Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Reverse (-)

24236386 .. 24240879

Gene Structure 4494 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00303810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2223 bp

ATGGCCGGTGGTGGAGGTGACGCGCCGCCTCTGCCGGCGTCTAACGGCGGCGGCGAATTCCTCCTCTCCCTGCTCCAGAAGGCCCCGCACCACCACTACCAGGGACGCTCGCCCCAACCACAGCAATCTACGGTGATCGATCCTGCCGTGGCCGCCGTGGGCCCCACCGTAACGTTCCAGCAGCAGATTCAGCCGCCGTGGGGATCGTCGTCGTCATCCAACGGCCGAGATCATCCTCCTGCTCTTCACCACCACCCTCATCAGCAGATTCCGAACCCTTCCTGGCCCAATTCCCAATCTCCTTCTCCTCCTTTGAACTTCCTAGGGTTTCCTCAAAACCTCTACTCCTCTCCTCCCACGCCCAACCACTTCCCCCAGTTTGGCAGCAGCCAATTCCCCGGAAATCAAATCCTCGCCGACGATTTCAGGAAGATTGGGTTTTCGACTCCTCCGAACAATTCCATCCAAGACCTTGCTCTGCAGAAACAGCACCAAGAACAGAAGCTCAAGTTTAGATATTTACCTGGCGATATTATCCGAAATCCGGAGTCTTCAGTAAATGCCATTACTTCCTCTGAAGTTGCCAAGCTCAGTAATGGCTTGGACCGCAATCTCCACTTGAATTCCAACAATTCATCTGAGTTTCGTCGCGGGAATTTCGATTCAGGGGAGCAAGAATCGAGAGCGGGAGGGGTCGGCGGTGGCGGCAGGGGGAAGCAAGTTCGTAGGACAATGCCGCCGCCGGGGTTTGGAAACAAGCCTAGGGGAGGAGGAATTGGGATTCCGGGAGTAGGAGGGGAGAATGAGAGAGTGAAAAGATTGGGAGGTGAAGATGGTCGAATTCGAGGAAATGGGGCTAGTAGAACGGGGCTCAGTGCACAGCTTGATCGCTCTGGTCCACCCGCTGGCACCAATCTCCATTCTGTTTCTGCTTCGGAGATTGAAGAGTCGATGATGAATTTCGAGGATGGGGAGAGGGCAAGAAAGGATAGTGGCAGCGGTGAAGATGTAAGCCAACACTTGCTTGAGGATGAAACGGATGACAAGAATGAGGCAAAGCAACACCATAAGGATTCGAGATCAGATAACAGAGGACAACACCAACTTAGCCAAAGAGCGAGATCGTACAAAAGACAAACACTATGTCGCTTTGACATAGACAGACTAAATGCTCCTTTTCTTGAAATTTTTGAATCCTTGATACCAACTGAGGAAGAAAAGGCCAAGCAGAAGCAATTATTGACATTATTGGAGAATATAATTTGCAAAGAATGGCCTGAAGCTCGCCTTTATATTTATGGATCATGTGGCAATTCATTTGGAGTTTCTAAAAGTGATATAGATCTCTGTCTGGTGATTGGTGAAGAAGATATTAACAAATCTGAGATCTTACTACGGTTGGCAGATCTTTTGCAGTCAGACAATCTAGAGAATGTACAGGCAAGCTCTCAGGGGATGATGCTTAGAGTATTCTCATCACAGCTTTATGAGCAGGTGACTGCTGCTAAAGCAATTGCCTATTCAGCATTGACGCGTGCTAGGGTCCCCATAGTAAAGCTTATGGATCCTGTCACTGGAATATCTTGTGATATATGCATCAACAATGTTCTGGCTGTGGTAAATACAAAGCTTCTTCGTGATTATGCAAATATAGATGCAAGATTACGACAATTGGCTTTTATTGTGAAACATTGGGCCAAGTCGAGAGGAGTCAATGAAACTTACCATGGAACCCTATCTAGCTATGCGTATGTTTTGATGTGTATACATTTCTTACAACAGCGGAGACCTGCTATTCTTCCCTGTTTACAGGGAATGCGGACAACATACTCGGTCACTGTAGAGAACATTGAATGTGCTTTCTTTGATCAAGTAGACAAACTTCAAGAATTTGGATCCCATAACAGGGAAACTACTGCTGAACTTGTGTGGGCTTTTTTCAATTACTGGGCATATAGTCATGATTACGCAAATACTGTTATATCTGTTCGTAGAGGAAGCACAATCAGCAAGCAGGAAAAGGACTGGACAAGGAGGATTGGAAATGACCGGCATTTGATATGCATAGAGGATCCGTTTGAGACGTCCCATGACTTGGGACGAGTTGTAGACAAGCACAGCATAAAAGTTTTGAGGGAGGAGTTTGAACGTGCCGCTGAGATAATGCAGTATGATGCAAATCCCTGTGTGAAGCTCTTTGAACCATATGTTCCCAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

740

Amino Acids

82.2

Weight (kDa)

6.57

Isoelectric Point (pI)

56.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	393 - 549	1.7e-28	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TUTase	PF19088	398 - 475	7.2e-06	TUTase nucleotidyltransferase domain
PAP_assoc	PF03828	640 - 697	5.3e-19	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1483
AatII	GACGTC	1 cut(s)	2087
Acc36I	ACCTGC	2 cut(s)	1483, 1798
AccB1I	GGYRCC	1 cut(s)	908
AccB7I	CCANNNNNTGG	2 cut(s)	905, 2095
AccBSI	CCGCTC	1 cut(s)	686
AccI	GTMKAC	3 cut(s)	1765, 1875, 2109
AccII	CGCG	3 cut(s)	23, 651, 1534
AccIII	TCCGGA	1 cut(s)	544
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	9 cut(s)	134, 211, 1309, 1559, 1572, 1890, 1903, 2066, 2079
AcoI	YGGCCR	3 cut(s)	3, 150, 223
AcsI	RAATTY	7 cut(s)	56, 622, 655, 840, 958, 1185, 1889
AcuI	CTGAAG	3 cut(s)	537, 597, 1299
AcyI	GRCGYC	2 cut(s)	38, 2084
AfaI	GTAC	2 cut(s)	1127, 1437
AflIII	ACRYGT	1 cut(s)	1532
AjnI	CCWGG	3 cut(s)	99, 281, 523
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	2 cut(s)	1780, 2075
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	9 cut(s)	134, 211, 1309, 1559, 1572, 1890, 1903, 2066, 2079
Aor13HI	TCCGGA	1 cut(s)	544
AoxI	GGCC	9 cut(s)	3, 81, 150, 160, 223, 284, 1221, 1274, 1695
ApaI	GGGCCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	5 cut(s)	181, 384, 387, 996, 1502
ApoI	RAATTY	7 cut(s)	56, 622, 655, 840, 958, 1185, 1889
ArsI	GACNNNNNNTTYG	2 cut(s)	1129, 1161
AspA2I	CCTAGG	2 cut(s)	322, 761
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	8 cut(s)	82, 160, 161, 285, 604, 896, 1543, 1695
AsuC2I	CCSGG	3 cut(s)	399, 744, 786
AsuHPI	GGTGA	8 cut(s)	29, 145, 239, 839, 1013, 1366, 1373, 1507
AvaII	GGWCC	3 cut(s)	604, 896, 1543
AvrII	CCTAGG	2 cut(s)	322, 761
BaeGI	GKGCMC	2 cut(s)	164, 880
BamHI	GGATCC	3 cut(s)	1564, 1895, 2071
BanI	GGYRCC	1 cut(s)	908
BanII	GRGCYC	2 cut(s)	164, 873
BarI	GAAGNNNNNNTAC	2 cut(s)	1866, 1898
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	5 cut(s)	193, 396, 399, 1008, 1489
BccI	CCATC	3 cut(s)	470, 827, 962
BceAI	ACGGC	5 cut(s)	61, 131, 140, 181, 238
BciT130I	CCWGG	3 cut(s)	101, 283, 525
BclI	TGATCA	1 cut(s)	1867
BcnI	CCSGG	3 cut(s)	399, 744, 786
BcoDI	GTCTC	2 cut(s)	1780, 2075
BfaI	CTAG	6 cut(s)	323, 762, 858, 1427, 1539, 1740
BfmI	CTRYAG	2 cut(s)	479, 1839
BfuAI	ACCTGC	2 cut(s)	1483, 1798
BglII	AGATCT	3 cut(s)	1342, 1386, 1405
BlnI	CCTAGG	2 cut(s)	322, 761
Bme1390I	CCNGG	6 cut(s)	101, 283, 399, 525, 744, 786
Bme18I	GGWCC	3 cut(s)	604, 896, 1543
BmgT120I	GGNCC	8 cut(s)	82, 160, 161, 285, 604, 896, 1543, 1695
BmrFI	CCNGG	6 cut(s)	101, 283, 399, 525, 744, 786
BmrI	ACTGGG	3 cut(s)	370, 1957, 2208
BmsI	GCATC	4 cut(s)	1449, 1605, 1645, 2164
BmuI	ACTGGG	3 cut(s)	370, 1957, 2208
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	491, 1046
BpuMI	CCSGG	3 cut(s)	399, 744, 786
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	2 cut(s)	1341, 2178
BsaHI	GRCGYC	2 cut(s)	38, 2084
BsaI	GGTCTC	1 cut(s)	1780
BsaJI	CCNNGG	9 cut(s)	100, 147, 156, 197, 322, 397, 743, 761, 1726
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse118I	RCCGGY	3 cut(s)	5, 34, 2049
Bse1I	ACTGG	5 cut(s)	376, 1579, 1952, 2030, 2214
Bse8I	GATNNNNATC	2 cut(s)	1341, 2178
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	3 cut(s)	101, 283, 525
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	9 cut(s)	100, 147, 156, 197, 322, 397, 743, 761, 1726
BseGI	GGATG	7 cut(s)	215, 232, 462, 973, 1036, 1045, 1461
BseJI	GATNNNNATC	2 cut(s)	1341, 2178
BseMII	CTCAG	7 cut(s)	604, 630, 886, 1200, 1374, 1463, 2148
BseNI	ACTGG	5 cut(s)	376, 1579, 1952, 2030, 2214
BseRI	GAGGAG	8 cut(s)	53, 297, 337, 342, 438, 783, 1722, 2153
BseSI	GKGCMC	2 cut(s)	164, 880
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	5 cut(s)	193, 396, 399, 1008, 1489
Bsh1236I	CGCG	3 cut(s)	23, 651, 1534
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	9 cut(s)	5, 83, 152, 162, 225, 286, 1223, 1276, 1697
BshNI	GGYRCC	1 cut(s)	908
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	7 cut(s)	6, 35, 399, 545, 743, 785, 2050
BslFI	GGGAC	4 cut(s)	117, 1529, 2071, 2112
BsmAI	GTCTC	2 cut(s)	1780, 2075
BsmBI	CGTCTC	1 cut(s)	2075
BsmFI	GGGAC	4 cut(s)	117, 1529, 2071, 2112
BsmI	GAATGC	1 cut(s)	1821
BsnI	GGCC	9 cut(s)	5, 83, 152, 162, 225, 286, 1223, 1276, 1697
Bso31I	GGTCTC	1 cut(s)	1780
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 873, 880
Bsp13I	TCCGGA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	1435
Bsp19I	CCATGG	1 cut(s)	1726
BspANI	GGCC	9 cut(s)	5, 83, 152, 162, 225, 286, 1223, 1276, 1697
BspCNI	CTCAG	7 cut(s)	603, 631, 885, 1201, 1375, 1462, 2149
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	3 cut(s)	23, 651, 1534
BspHI	TCATGA	1 cut(s)	1960
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	2 cut(s)	1483, 1798
BspPI	GGATC	9 cut(s)	134, 211, 1309, 1559, 1572, 1890, 1903, 2066, 2079
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	1780
BsrBI	CCGCTC	1 cut(s)	686
BsrFI	RCCGGY	3 cut(s)	5, 34, 2049
BsrGI	TGTACA	1 cut(s)	1435
BsrI	ACTGG	5 cut(s)	376, 1579, 1952, 2030, 2214
BssAI	RCCGGY	3 cut(s)	5, 34, 2049
BssECI	CCNNGG	9 cut(s)	100, 147, 156, 197, 322, 397, 743, 761, 1726
BssNAI	GTATAC	1 cut(s)	1766
BssNI	GRCGYC	2 cut(s)	38, 2084
BssT1I	CCWWGG	3 cut(s)	322, 761, 1726
Bst1107I	GTATAC	1 cut(s)	1766
Bst2UI	CCWGG	3 cut(s)	101, 283, 525
Bst4CI	ACNGT	5 cut(s)	133, 169, 1398, 1840, 1978
Bst6I	CTCTTC	2 cut(s)	249, 939
BstACI	GRCGYC	2 cut(s)	38, 2084
BstAUI	TGTACA	1 cut(s)	1435
BstC8I	GCNNGC	7 cut(s)	36, 110, 907, 1285, 1444, 1536, 2012
BstDEI	CTNAG	9 cut(s)	590, 639, 872, 1106, 1209, 1383, 1449, 1463, 2157
BstDSI	CCRYGG	4 cut(s)	147, 156, 197, 1726
BstENI	CCTNNNNNAGG	1 cut(s)	765
BstF5I	GGATG	7 cut(s)	215, 232, 462, 973, 1036, 1045, 1461
BstFNI	CGCG	3 cut(s)	23, 651, 1534
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	1780, 2075
BstMCI	CGRYCG	1 cut(s)	226
BstNI	CCWGG	3 cut(s)	101, 283, 525
BstSCI	CCNGG	6 cut(s)	99, 281, 397, 523, 742, 784
BstSFI	CTRYAG	2 cut(s)	479, 1839
BstSLI	GKGCMC	2 cut(s)	164, 880
BstUI	CGCG	3 cut(s)	23, 651, 1534
BstV1I	GCAGC	5 cut(s)	193, 396, 399, 1008, 1489
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	6 cut(s)	1342, 1386, 1405, 1564, 1895, 2071
BstYI	RGATCY	6 cut(s)	1342, 1386, 1405, 1564, 1895, 2071
BstZ17I	GTATAC	1 cut(s)	1766
BstZI	CGGCCG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	9 cut(s)	5, 83, 152, 162, 225, 286, 1223, 1276, 1697
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	4 cut(s)	147, 156, 197, 1726
BtsCI	GGATG	7 cut(s)	215, 232, 462, 973, 1036, 1045, 1461
BtsIMutI	CAGTG	4 cut(s)	880, 1572, 1836, 2221
BveI	ACCTGC	2 cut(s)	1483, 1798
Cac8I	GCNNGC	7 cut(s)	36, 110, 907, 1285, 1444, 1536, 2012
CciI	TCATGA	1 cut(s)	1960
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	3 cut(s)	5, 34, 2049
Cfr13I	GGNCC	8 cut(s)	82, 160, 161, 285, 604, 896, 1543, 1695
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	4 cut(s)	27, 29, 114, 1540
Csp6I	GTAC	2 cut(s)	1126, 1436
CviAII	CATG	4 cut(s)	1305, 1727, 1961, 2090
CviQI	GTAC	2 cut(s)	1126, 1436
DdeI	CTNAG	9 cut(s)	590, 639, 872, 1106, 1209, 1383, 1449, 1463, 2157
EaeI	YGGCCR	3 cut(s)	3, 150, 223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	249, 939
EarI	CTCTTC	2 cut(s)	249, 939
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	322, 761, 1726
Eco24I	GRGCYC	2 cut(s)	164, 873
Eco31I	GGTCTC	1 cut(s)	1780
Eco47I	GGWCC	3 cut(s)	604, 896, 1543
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	537, 597, 1299
EcoNI	CCTNNNNNAGG	1 cut(s)	765
EcoO109I	RGGNCCY	3 cut(s)	82, 161, 1543
EcoRI	GAATTC	3 cut(s)	56, 622, 840
EcoRII	CCWGG	3 cut(s)	99, 281, 523
EcoT14I	CCWWGG	3 cut(s)	322, 761, 1726
EcoT22I	ATGCAT	2 cut(s)	1598, 2066
EcoT38I	GRGCYC	2 cut(s)	164, 873
ErhI	CCWWGG	3 cut(s)	322, 761, 1726
Esp3I	CGTCTC	1 cut(s)	2075
FaeI	CATG	4 cut(s)	1308, 1730, 1964, 2093
FalI	AAGNNNNNCTT	2 cut(s)	1272, 1304
FaqI	GGGAC	4 cut(s)	117, 1529, 2071, 2112
FatI	CATG	4 cut(s)	1304, 1726, 1960, 2089
FauI	CCCGC	4 cut(s)	93, 644, 679, 910
FauNDI	CATATG	1 cut(s)	2206
FbaI	TGATCA	1 cut(s)	1867
FblI	GTMKAC	3 cut(s)	1765, 1875, 2109
FokI	GGATG	7 cut(s)	202, 219, 449, 980, 1043, 1052, 1468
FriOI	GRGCYC	2 cut(s)	164, 873
FspBI	CTAG	6 cut(s)	323, 762, 858, 1427, 1539, 1740
GlaI	GCGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	9 cut(s)	5, 83, 152, 162, 225, 286, 1223, 1276, 1697
HapII	CCGG	7 cut(s)	6, 35, 399, 545, 743, 785, 2050
HgaI	GACGC	4 cut(s)	27, 29, 114, 1540
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	2 cut(s)	38, 2084
Hin1II	CATG	4 cut(s)	1308, 1730, 1964, 2093
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	1556, 1628
HpaII	CCGG	7 cut(s)	6, 35, 399, 545, 743, 785, 2050
HphI	GGTGA	8 cut(s)	29, 145, 239, 839, 1013, 1366, 1373, 1507
Hpy166II	GTNNAC	6 cut(s)	878, 899, 1766, 1808, 1876, 2110
Hpy188I	TCNGA	9 cut(s)	273, 453, 539, 577, 640, 937, 1084, 1384, 1420
Hpy8I	GTNNAC	6 cut(s)	878, 899, 1766, 1808, 1876, 2110
Hpy99I	CGWCG	4 cut(s)	211, 214, 422, 651
HpyAV	CCTTC	3 cut(s)	73, 288, 312
HpyCH4III	ACNGT	5 cut(s)	133, 169, 1398, 1840, 1978
HpyCH4IV	ACGT	3 cut(s)	173, 2084, 2149
HpyF3I	CTNAG	9 cut(s)	590, 639, 872, 1106, 1209, 1383, 1449, 1463, 2157
HpySE526I	ACGT	3 cut(s)	173, 2084, 2149
Hsp92I	GRCGYC	2 cut(s)	38, 2084
Hsp92II	CATG	4 cut(s)	1308, 1730, 1964, 2093
HspAI	GCGC	1 cut(s)	23
KflI	GGGWCCC	1 cut(s)	1543
Kpn2I	TCCGGA	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	1867
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	3 cut(s)	78, 670, 1177
Lsp1109I	GCAGC	5 cut(s)	193, 396, 399, 1008, 1489
LweI	GCATC	4 cut(s)	1449, 1605, 1645, 2164
MaeI	CTAG	6 cut(s)	323, 762, 858, 1427, 1539, 1740
MaeII	ACGT	3 cut(s)	173, 2084, 2149
MaeIII	GTNAC	5 cut(s)	17, 169, 1495, 1570, 1834
MbiI	CCGCTC	1 cut(s)	686
MfeI	CAATTG	2 cut(s)	1512, 1670
MflI	RGATCY	6 cut(s)	1342, 1386, 1405, 1564, 1895, 2071
MhlI	GDGCHC	3 cut(s)	164, 873, 880
MluI	ACGCGT	1 cut(s)	1532
MlyI	GAGTC	4 cut(s)	439, 557, 956, 1719
MmeI	TCCRAC	2 cut(s)	243, 651
Mph1103I	ATGCAT	2 cut(s)	1598, 2066
MroI	TCCGGA	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	1 cut(s)	1374
MspA1I	CMGCKG	4 cut(s)	905, 999, 1783, 2156
MspI	CCGG	7 cut(s)	6, 35, 399, 545, 743, 785, 2050
MspR9I	CCNGG	6 cut(s)	101, 283, 399, 525, 744, 786
MunI	CAATTG	2 cut(s)	1512, 1670
Mva1269I	GAATGC	1 cut(s)	1821
MvaI	CCWGG	3 cut(s)	101, 283, 525
MvnI	CGCG	3 cut(s)	23, 651, 1534
NaeI	GCCGGC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	399, 744, 786
NcoI	CCATGG	1 cut(s)	1726
NdeI	CATATG	1 cut(s)	2206
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	1308, 1730, 1964, 2093
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	4 cut(s)	17, 1495, 1570, 1834
NsiI	ATGCAT	2 cut(s)	1598, 2066
PagI	TCATGA	1 cut(s)	1960
PaqCI	CACCTGC	1 cut(s)	1483
PciSI	GCTCTTC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 144, 449
PctI	GAATGC	1 cut(s)	1821
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	7 cut(s)	187, 268, 662, 677, 781, 1073, 1193
PflMI	CCANNNNNTGG	2 cut(s)	905, 2095
PfoI	TCCNGGA	1 cut(s)	784
PleI	GAGTC	4 cut(s)	439, 556, 955, 1718
PpsI	GAGTC	4 cut(s)	439, 556, 955, 1718
PpuMI	RGGWCCY	1 cut(s)	1543
Psp1406I	AACGTT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	1543
Psp6I	CCWGG	3 cut(s)	99, 281, 523
PspGI	CCWGG	3 cut(s)	99, 281, 523
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	8 cut(s)	82, 160, 161, 285, 604, 896, 1543, 1695
PspPPI	RGGWCCY	1 cut(s)	1543
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	6 cut(s)	1342, 1386, 1405, 1564, 1895, 2071
RsaI	GTAC	2 cut(s)	1127, 1437
RsaNI	GTAC	2 cut(s)	1126, 1436
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	1374
Sau96I	GGNCC	8 cut(s)	82, 160, 161, 285, 604, 896, 1543, 1695
SchI	GAGTC	4 cut(s)	439, 557, 956, 1719
ScrFI	CCNGG	6 cut(s)	101, 283, 399, 525, 744, 786
SduI	GDGCHC	3 cut(s)	164, 873, 880
SfaNI	GCATC	4 cut(s)	1449, 1605, 1645, 2164
SfcI	CTRYAG	2 cut(s)	479, 1839
SinI	GGWCC	3 cut(s)	604, 896, 1543
SmlI	CTYRAG	2 cut(s)	506, 1025
SmoI	CTYRAG	2 cut(s)	506, 1025
SspMI	CTAG	6 cut(s)	323, 762, 858, 1427, 1539, 1740
StyD4I	CCNGG	6 cut(s)	99, 281, 397, 523, 742, 784
StyI	CCWWGG	3 cut(s)	322, 761, 1726
TaaI	ACNGT	5 cut(s)	133, 169, 1398, 1840, 1978
TaiI	ACGT	3 cut(s)	176, 2087, 2152
TaqII	GACCGA	1 cut(s)	1822
TatI	WGTACW	1 cut(s)	1435
TauI	GCSGC	9 cut(s)	28, 51, 54, 155, 196, 708, 739, 742, 2156
TfiI	GAWTC	7 cut(s)	187, 268, 662, 677, 781, 1073, 1193
Tru1I	TTAA	1 cut(s)	1374
Tru9I	TTAA	1 cut(s)	1374
TscAI	CASTG	4 cut(s)	880, 1579, 1843, 2221
TseFI	GTSAC	4 cut(s)	17, 1495, 1570, 1834
TseI	GCWGC	5 cut(s)	181, 384, 387, 996, 1502
Tsp45I	GTSAC	4 cut(s)	17, 1495, 1570, 1834
TspDTI	ATGAA	5 cut(s)	624, 971, 1047, 1305, 1731
TspGWI	ACGGA	2 cut(s)	1052, 2064
TspRI	CASTG	4 cut(s)	880, 1579, 1843, 2221
Van91I	CCANNNNNTGG	2 cut(s)	905, 2095
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	3 cut(s)	604, 896, 1543
XagI	CCTNNNNNAGG	1 cut(s)	765
XapI	RAATTY	7 cut(s)	56, 622, 655, 840, 958, 1185, 1889
XbaI	TCTAGA	1 cut(s)	1426
XmaJI	CCTAGG	2 cut(s)	322, 761
XmiI	GTMKAC	3 cut(s)	1765, 1875, 2109
XspI	CTAG	6 cut(s)	323, 762, 858, 1427, 1539, 1740
ZraI	GACGTC	1 cut(s)	2085
Zsp2I	ATGCAT	2 cut(s)	1598, 2066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.