC	3 cut(s)	428, 626, 1145
BstMBI	GATC	3 cut(s)	824, 1014, 1204
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	1247
BstPI	GGTNACC	1 cut(s)	408
BstSCI	CCNGG	1 cut(s)	1245
BstSFI	CTRYAG	2 cut(s)	79, 820
BstSLI	GKGCMC	1 cut(s)	1092
BstV1I	GCAGC	3 cut(s)	761, 969, 1059
BstV2I	GAAGAC	1 cut(s)	1005
BstX2I	RGATCY	2 cut(s)	824, 1204
BstYI	RGATCY	2 cut(s)	824, 1204
BsuRI	GGCC	2 cut(s)	147, 917
BtsCI	GGATG	3 cut(s)	241, 423, 544
BtsI	GCAGTG	1 cut(s)	1225
BtsIMutI	CAGTG	5 cut(s)	42, 245, 651, 990, 1225
BveI	ACCTGC	2 cut(s)	287, 827
Cac8I	GCNNGC	2 cut(s)	349, 579
CaiI	CAGNNNCTG	1 cut(s)	380
CfoI	GCGC	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	300, 678, 1266
CviAII	CATG	2 cut(s)	181, 1183
CviQI	GTAC	3 cut(s)	300, 678, 1266
DdeI	CTNAG	6 cut(s)	284, 404, 531, 623, 849, 974
DpnI	GATC	3 cut(s)	826, 1016, 1206
DpnII	GATC	3 cut(s)	824, 1014, 1204
DraIII	CACNNNGTG	1 cut(s)	1096
DrdI	GACNNNNNNGTC	1 cut(s)	1028
DriI	GACNNNNNGTC	1 cut(s)	1241
DseDI	GACNNNNNNGTC	1 cut(s)	1028
Eam1104I	CTCTTC	1 cut(s)	477
Eam1105I	GACNNNNNGTC	1 cut(s)	1241
EarI	CTCTTC	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	413, 918
Eco32I	GATATC	1 cut(s)	1123
Eco57I	CTGAAG	1 cut(s)	194
Eco91I	GGTNACC	1 cut(s)	408
EcoO109I	RGGNCCY	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	408
EcoRI	GAATTC	1 cut(s)	279
EcoRII	CCWGG	1 cut(s)	1245
EcoRV	GATATC	1 cut(s)	1123
EcoT14I	CCWWGG	2 cut(s)	413, 918
ErhI	CCWWGG	2 cut(s)	413, 918
Esp3I	CGTCTC	2 cut(s)	626, 1145
FaeI	CATG	2 cut(s)	184, 1186
FatI	CATG	2 cut(s)	180, 1182
FbaI	TGATCA	1 cut(s)	1014
Fnu4HI	GCNGC	3 cut(s)	750, 958, 1048
FokI	GGATG	3 cut(s)	248, 430, 531
Fsp4HI	GCNGC	3 cut(s)	750, 958, 1048
FspBI	CTAG	5 cut(s)	24, 338, 431, 1043, 1175
GlaI	GCGC	1 cut(s)	41
GluI	GCNGC	3 cut(s)	750, 958, 1048
GsaI	CCCAGC	1 cut(s)	93
HaeIII	GGCC	2 cut(s)	147, 917
HhaI	GCGC	1 cut(s)	42
Hin1I	GRCGYC	1 cut(s)	619
Hin1II	CATG	2 cut(s)	184, 1186
Hin6I	GCGC	1 cut(s)	40
HinP1I	GCGC	1 cut(s)	40
HincII	GTYRAC	4 cut(s)	262, 804, 980, 988
HindII	GTYRAC	4 cut(s)	262, 804, 980, 988
HindIII	AAGCTT	4 cut(s)	114, 740, 860, 1067
HinfI	GANTC	5 cut(s)	334, 377, 463, 515, 870
HphI	GGTGA	2 cut(s)	402, 1273
Hpy188I	TCNGA	3 cut(s)	382, 462, 1120
Hpy188III	TCNNGA	6 cut(s)	431, 479, 512, 548, 625, 1033
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	5 cut(s)	255, 366, 450, 701, 994
HpyCH4IV	ACGT	4 cut(s)	33, 330, 619, 881
HpyCH4V	TGCA	7 cut(s)	296, 312, 776, 890, 957, 1090, 1223
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
HpyF3I	CTNAG	6 cut(s)	284, 404, 531, 623, 849, 974
HpySE526I	ACGT	4 cut(s)	33, 330, 619, 881
Hsp92I	GRCGYC	1 cut(s)	619
Hsp92II	CATG	2 cut(s)	184, 1186
HspAI	GCGC	1 cut(s)	40
KpnI	GGTACC	2 cut(s)	303, 1269
Ksp22I	TGATCA	1 cut(s)	1014
Kzo9I	GATC	3 cut(s)	824, 1014, 1204
LguI	GCTCTTC	1 cut(s)	477
Lsp1109I	GCAGC	3 cut(s)	761, 969, 1059
LweI	GCATC	4 cut(s)	334, 525, 571, 877
MaeI	CTAG	5 cut(s)	24, 338, 431, 1043, 1175
MaeII	ACGT	4 cut(s)	33, 330, 619, 881
MaeIII	GTNAC	2 cut(s)	408, 707
MalI	GATC	3 cut(s)	826, 1016, 1206
MboI	GATC	3 cut(s)	824, 1014, 1204
MboII	GAAGA	5 cut(s)	494, 608, 622, 704, 1010
MflI	RGATCY	2 cut(s)	824, 1204
MhlI	GDGCHC	1 cut(s)	1092
MluCI	AATT	4 cut(s)	131, 212, 279, 566
MnlI	CCTC	6 cut(s)	138, 232, 308, 399, 414, 1093
MroXI	GAANNNNTTC	3 cut(s)	254, 555, 647
MseI	TTAA	4 cut(s)	443, 744, 1074, 1137
MspCI	CTTAAG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	1247
MvaI	CCWGG	1 cut(s)	1247
MwoI	GCNNNNNNNGC	1 cut(s)	99
NdeII	GATC	3 cut(s)	824, 1014, 1204
NlaIII	CATG	2 cut(s)	184, 1186
NlaIV	GGNNCC	3 cut(s)	87, 301, 1267
NmuCI	GTSAC	1 cut(s)	408
NspV	TTCGAA	1 cut(s)	272
PciSI	GCTCTTC	1 cut(s)	477
PcsI	WCGNNNNNNNCGW	1 cut(s)	1029
PdmI	GAANNNNTTC	3 cut(s)	254, 555, 647
PfeI	GAWTC	5 cut(s)	334, 377, 463, 515, 870
PkrI	GCNGC	3 cut(s)	751, 959, 1049
Psp6I	CCWGG	1 cut(s)	1245
PspEI	GGTNACC	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	1245
PspN4I	GGNNCC	3 cut(s)	87, 301, 1267
PspPI	GGNCC	1 cut(s)	146
PstNI	CAGNNNCTG	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	824, 1204
RsaI	GTAC	3 cut(s)	301, 679, 1267
RsaNI	GTAC	3 cut(s)	300, 678, 1266
SapI	GCTCTTC	1 cut(s)	477
SaqAI	TTAA	4 cut(s)	443, 744, 1074, 1137
SatI	GCNGC	3 cut(s)	750, 958, 1048
Sau3AI	GATC	3 cut(s)	824, 1014, 1204
Sau96I	GGNCC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	1247
SduI	GDGCHC	1 cut(s)	1092
SfaNI	GCATC	4 cut(s)	334, 525, 571, 877
SfcI	CTRYAG	2 cut(s)	79, 820
SfuI	TTCGAA	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	4 cut(s)	131, 212, 279, 566
SsiI	CCGC	1 cut(s)	100
SspI	AATATT	2 cut(s)	203, 910
SspMI	CTAG	5 cut(s)	24, 338, 431, 1043, 1175
StyD4I	CCNGG	1 cut(s)	1245
StyI	CCWWGG	2 cut(s)	413, 918
TaaI	ACNGT	5 cut(s)	255, 366, 450, 701, 994
TaiI	ACGT	4 cut(s)	36, 333, 622, 884
TaqI	TCGA	4 cut(s)	140, 272, 306, 1032
TasI	AATT	4 cut(s)	131, 212, 279, 566
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	5 cut(s)	334, 377, 463, 515, 870
Tru1I	TTAA	4 cut(s)	443, 744, 1074, 1137
Tru9I	TTAA	4 cut(s)	443, 744, 1074, 1137
TscAI	CASTG	5 cut(s)	49, 252, 658, 997, 1225
TseFI	GTSAC	1 cut(s)	408
TseI	GCWGC	3 cut(s)	749, 957, 1047
Tsp45I	GTSAC	1 cut(s)	408
TspDTI	ATGAA	5 cut(s)	29, 108, 343, 1155, 1199
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	5 cut(s)	49, 252, 658, 997, 1225
Vha464I	CTTAAG	1 cut(s)	743
VneI	GTGCAC	1 cut(s)	1088
XapI	RAATTY	2 cut(s)	212, 279
XbaI	TCTAGA	1 cut(s)	430
XmnI	GAANNNNTTC	3 cut(s)	254, 555, 647
XspI	CTAG	5 cut(s)	24, 338, 431, 1043, 1175
ZraI	GACGTC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.