Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Forward (+)

44696462 .. 44701636

Gene Structure 5175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57722

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGGCCGGTGGCGGAGGTGACGCGCCGCCTCTGCCGGCGTCTAACGGCGGCGGCGAATTCCTCCTCTCCTTGCTCCAGAAGGCCCCGCACCACCACTACCAGGGACGCTCGCCCCAACCGCAGCAATCTACGGTGATCGATCCCGCCGTGGCCGCCGTGGGCCCCACCGTAACGTTCCAGCAGCAGATTCAGCCGCCGTGGGGATCGTCGTCGTCATCCAACGGCCGAGATCATCCTCCTGCTCTTCACCCCCACCATCAGCAGCAGATTCCGAACCCTTCCTGGCCCAATTCCCAATCTCCTCCTCCTCCTTTCAACTTCCGAGGGTTTCCTCAAAACCCTTACTCCTCTCCTCCCACGCCCAACCACTTCCCCCAGTTCGGCAGCAGCCAATTCCCCGGAAATCAAATCCTCGCCGACGATTTCAGGAAGATTGGGTTTTCGACTCCTCCGAACAATTCCATCCAAGACCTTGCTCTGCAGAAACAGCACCAAGAACAGAAGCTCAAGTTTAGATATTTACCTGGCGATATTATCCGAAATCCGGAGTCGTCAGTAAATGCCATTACTTCCTCTGAAGTTGCCAAGCTCAGTAATGGCTTGGACCACAATCTCCACTTGAATTCCAACAATTCATCTGAGTTTCGTCGCGGGAATTTCGATTCAGGGGAGCAAGAATCGAGAGGGGGAGGGGTCGGCGGTGGCGGCAGGGGGAAGCAAGTTCGTAGGACAATGCCGCCGCCGGGGTTCGGAAACAAGCCTAGGGGAGGAGGGAATTGGGATTCCGGGAGTAGGAGGGGAGGTATGGAGCACAATGTGGATAGGGAAAGGCACAGTTCTAGTGAATTTGTGAGGAATAGGGATGCTTCTATTGAGAATGAGAGAGTGAGAAGATTGGGAGGTGAAGATGGTCGAATTCGAGGAACTGGGGCTAGTAGAACGGGCCTCAGTGCACAGCTTGATCGCTCTGGTCCACCCGCTGGCACCAATCTCCATTCTGTTTCTGCTTCGGAGATTGAAGAGTCGATGATGAATTTCGAGGATGGGGAGAGGGCAAGAAAGGATAGTGGCGGCGGTGAAGATGTAAGCCAACACTTGCTTGAGGATGAAACGGATGACAAGAATGAGGCAAAGCAACACCATAAGGATTCGAGATCAGATAACAGAGGACAACACCAACTTAGCCAAAGAGCGAGATCGTACAAAAGACAAACACTATGTCGCTTTGACATAGACAGACTAAATGCTCCTTTTCTTGAAATTTTTGAATCCTTGATACCAACTGAGGAAGAAAAGGCCAAGCAGAAGCAATTATTGACATTATTGGAGAATATAATCTGCAAAGAATGGCCTGAAGCTCGCCTTTATATTTATGGATCATGTGGCAATTCATTTGGAGTTTCTAAAAGTGATATAGATCTCTGTCTGGTGATTGGTGAAGAAGATATTAACAAATCTGAGATCTTACTACGGTTGGCAGATCTTTTGCAGTCAGACAATCTAGAGAATGTACAGGCATTGACGCGTGCTAGGGTCCCCATAGTAAAGCTTATGGATCCTGTCACTGGAATATCGTGTGATATATGCATCAACAATGTTCTGGCTGTGGTAAATACAAAGCTTCTTCGTGATTATGCAAATATAGATGCAAGATTACGACAATTGGCTTTTATTGTGAAACATTGGGCCAAGTCGAGAGGAGTCAATGAAACTTACCATGGAACCCTATCTAGCTATGCGTATGTTTTGATGTGTATACATTTCTTACAACAGCGGAGACCTGCTATTCTTCCCTGTTTACAGGGAATGCGGGCAACATACTCGGTCACTGTAGAGAACATTGAATGTGCCTTCTTTGATCAAGTAGACAAACTTCAAGAATTTGGATCCCATAACAGGGAAACTATTGCTGAACTTGTGTGGGCTTTTTTCAATTACTGGGCATATAGTCATGATTACGCAAATACTGTTATATCCGTTCGTAGAGGAAGCACAATCAGCAAGCGGGAAAAGGACTGGACAAGGAGGATTGGAAATGACCGGCATTTGATATGCATAGAGGATCCGTTTGAGACGTCCCATGACCTGGGACGAGTTGTAGACAAGCACAGCATAAAAGTTTTGAGGGAGGAGTTTGAACGTGCCGCTGAGATAATGCAGTATGATGCAAATCCCTGTGTGAAGCTCTTTGAACCCTATGTTCCTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

737

Amino Acids

82.37

Weight (kDa)

6.61

Isoelectric Point (pI)

59.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	418 - 546	8.1e-33	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TUTase	PF19088	423 - 528	1.6e-09	TUTase nucleotidyltransferase domain
PAP_assoc	PF03828	636 - 694	1.2e-19	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2078
Acc36I	ACCTGC	1 cut(s)	1789
AccB1I	GGYRCC	1 cut(s)	983
AccB7I	CCANNNNNTGG	2 cut(s)	980, 2086
AccI	GTMKAC	3 cut(s)	1756, 1866, 2100
AccII	CGCG	3 cut(s)	23, 651, 1525
AccIII	TCCGGA	1 cut(s)	544
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	9 cut(s)	134, 211, 1384, 1550, 1563, 1881, 1894, 2057, 2070
AcoI	YGGCCR	3 cut(s)	3, 150, 223
AcsI	RAATTY	8 cut(s)	56, 622, 655, 845, 915, 1033, 1260, 1880
AcuI	CTGAAG	2 cut(s)	597, 1374
AcyI	GRCGYC	2 cut(s)	38, 2075
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	2 cut(s)	1202, 1512
AflIII	ACRYGT	1 cut(s)	1523
AjnI	CCWGG	4 cut(s)	99, 281, 523, 2085
AluBI	AGCT	8 cut(s)	505, 589, 958, 1358, 1549, 1621, 1734, 2185
AluI	AGCT	8 cut(s)	505, 589, 958, 1358, 1549, 1621, 1734, 2185
Alw21I	GWGCWC	2 cut(s)	813, 955
Alw26I	GTCTC	2 cut(s)	1771, 2066
Alw44I	GTGCAC	1 cut(s)	951
AlwI	GGATC	9 cut(s)	134, 211, 1384, 1550, 1563, 1881, 1894, 2057, 2070
Aor13HI	TCCGGA	1 cut(s)	544
ApaI	GGGCCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	951
ApeKI	GCWGC	5 cut(s)	121, 181, 262, 384, 387
ApoI	RAATTY	8 cut(s)	56, 622, 655, 845, 915, 1033, 1260, 1880
ArsI	GACNNNNNNTTYG	2 cut(s)	1204, 1236
AspA2I	CCTAGG	1 cut(s)	761
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	9 cut(s)	82, 160, 161, 285, 604, 943, 971, 1534, 1686
AsuC2I	CCSGG	3 cut(s)	399, 744, 787
AsuHPI	GGTGA	7 cut(s)	29, 145, 239, 914, 1088, 1441, 1448
AvaII	GGWCC	3 cut(s)	604, 971, 1534
AvrII	CCTAGG	1 cut(s)	761
BaeGI	GKGCMC	2 cut(s)	164, 955
BamHI	GGATCC	3 cut(s)	1555, 1886, 2062
BanI	GGYRCC	1 cut(s)	983
BanII	GRGCYC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	1857, 1889
Bbv12I	GWGCWC	2 cut(s)	813, 955
BbvI	GCAGC	5 cut(s)	133, 193, 274, 396, 399
BccI	CCATC	4 cut(s)	264, 470, 902, 1037
BceAI	ACGGC	5 cut(s)	61, 131, 140, 181, 238
BcgI	CGANNNNNNTGC	2 cut(s)	1803, 1837
BciT130I	CCWGG	4 cut(s)	101, 283, 525, 2087
BclI	TGATCA	1 cut(s)	1858
BcnI	CCSGG	3 cut(s)	399, 744, 787
BcoDI	GTCTC	2 cut(s)	1771, 2066
BfaI	CTAG	7 cut(s)	762, 840, 933, 1502, 1530, 1731, 2205
BfmI	CTRYAG	2 cut(s)	479, 1830
BfuAI	ACCTGC	1 cut(s)	1789
BglII	AGATCT	3 cut(s)	1417, 1461, 1480
BlnI	CCTAGG	1 cut(s)	761
Bme1390I	CCNGG	7 cut(s)	101, 283, 399, 525, 744, 787, 2087
Bme18I	GGWCC	3 cut(s)	604, 971, 1534
BmgT120I	GGNCC	9 cut(s)	82, 160, 161, 285, 604, 943, 971, 1534, 1686
BmrFI	CCNGG	7 cut(s)	101, 283, 399, 525, 744, 787, 2087
BmrI	ACTGGG	3 cut(s)	370, 936, 1948
BmsI	GCATC	4 cut(s)	853, 1596, 1636, 2155
BmuI	ACTGGG	3 cut(s)	370, 936, 1948
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	491, 1121
BpuMI	CCSGG	3 cut(s)	399, 744, 787
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	2 cut(s)	1416, 2169
BsaHI	GRCGYC	2 cut(s)	38, 2075
BsaI	GGTCTC	1 cut(s)	1771
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 787, 817
Bse118I	RCCGGY	3 cut(s)	5, 34, 2040
Bse1I	ACTGG	5 cut(s)	376, 931, 1570, 1943, 2021
Bse8I	GATNNNNATC	2 cut(s)	1416, 2169
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	4 cut(s)	101, 283, 525, 2087
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	7 cut(s)	215, 232, 462, 868, 1048, 1111, 1120
BseJI	GATNNNNATC	2 cut(s)	1416, 2169
BseMII	CTCAG	6 cut(s)	604, 630, 961, 1275, 1449, 2139
BseNI	ACTGG	5 cut(s)	376, 931, 1570, 1943, 2021
BseSI	GKGCMC	2 cut(s)	164, 955
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	5 cut(s)	133, 193, 274, 396, 399
Bsh1236I	CGCG	3 cut(s)	23, 651, 1525
Bsh1285I	CGRYCG	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	983
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	813, 955
BsiSI	CCGG	7 cut(s)	6, 35, 399, 545, 743, 786, 2041
BslFI	GGGAC	4 cut(s)	117, 1520, 2062, 2103
BsmAI	GTCTC	2 cut(s)	1771, 2066
BsmBI	CGTCTC	1 cut(s)	2066
BsmFI	GGGAC	4 cut(s)	117, 1520, 2062, 2103
BsmI	GAATGC	1 cut(s)	1812
Bso31I	GGTCTC	1 cut(s)	1771
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 813, 955
Bsp13I	TCCGGA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	1510
Bsp19I	CCATGG	1 cut(s)	1717
BspCNI	CTCAG	6 cut(s)	603, 631, 960, 1276, 1450, 2140
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	3 cut(s)	23, 651, 1525
BspHI	TCATGA	1 cut(s)	1951
BspMAI	CTGCAG	1 cut(s)	483
BspMI	ACCTGC	1 cut(s)	1789
BspPI	GGATC	9 cut(s)	134, 211, 1384, 1550, 1563, 1881, 1894, 2057, 2070
BspQI	GCTCTTC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	983
BspTNI	GGTCTC	1 cut(s)	1771
BsrFI	RCCGGY	3 cut(s)	5, 34, 2040
BsrGI	TGTACA	1 cut(s)	1510
BsrI	ACTGG	5 cut(s)	376, 931, 1570, 1943, 2021
BssAI	RCCGGY	3 cut(s)	5, 34, 2040
BssNAI	GTATAC	1 cut(s)	1757
BssNI	GRCGYC	2 cut(s)	38, 2075
BssT1I	CCWWGG	2 cut(s)	761, 1717
Bst1107I	GTATAC	1 cut(s)	1757
Bst2UI	CCWGG	4 cut(s)	101, 283, 525, 2087
Bst4CI	ACNGT	6 cut(s)	133, 169, 836, 1473, 1831, 1969
Bst6I	CTCTTC	2 cut(s)	249, 1014
BstACI	GRCGYC	2 cut(s)	38, 2075
BstAUI	TGTACA	1 cut(s)	1510
BstC8I	GCNNGC	7 cut(s)	36, 110, 982, 1360, 1527, 1812, 2003
BstDEI	CTNAG	7 cut(s)	590, 639, 947, 1181, 1284, 1458, 2148
BstDSI	CCRYGG	4 cut(s)	147, 156, 197, 1717
BstENI	CCTNNNNNAGG	1 cut(s)	765
BstF5I	GGATG	7 cut(s)	215, 232, 462, 868, 1048, 1111, 1120
BstFNI	CGCG	3 cut(s)	23, 651, 1525
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	2 cut(s)	1771, 2066
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	7 cut(s)	31, 118, 152, 190, 487, 705, 1998
BstNI	CCWGG	4 cut(s)	101, 283, 525, 2087
BstSCI	CCNGG	7 cut(s)	99, 281, 397, 523, 742, 785, 2085
BstSFI	CTRYAG	2 cut(s)	479, 1830
BstSLI	GKGCMC	2 cut(s)	164, 955
BstUI	CGCG	3 cut(s)	23, 651, 1525
BstV1I	GCAGC	5 cut(s)	133, 193, 274, 396, 399
BstX2I	RGATCY	6 cut(s)	1417, 1461, 1480, 1555, 1886, 2062
BstYI	RGATCY	6 cut(s)	1417, 1461, 1480, 1555, 1886, 2062
BstZ17I	GTATAC	1 cut(s)	1757
BstZI	CGGCCG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	4 cut(s)	147, 156, 197, 1717
BtsCI	GGATG	7 cut(s)	215, 232, 462, 868, 1048, 1111, 1120
BtsIMutI	CAGTG	3 cut(s)	955, 1563, 1827
BveI	ACCTGC	1 cut(s)	1789
Cac8I	GCNNGC	7 cut(s)	36, 110, 982, 1360, 1527, 1812, 2003
CciI	TCATGA	1 cut(s)	1951
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	3 cut(s)	5, 34, 2040
Cfr13I	GGNCC	9 cut(s)	82, 160, 161, 285, 604, 943, 971, 1534, 1686
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	4 cut(s)	27, 29, 114, 1531
Csp6I	GTAC	2 cut(s)	1201, 1511
CviAII	CATG	4 cut(s)	1380, 1718, 1952, 2081
CviQI	GTAC	2 cut(s)	1201, 1511
DdeI	CTNAG	7 cut(s)	590, 639, 947, 1181, 1284, 1458, 2148
DraIII	CACNNNGTG	1 cut(s)	817
EaeI	YGGCCR	3 cut(s)	3, 150, 223
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	2 cut(s)	249, 1014
EarI	CTCTTC	2 cut(s)	249, 1014
EciI	GGCGGA	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	2 cut(s)	761, 1717
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	1771
Eco47I	GGWCC	3 cut(s)	604, 971, 1534
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	597, 1374
EcoNI	CCTNNNNNAGG	1 cut(s)	765
EcoO109I	RGGNCCY	3 cut(s)	82, 161, 1534
EcoRI	GAATTC	3 cut(s)	56, 622, 915
EcoRII	CCWGG	4 cut(s)	99, 281, 523, 2085
EcoT14I	CCWWGG	2 cut(s)	761, 1717
EcoT22I	ATGCAT	2 cut(s)	1589, 2057
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	761, 1717
Esp3I	CGTCTC	1 cut(s)	2066
FaeI	CATG	4 cut(s)	1383, 1721, 1955, 2084
FalI	AAGNNNNNCTT	2 cut(s)	1347, 1379
FaqI	GGGAC	4 cut(s)	117, 1520, 2062, 2103
FatI	CATG	4 cut(s)	1379, 1717, 1951, 2080
FauI	CCCGC	6 cut(s)	93, 151, 644, 985, 1803, 1998
FbaI	TGATCA	1 cut(s)	1858
FblI	GTMKAC	3 cut(s)	1756, 1866, 2100
FokI	GGATG	7 cut(s)	202, 219, 449, 875, 1055, 1118, 1127
FriOI	GRGCYC	1 cut(s)	164
FspBI	CTAG	7 cut(s)	762, 840, 933, 1502, 1530, 1731, 2205
GlaI	GCGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	59
HapII	CCGG	7 cut(s)	6, 35, 399, 545, 743, 786, 2041
HgaI	GACGC	4 cut(s)	27, 29, 114, 1531
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	2 cut(s)	38, 2075
Hin1II	CATG	4 cut(s)	1383, 1721, 1955, 2084
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	2 cut(s)	1547, 1619
HpaII	CCGG	7 cut(s)	6, 35, 399, 545, 743, 786, 2041
HphI	GGTGA	7 cut(s)	29, 145, 239, 914, 1088, 1441, 1448
Hpy166II	GTNNAC	6 cut(s)	953, 974, 1757, 1799, 1867, 2101
Hpy8I	GTNNAC	6 cut(s)	953, 974, 1757, 1799, 1867, 2101
Hpy99I	CGWCG	4 cut(s)	211, 214, 422, 651
HpyAV	CCTTC	3 cut(s)	73, 288, 1861
HpyCH4III	ACNGT	6 cut(s)	133, 169, 836, 1473, 1831, 1969
HpyCH4IV	ACGT	3 cut(s)	173, 2075, 2140
HpyF10VI	GCNNNNNNNGC	7 cut(s)	31, 118, 152, 190, 487, 705, 1998
HpyF3I	CTNAG	7 cut(s)	590, 639, 947, 1181, 1284, 1458, 2148
HpySE526I	ACGT	3 cut(s)	173, 2075, 2140
Hsp92I	GRCGYC	2 cut(s)	38, 2075
Hsp92II	CATG	4 cut(s)	1383, 1721, 1955, 2084
HspAI	GCGC	1 cut(s)	23
KflI	GGGWCCC	1 cut(s)	1534
Kpn2I	TCCGGA	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	1858
LguI	GCTCTTC	1 cut(s)	249
LmnI	GCTCC	4 cut(s)	78, 670, 808, 1252
Lsp1109I	GCAGC	5 cut(s)	133, 193, 274, 396, 399
LweI	GCATC	4 cut(s)	853, 1596, 1636, 2155
MaeI	CTAG	7 cut(s)	762, 840, 933, 1502, 1530, 1731, 2205
MaeII	ACGT	3 cut(s)	173, 2075, 2140
MaeIII	GTNAC	4 cut(s)	17, 169, 1561, 1825
MfeI	CAATTG	1 cut(s)	1661
MflI	RGATCY	6 cut(s)	1417, 1461, 1480, 1555, 1886, 2062
MhlI	GDGCHC	3 cut(s)	164, 813, 955
MluI	ACGCGT	1 cut(s)	1523
MlyI	GAGTC	4 cut(s)	439, 557, 1031, 1710
MmeI	TCCRAC	2 cut(s)	243, 651
Mph1103I	ATGCAT	2 cut(s)	1589, 2057
MroI	TCCGGA	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	1 cut(s)	1449
MspA1I	CMGCKG	3 cut(s)	980, 1774, 2147
MspI	CCGG	7 cut(s)	6, 35, 399, 545, 743, 786, 2041
MspR9I	CCNGG	7 cut(s)	101, 283, 399, 525, 744, 787, 2087
MunI	CAATTG	1 cut(s)	1661
Mva1269I	GAATGC	1 cut(s)	1812
MvaI	CCWGG	4 cut(s)	101, 283, 525, 2087
MvnI	CGCG	3 cut(s)	23, 651, 1525
MwoI	GCNNNNNNNGC	7 cut(s)	31, 118, 152, 190, 487, 705, 1998
NaeI	GCCGGC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	399, 744, 787
NcoI	CCATGG	1 cut(s)	1717
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	1383, 1721, 1955, 2084
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	3 cut(s)	17, 1561, 1825
NsiI	ATGCAT	2 cut(s)	1589, 2057
PagI	TCATGA	1 cut(s)	1951
PciSI	GCTCTTC	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 144, 449
PctI	GAATGC	1 cut(s)	1812
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	7 cut(s)	187, 268, 662, 677, 782, 1148, 1268
PflMI	CCANNNNNTGG	2 cut(s)	980, 2086
PfoI	TCCNGGA	1 cut(s)	785
PleI	GAGTC	4 cut(s)	439, 556, 1030, 1709
PpsI	GAGTC	4 cut(s)	439, 556, 1030, 1709
PpuMI	RGGWCCY	1 cut(s)	1534
Psp1406I	AACGTT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	1534
Psp6I	CCWGG	4 cut(s)	99, 281, 523, 2085
PspGI	CCWGG	4 cut(s)	99, 281, 523, 2085
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	9 cut(s)	82, 160, 161, 285, 604, 943, 971, 1534, 1686
PspPPI	RGGWCCY	1 cut(s)	1534
PstI	CTGCAG	1 cut(s)	483
PsuI	RGATCY	6 cut(s)	1417, 1461, 1480, 1555, 1886, 2062
RsaI	GTAC	2 cut(s)	1202, 1512
RsaNI	GTAC	2 cut(s)	1201, 1511
SapI	GCTCTTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	1449
Sau96I	GGNCC	9 cut(s)	82, 160, 161, 285, 604, 943, 971, 1534, 1686
SchI	GAGTC	4 cut(s)	439, 557, 1031, 1710
ScrFI	CCNGG	7 cut(s)	101, 283, 399, 525, 744, 787, 2087
SduI	GDGCHC	3 cut(s)	164, 813, 955
SfaNI	GCATC	4 cut(s)	853, 1596, 1636, 2155
SfcI	CTRYAG	2 cut(s)	479, 1830
SinI	GGWCC	3 cut(s)	604, 971, 1534
SmlI	CTYRAG	2 cut(s)	506, 1100
SmoI	CTYRAG	2 cut(s)	506, 1100
SspMI	CTAG	7 cut(s)	762, 840, 933, 1502, 1530, 1731, 2205
StyD4I	CCNGG	7 cut(s)	99, 281, 397, 523, 742, 785, 2085
StyI	CCWWGG	2 cut(s)	761, 1717
TaaI	ACNGT	6 cut(s)	133, 169, 836, 1473, 1831, 1969
TaiI	ACGT	3 cut(s)	176, 2078, 2143
TaqII	GACCGA	1 cut(s)	1813
TatI	WGTACW	1 cut(s)	1510
TfiI	GAWTC	7 cut(s)	187, 268, 662, 677, 782, 1148, 1268
Tru1I	TTAA	1 cut(s)	1449
Tru9I	TTAA	1 cut(s)	1449
TscAI	CASTG	3 cut(s)	955, 1570, 1834
TseFI	GTSAC	3 cut(s)	17, 1561, 1825
TseI	GCWGC	5 cut(s)	121, 181, 262, 384, 387
Tsp45I	GTSAC	3 cut(s)	17, 1561, 1825
TspDTI	ATGAA	5 cut(s)	624, 1046, 1122, 1380, 1722
TspGWI	ACGGA	3 cut(s)	1127, 1966, 2055
TspRI	CASTG	3 cut(s)	955, 1570, 1834
Van91I	CCANNNNNTGG	2 cut(s)	980, 2086
VneI	GTGCAC	1 cut(s)	951
VpaK11BI	GGWCC	3 cut(s)	604, 971, 1534
XagI	CCTNNNNNAGG	1 cut(s)	765
XapI	RAATTY	8 cut(s)	56, 622, 655, 845, 915, 1033, 1260, 1880
XbaI	TCTAGA	1 cut(s)	1501
XmaJI	CCTAGG	1 cut(s)	761
XmiI	GTMKAC	3 cut(s)	1756, 1866, 2100
XspI	CTAG	7 cut(s)	762, 840, 933, 1502, 1530, 1731, 2205
ZraI	GACGTC	1 cut(s)	2076
Zsp2I	ATGCAT	2 cut(s)	1589, 2057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.