Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Forward (+)

44241384 .. 44246488

Gene Structure 5105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG232700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2007 bp

ATGGCCGGTGGCGGAGGTGACGCGCCGCCTCTGCCGGCGTCTAACGGCGGCGGCGAATTCCTCCTCTCCTTGCTCCAGAAGGCCCCGCACCACCACTACCAGGGACGCTCGCCCCAACCACAGCAATCTACGGTGATCGATCCCGCCGTGGCCGCCGTGGGCCCCACCGTAACGTTCCAGCAGCAGATTCAGCCGCCGTGGGGATCGTCGTCGTCGTCATCCAACGGCCGAGATCATCCTCCTGCTCTTCACCCCCACCATCAGCAGCAGATTCCGAACCCTTCCTGGCCCAATTCCCAATCTCCTCCTCCTCCTGTCAACTTCCGAGGGTTTCCTCAAAACCCTTACTCCTCTCCTCTCACGCCCAACCACTTCCCCCAGTTCGGCAGCAGCCAATTCCCCGGAAATCAAATCCTCGCCGACGATTTCAGGAAGATTGGGTTTTCGACTCCTCCGAACAATTCCATCCAAGACCTTGCTCTGCAGAAACAGCACCAAGAACAGAAGCTCAAGTTTCGATATTTACCTGGCGATATTATCCGAAATCCGGAGTCGTCAGTAAATGTCATTACTTCCTCTGAAGTTGCCAAGCTCAGTAATGGCTTGGACCGCAATCTCCACTTGAATTCCAACAATTCATCTGAGTTTCGTCGCGGGAATTTCGATTCAGGGGAGCAAGAATCGAGGGGGGGAGGGGTCGGCGGTGGCGGCAGGGGGAAGCAAGTTCGTAGGACAATGCCGCCGCCGGGGTTCGGAAACAAGCCTAGGGGAGGAGGGAATTGGGATTCCGGGAGTAGGAGGGGAGGTATGGAGCACAATGTGGATAGGGAAAGGCAGAGTTCTAGTGAATTTGTGAGGAATAGGGATGCTTCTATTGAGAATGAGAGAGTGAAAAGATTGGGAGGTGAAGATGGTCGAATTCGAGGAAATGGGGCTAGTAGAACGGGGCTCAATGCACAGCTTGATCGCCCTGGTCCACCCGCTGGCACCAATCTCCATTCTGTTTCTGCTTTGGAGATTGAAGAGTCGATGATGAATTTCGAGGATGGGGAGAGGGCAAGAAAGGATAGTGGCGGCGGTGAAGATGTAAGCCAACACTTGCTTGAGGATGAAACGGATGACAAGAATGAGGCAAAGCAACACCATAAGGATTCGAGATCAGATAACAGAGGACAACACCAACTTAGCCAAAGAGCGAGATCGTACAAAAGACAAACACTGTGTCGCTTTGACATAGACAGACTAAATGCTCCTTTTCTTGAAATTTTTGAATCCTTGATACCAACTGAGGAAGAAAAGGCCAAGCAGAAGCAATTATTGACATTATTGGAGAATATAATCTGCAAAGAATGGCCTGAAGCTCGCCTTTATATTTATGGATCATGTGGCAATTCATTTGGAGTTTCTAAAAGTGATATAGATCTCTGTCTGGTGATTGGTGAAGAAGATATTAACAAATCTGAGATCTTACTACGGTTGGCAGATCTTTTGCAGTCAGACAATCTAGAGAATGTACAGGCATTGACGCGTGCTAGGGTCCCCATAGTAAAGCTTATGGATCCTGTCACTGGAATATCTTGTGATATATGCATCAACAATGTTCTGGCTGTGGTAAATACAAAGCTTCTTCGTGATTATGCAAATATAGATGCAAGATTACGACAATTGGCTTTTATTGTGAAACATTGGGCCAAGTCGAGAGGAGTCAATGAAACTTACCATGGAACCCTATCTAGCTATGCGTATGTTTTGATGTGTATACATTTCTTACAACAGCGGAGACCTGCTATTCTTCCCTGTTTACAGGGAATGCGGGCAACATACTCGGTCACTGTAGAGAACATTGAATGTGCTTTCTTTGATCAAGTAGACAAACTTCAAGAATTTGGATCCCATAACAGGGAAACTATTGCTGAACTTGTGTGGGCTTTTTTCAATTACTGGGCATATAGTCATGATTACGCAAATACTGTTATATCCGTTCGTAGAGGAAGCACAATCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

668

Amino Acids

74.28

Weight (kDa)

7.07

Isoelectric Point (pI)

60.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	419 - 547	6.9e-33	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TUTase	PF19088	424 - 529	1.3e-09	TUTase nucleotidyltransferase domain
PAP_assoc	PF03828	637 - 666	2.4e-06	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1792
AccB1I	GGYRCC	1 cut(s)	986
AccB7I	CCANNNNNTGG	1 cut(s)	983
AccI	GTMKAC	2 cut(s)	1759, 1869
AccII	CGCG	3 cut(s)	23, 654, 1528
AccIII	TCCGGA	1 cut(s)	547
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	7 cut(s)	134, 211, 1387, 1553, 1566, 1884, 1897
AcoI	YGGCCR	3 cut(s)	3, 150, 226
AcsI	RAATTY	8 cut(s)	56, 625, 658, 848, 918, 1036, 1263, 1883
AcuI	CTGAAG	2 cut(s)	600, 1377
AcyI	GRCGYC	1 cut(s)	38
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	2 cut(s)	1205, 1515
AflIII	ACRYGT	1 cut(s)	1526
AgsI	TTSAA	7 cut(s)	625, 1022, 1262, 1271, 1847, 1880, 1936
AjnI	CCWGG	4 cut(s)	99, 284, 526, 970
AluBI	AGCT	7 cut(s)	508, 592, 961, 1361, 1552, 1624, 1737
AluI	AGCT	7 cut(s)	508, 592, 961, 1361, 1552, 1624, 1737
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	1774
AlwI	GGATC	7 cut(s)	134, 211, 1387, 1553, 1566, 1884, 1897
Aor13HI	TCCGGA	1 cut(s)	547
AoxI	GGCC	9 cut(s)	3, 81, 150, 160, 226, 287, 1299, 1352, 1689
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	181, 265, 387, 390
ApoI	RAATTY	8 cut(s)	56, 625, 658, 848, 918, 1036, 1263, 1883
ArsI	GACNNNNNNTTYG	2 cut(s)	1207, 1239
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	8 cut(s)	82, 160, 161, 288, 607, 974, 1537, 1689
AsuC2I	CCSGG	3 cut(s)	402, 747, 790
AsuHPI	GGTGA	7 cut(s)	29, 145, 242, 917, 1091, 1444, 1451
AvaII	GGWCC	3 cut(s)	607, 974, 1537
AvrII	CCTAGG	1 cut(s)	764
BaeGI	GKGCMC	1 cut(s)	164
BamHI	GGATCC	2 cut(s)	1558, 1889
BanI	GGYRCC	1 cut(s)	986
BanII	GRGCYC	2 cut(s)	164, 951
BarI	GAAGNNNNNNTAC	2 cut(s)	1860, 1892
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	4 cut(s)	193, 277, 399, 402
BccI	CCATC	4 cut(s)	267, 473, 905, 1040
BceAI	ACGGC	5 cut(s)	61, 131, 140, 181, 241
BcgI	CGANNNNNNTGC	2 cut(s)	1806, 1840
BciT130I	CCWGG	4 cut(s)	101, 286, 528, 972
BclI	TGATCA	1 cut(s)	1861
BcnI	CCSGG	3 cut(s)	402, 747, 790
BcoDI	GTCTC	1 cut(s)	1774
BfaI	CTAG	6 cut(s)	765, 843, 936, 1505, 1533, 1734
BfmI	CTRYAG	2 cut(s)	482, 1833
BfuAI	ACCTGC	1 cut(s)	1792
BglII	AGATCT	3 cut(s)	1420, 1464, 1483
BlnI	CCTAGG	1 cut(s)	764
Bme1390I	CCNGG	7 cut(s)	101, 286, 402, 528, 747, 790, 972
Bme18I	GGWCC	3 cut(s)	607, 974, 1537
BmgT120I	GGNCC	8 cut(s)	82, 160, 161, 288, 607, 974, 1537, 1689
BmiI	GGNNCC	9 cut(s)	84, 162, 163, 988, 1538, 1539, 1560, 1726, 1891
BmrFI	CCNGG	7 cut(s)	101, 286, 402, 528, 747, 790, 972
BmrI	ACTGGG	2 cut(s)	373, 1951
BmsI	GCATC	3 cut(s)	856, 1599, 1639
BmuI	ACTGGG	2 cut(s)	373, 1951
BpmI	CTGGAG	1 cut(s)	59
BpuEI	CTTGAG	2 cut(s)	494, 1124
BpuMI	CCSGG	3 cut(s)	402, 747, 790
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	1 cut(s)	1419
BsaHI	GRCGYC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	1774
BsaWI	WCCGGW	1 cut(s)	547
BsaXI	ACNNNNNCTCC	4 cut(s)	332, 362, 790, 820
Bse118I	RCCGGY	2 cut(s)	5, 34
Bse1I	ACTGG	3 cut(s)	379, 1573, 1946
Bse8I	GATNNNNATC	1 cut(s)	1419
BseAI	TCCGGA	1 cut(s)	547
BseBI	CCWGG	4 cut(s)	101, 286, 528, 972
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	7 cut(s)	218, 235, 465, 871, 1051, 1114, 1123
BseJI	GATNNNNATC	1 cut(s)	1419
BseMII	CTCAG	4 cut(s)	607, 633, 1278, 1452
BseNI	ACTGG	3 cut(s)	379, 1573, 1946
BseRI	GAGGAG	9 cut(s)	53, 294, 297, 300, 340, 345, 441, 786, 1716
BseSI	GKGCMC	1 cut(s)	164
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	4 cut(s)	193, 277, 399, 402
Bsh1236I	CGCG	3 cut(s)	23, 654, 1528
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	9 cut(s)	5, 83, 152, 162, 228, 289, 1301, 1354, 1691
BshNI	GGYRCC	1 cut(s)	986
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	816
BsiSI	CCGG	6 cut(s)	6, 35, 402, 548, 746, 789
BslFI	GGGAC	2 cut(s)	117, 1523
BsmAI	GTCTC	1 cut(s)	1774
BsmFI	GGGAC	2 cut(s)	117, 1523
BsmI	GAATGC	1 cut(s)	1815
BsnI	GGCC	9 cut(s)	5, 83, 152, 162, 228, 289, 1301, 1354, 1691
Bso31I	GGTCTC	1 cut(s)	1774
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 816, 951
Bsp13I	TCCGGA	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	1513
Bsp19I	CCATGG	1 cut(s)	1720
BspANI	GGCC	9 cut(s)	5, 83, 152, 162, 228, 289, 1301, 1354, 1691
BspCNI	CTCAG	4 cut(s)	606, 634, 1279, 1453
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	547
BspFNI	CGCG	3 cut(s)	23, 654, 1528
BspHI	TCATGA	1 cut(s)	1954
BspLI	GGNNCC	9 cut(s)	84, 162, 163, 988, 1538, 1539, 1560, 1726, 1891
BspMAI	CTGCAG	1 cut(s)	486
BspMI	ACCTGC	1 cut(s)	1792
BspPI	GGATC	7 cut(s)	134, 211, 1387, 1553, 1566, 1884, 1897
BspQI	GCTCTTC	1 cut(s)	252
BspT107I	GGYRCC	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	1774
BsrFI	RCCGGY	2 cut(s)	5, 34
BsrGI	TGTACA	1 cut(s)	1513
BsrI	ACTGG	3 cut(s)	379, 1573, 1946
BssAI	RCCGGY	2 cut(s)	5, 34
BssNAI	GTATAC	1 cut(s)	1760
BssNI	GRCGYC	1 cut(s)	38
BssT1I	CCWWGG	2 cut(s)	764, 1720
Bst1107I	GTATAC	1 cut(s)	1760
Bst2UI	CCWGG	4 cut(s)	101, 286, 528, 972
Bst4CI	ACNGT	6 cut(s)	133, 169, 1221, 1476, 1834, 1972
Bst6I	CTCTTC	2 cut(s)	252, 1017
BstACI	GRCGYC	1 cut(s)	38
BstAUI	TGTACA	1 cut(s)	1513
BstC8I	GCNNGC	6 cut(s)	36, 110, 985, 1363, 1530, 1815
BstDEI	CTNAG	5 cut(s)	593, 642, 1184, 1287, 1461
BstDSI	CCRYGG	4 cut(s)	147, 156, 197, 1720
BstENI	CCTNNNNNAGG	1 cut(s)	768
BstF5I	GGATG	7 cut(s)	218, 235, 465, 871, 1051, 1114, 1123
BstFNI	CGCG	3 cut(s)	23, 654, 1528
BstHHI	GCGC	1 cut(s)	25
BstMAI	GTCTC	1 cut(s)	1774
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 152, 190, 490, 609, 708
BstNI	CCWGG	4 cut(s)	101, 286, 528, 972
BstSCI	CCNGG	7 cut(s)	99, 284, 400, 526, 745, 788, 970
BstSFI	CTRYAG	2 cut(s)	482, 1833
BstSLI	GKGCMC	1 cut(s)	164
BstUI	CGCG	3 cut(s)	23, 654, 1528
BstV1I	GCAGC	4 cut(s)	193, 277, 399, 402
BstX2I	RGATCY	5 cut(s)	1420, 1464, 1483, 1558, 1889
BstYI	RGATCY	5 cut(s)	1420, 1464, 1483, 1558, 1889
BstZ17I	GTATAC	1 cut(s)	1760
BstZI	CGGCCG	1 cut(s)	226
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	9 cut(s)	5, 83, 152, 162, 228, 289, 1301, 1354, 1691
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	4 cut(s)	147, 156, 197, 1720
BtsCI	GGATG	7 cut(s)	218, 235, 465, 871, 1051, 1114, 1123
BtsIMutI	CAGTG	3 cut(s)	1217, 1566, 1830
BveI	ACCTGC	1 cut(s)	1792
Cac8I	GCNNGC	6 cut(s)	36, 110, 985, 1363, 1530, 1815
CciI	TCATGA	1 cut(s)	1954
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	2 cut(s)	5, 34
Cfr13I	GGNCC	8 cut(s)	82, 160, 161, 288, 607, 974, 1537, 1689
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	4 cut(s)	27, 29, 114, 1534
Csp6I	GTAC	2 cut(s)	1204, 1514
CviAII	CATG	3 cut(s)	1383, 1721, 1955
CviQI	GTAC	2 cut(s)	1204, 1514
DdeI	CTNAG	5 cut(s)	593, 642, 1184, 1287, 1461
DraIII	CACNNNGTG	1 cut(s)	820
EaeI	YGGCCR	3 cut(s)	3, 150, 226
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	252, 1017
EarI	CTCTTC	2 cut(s)	252, 1017
EciI	GGCGGA	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	226
Eco130I	CCWWGG	2 cut(s)	764, 1720
Eco24I	GRGCYC	2 cut(s)	164, 951
Eco31I	GGTCTC	1 cut(s)	1774
Eco47I	GGWCC	3 cut(s)	607, 974, 1537
Eco52I	CGGCCG	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	600, 1377
EcoNI	CCTNNNNNAGG	1 cut(s)	768
EcoO109I	RGGNCCY	3 cut(s)	82, 161, 1537
EcoRI	GAATTC	3 cut(s)	56, 625, 918
EcoRII	CCWGG	4 cut(s)	99, 284, 526, 970
EcoT14I	CCWWGG	2 cut(s)	764, 1720
EcoT22I	ATGCAT	1 cut(s)	1592
EcoT38I	GRGCYC	2 cut(s)	164, 951
ErhI	CCWWGG	2 cut(s)	764, 1720
FaeI	CATG	3 cut(s)	1386, 1724, 1958
FalI	AAGNNNNNCTT	2 cut(s)	1350, 1382
FaqI	GGGAC	2 cut(s)	117, 1523
FatI	CATG	3 cut(s)	1382, 1720, 1954
FauI	CCCGC	5 cut(s)	93, 151, 647, 988, 1806
FbaI	TGATCA	1 cut(s)	1861
FblI	GTMKAC	2 cut(s)	1759, 1869
FokI	GGATG	7 cut(s)	205, 222, 452, 878, 1058, 1121, 1130
FriOI	GRGCYC	2 cut(s)	164, 951
FspBI	CTAG	6 cut(s)	765, 843, 936, 1505, 1533, 1734
GlaI	GCGC	1 cut(s)	24
GsuI	CTGGAG	1 cut(s)	59
HaeIII	GGCC	9 cut(s)	5, 83, 152, 162, 228, 289, 1301, 1354, 1691
HapII	CCGG	6 cut(s)	6, 35, 402, 548, 746, 789
HgaI	GACGC	4 cut(s)	27, 29, 114, 1534
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	38
Hin1II	CATG	3 cut(s)	1386, 1724, 1958
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HindIII	AAGCTT	2 cut(s)	1550, 1622
HpaII	CCGG	6 cut(s)	6, 35, 402, 548, 746, 789
HphI	GGTGA	7 cut(s)	29, 145, 242, 917, 1091, 1444, 1451
Hpy166II	GTNNAC	5 cut(s)	319, 977, 1760, 1802, 1870
Hpy8I	GTNNAC	5 cut(s)	319, 977, 1760, 1802, 1870
Hpy99I	CGWCG	5 cut(s)	211, 214, 217, 425, 654
HpyAV	CCTTC	2 cut(s)	73, 291
HpyCH4III	ACNGT	6 cut(s)	133, 169, 1221, 1476, 1834, 1972
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	7 cut(s)	484, 956, 1344, 1492, 1590, 1640, 1652
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 152, 190, 490, 609, 708
HpyF3I	CTNAG	5 cut(s)	593, 642, 1184, 1287, 1461
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	38
Hsp92II	CATG	3 cut(s)	1386, 1724, 1958
HspAI	GCGC	1 cut(s)	23
KflI	GGGWCCC	1 cut(s)	1537
Kpn2I	TCCGGA	1 cut(s)	547
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	1861
LguI	GCTCTTC	1 cut(s)	252
LmnI	GCTCC	4 cut(s)	78, 673, 811, 1255
Lsp1109I	GCAGC	4 cut(s)	193, 277, 399, 402
LweI	GCATC	3 cut(s)	856, 1599, 1639
MaeI	CTAG	6 cut(s)	765, 843, 936, 1505, 1533, 1734
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	4 cut(s)	17, 169, 1564, 1828
MfeI	CAATTG	1 cut(s)	1664
MflI	RGATCY	5 cut(s)	1420, 1464, 1483, 1558, 1889
MhlI	GDGCHC	3 cut(s)	164, 816, 951
MluI	ACGCGT	1 cut(s)	1526
MlyI	GAGTC	4 cut(s)	442, 560, 1034, 1713
MmeI	TCCRAC	2 cut(s)	246, 654
Mph1103I	ATGCAT	1 cut(s)	1592
MroI	TCCGGA	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	1 cut(s)	1452
MspA1I	CMGCKG	2 cut(s)	983, 1777
MspI	CCGG	6 cut(s)	6, 35, 402, 548, 746, 789
MspR9I	CCNGG	7 cut(s)	101, 286, 402, 528, 747, 790, 972
MunI	CAATTG	1 cut(s)	1664
Mva1269I	GAATGC	1 cut(s)	1815
MvaI	CCWGG	4 cut(s)	101, 286, 528, 972
MvnI	CGCG	3 cut(s)	23, 654, 1528
MwoI	GCNNNNNNNGC	6 cut(s)	31, 152, 190, 490, 609, 708
NaeI	GCCGGC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	402, 747, 790
NcoI	CCATGG	1 cut(s)	1720
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	3 cut(s)	1386, 1724, 1958
NlaIV	GGNNCC	9 cut(s)	84, 162, 163, 988, 1538, 1539, 1560, 1726, 1891
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	3 cut(s)	17, 1564, 1828
NsiI	ATGCAT	1 cut(s)	1592
PagI	TCATGA	1 cut(s)	1954
PciSI	GCTCTTC	1 cut(s)	252
PcsI	WCGNNNNNNNCGW	4 cut(s)	51, 144, 212, 452
PctI	GAATGC	1 cut(s)	1815
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	7 cut(s)	187, 271, 665, 680, 785, 1151, 1271
PflMI	CCANNNNNTGG	1 cut(s)	983
PfoI	TCCNGGA	1 cut(s)	788
PleI	GAGTC	4 cut(s)	442, 559, 1033, 1712
PpsI	GAGTC	4 cut(s)	442, 559, 1033, 1712
PpuMI	RGGWCCY	1 cut(s)	1537
Psp1406I	AACGTT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	1537
Psp6I	CCWGG	4 cut(s)	99, 284, 526, 970
PspGI	CCWGG	4 cut(s)	99, 284, 526, 970
PspN4I	GGNNCC	9 cut(s)	84, 162, 163, 988, 1538, 1539, 1560, 1726, 1891
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	8 cut(s)	82, 160, 161, 288, 607, 974, 1537, 1689
PspPPI	RGGWCCY	1 cut(s)	1537
PstI	CTGCAG	1 cut(s)	486
PsuI	RGATCY	5 cut(s)	1420, 1464, 1483, 1558, 1889
RsaI	GTAC	2 cut(s)	1205, 1515
RsaNI	GTAC	2 cut(s)	1204, 1514
SapI	GCTCTTC	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	1452
Sau96I	GGNCC	8 cut(s)	82, 160, 161, 288, 607, 974, 1537, 1689
SchI	GAGTC	4 cut(s)	442, 560, 1034, 1713
ScrFI	CCNGG	7 cut(s)	101, 286, 402, 528, 747, 790, 972
SduI	GDGCHC	3 cut(s)	164, 816, 951
SfaNI	GCATC	3 cut(s)	856, 1599, 1639
SfcI	CTRYAG	2 cut(s)	482, 1833
SinI	GGWCC	3 cut(s)	607, 974, 1537
SmlI	CTYRAG	2 cut(s)	509, 1103
SmoI	CTYRAG	2 cut(s)	509, 1103
SspMI	CTAG	6 cut(s)	765, 843, 936, 1505, 1533, 1734
StyD4I	CCNGG	7 cut(s)	99, 284, 400, 526, 745, 788, 970
StyI	CCWWGG	2 cut(s)	764, 1720
TaaI	ACNGT	6 cut(s)	133, 169, 1221, 1476, 1834, 1972
TaiI	ACGT	1 cut(s)	176
TaqII	GACCGA	1 cut(s)	1816
TatI	WGTACW	1 cut(s)	1513
TauI	GCSGC	9 cut(s)	28, 51, 54, 155, 196, 711, 742, 745, 1077
TfiI	GAWTC	7 cut(s)	187, 271, 665, 680, 785, 1151, 1271
Tru1I	TTAA	1 cut(s)	1452
Tru9I	TTAA	1 cut(s)	1452
TscAI	CASTG	3 cut(s)	1224, 1573, 1837
TseFI	GTSAC	3 cut(s)	17, 1564, 1828
TseI	GCWGC	4 cut(s)	181, 265, 387, 390
Tsp45I	GTSAC	3 cut(s)	17, 1564, 1828
TspDTI	ATGAA	5 cut(s)	627, 1049, 1125, 1383, 1725
TspGWI	ACGGA	2 cut(s)	1130, 1969
TspRI	CASTG	3 cut(s)	1224, 1573, 1837
Van91I	CCANNNNNTGG	1 cut(s)	983
VpaK11BI	GGWCC	3 cut(s)	607, 974, 1537
XagI	CCTNNNNNAGG	1 cut(s)	768
XapI	RAATTY	8 cut(s)	56, 625, 658, 848, 918, 1036, 1263, 1883
XbaI	TCTAGA	1 cut(s)	1504
XmaJI	CCTAGG	1 cut(s)	764
XmiI	GTMKAC	2 cut(s)	1759, 1869
XspI	CTAG	6 cut(s)	765, 843, 936, 1505, 1533, 1734
Zsp2I	ATGCAT	1 cut(s)	1592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.