Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Forward (+)

31210854 .. 31211593

Gene Structure 740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0218100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGAACAAATAAGAATCCTCAAGGATCTTTACTATGTCAAGGGATTTAAGTGCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGGTATGTTGAGGGTAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAATAGGTGTAATCAGGCTGCTCCAGTGCCCATGAGAACTAGTTCTCTTGGTACTGGTAGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGAGGACAAACATCCCTGCAACAACGAGGAGGAGATCACCAGGAGGTTCAAACTCTTCCTCTGTTCCCCGTGCACGGCGAGGACGTCTTTGGTAACCTGAAGGCTACTTCCGAGGAAGGTAGCGCTTTTGGTTACTATTCTGGTGGCTCAGGCGGTTACCACAGTGGCTCAAACGTTTCTCTTGAGCTCAGCCTAAATCCATCCGGAGCTGCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

175

Amino Acids

19.35

Weight (kDa)

6.9

Isoelectric Point (pI)

42.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	7 - 68	2.9e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	396
AccIII	TCCGGA	1 cut(s)	512
AciI	CCGC	1 cut(s)	462
AclI	AACGTT	1 cut(s)	483
AclWI	GGATC	2 cut(s)	72, 261
AcuI	CTGAAG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	2 cut(s)	22, 259
AfeI	AGCGCT	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	359
AhlI	ACTAGT	1 cut(s)	245
AjnI	CCWGG	2 cut(s)	23, 348
AluBI	AGCT	3 cut(s)	130, 496, 518
AluI	AGCT	3 cut(s)	130, 496, 518
Alw21I	GWGCWC	2 cut(s)	384, 498
Alw26I	GTCTC	1 cut(s)	128
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	2 cut(s)	72, 261
Ama87I	CYCGRG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	512
Aor51HI	AGCGCT	1 cut(s)	433
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	224, 518
Asp700I	GAANNNNTTC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	288
AsuHPI	GGTGA	1 cut(s)	338
AvaI	CYCGRG	1 cut(s)	192
AvaII	GGWCC	1 cut(s)	288
BaeGI	GKGCMC	3 cut(s)	95, 237, 384
BanII	GRGCYC	2 cut(s)	193, 498
BauI	CACGAG	1 cut(s)	113
Bbv12I	GWGCWC	2 cut(s)	384, 498
BbvI	GCAGC	2 cut(s)	211, 505
BccI	CCATC	1 cut(s)	517
BceAI	ACGGC	2 cut(s)	3, 400
BciT130I	CCWGG	2 cut(s)	25, 350
BcoDI	GTCTC	1 cut(s)	128
BcuI	ACTAGT	1 cut(s)	245
BfaI	CTAG	2 cut(s)	246, 526
BfmI	CTRYAG	1 cut(s)	99
BfoI	RGCGCY	1 cut(s)	435
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	2 cut(s)	225, 519
BlpI	GCTNAGC	1 cut(s)	497
BlsI	GCNGC	2 cut(s)	226, 520
Bme1390I	CCNGG	2 cut(s)	25, 350
Bme18I	GGWCC	1 cut(s)	288
BmeT110I	CYCGRG	1 cut(s)	192
BmgT120I	GGNCC	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	176, 289
BmrFI	CCNGG	2 cut(s)	25, 350
BpmI	CTGGAG	4 cut(s)	24, 110, 213, 330
Bpu10I	CCTNAGC	1 cut(s)	457
Bpu1102I	GCTNAGC	1 cut(s)	497
BpuEI	CTTGAG	2 cut(s)	44, 512
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	1 cut(s)	420
BsaWI	WCCGGW	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BseAI	TCCGGA	1 cut(s)	512
BseBI	CCWGG	2 cut(s)	25, 350
BseDI	CCNNGG	1 cut(s)	420
BseGI	GGATG	2 cut(s)	320, 509
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMII	CTCAG	2 cut(s)	471, 511
BseNI	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BseRI	GAGGAG	2 cut(s)	351, 354
BseSI	GKGCMC	3 cut(s)	95, 237, 384
BseXI	GCAGC	2 cut(s)	211, 505
BsiHKAI	GWGCWC	2 cut(s)	384, 498
BsiHKCI	CYCGRG	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	513
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	192
Bsp1286I	GDGCHC	5 cut(s)	95, 193, 237, 384, 498
Bsp13I	TCCGGA	1 cut(s)	512
Bsp143I	GATC	5 cut(s)	64, 117, 266, 274, 343
Bsp1720I	GCTNAGC	1 cut(s)	497
BspACI	CCGC	1 cut(s)	462
BspCNI	CTCAG	2 cut(s)	470, 510
BspEI	TCCGGA	1 cut(s)	512
BspLI	GGNNCC	2 cut(s)	176, 289
BspPI	GGATC	2 cut(s)	72, 261
BsrI	ACTGG	5 cut(s)	136, 230, 265, 298, 307
BssECI	CCNNGG	1 cut(s)	420
BssMI	GATC	5 cut(s)	64, 117, 266, 274, 343
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	113
Bst2BI	CACGAG	1 cut(s)	113
Bst2UI	CCWGG	2 cut(s)	25, 350
Bst4CI	ACNGT	1 cut(s)	473
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	393
BstDEI	CTNAG	2 cut(s)	457, 497
BstEII	GGTNACC	2 cut(s)	401, 464
BstF5I	GGATG	2 cut(s)	320, 509
BstH2I	RGCGCY	1 cut(s)	435
BstHHI	GCGC	1 cut(s)	434
BstKTI	GATC	5 cut(s)	67, 120, 269, 277, 346
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	64, 117, 266, 274, 343
BstNI	CCWGG	2 cut(s)	25, 350
BstPI	GGTNACC	2 cut(s)	401, 464
BstSCI	CCNGG	2 cut(s)	23, 348
BstSFI	CTRYAG	1 cut(s)	99
BstSLI	GKGCMC	3 cut(s)	95, 237, 384
BstV1I	GCAGC	2 cut(s)	211, 505
BstX2I	RGATCY	3 cut(s)	64, 117, 266
BstYI	RGATCY	3 cut(s)	64, 117, 266
BtsCI	GGATG	2 cut(s)	320, 509
BtsIMutI	CAGTG	3 cut(s)	237, 291, 478
CfoI	GCGC	1 cut(s)	434
Cfr13I	GGNCC	1 cut(s)	288
CsiI	ACCWGGT	1 cut(s)	23
Csp6I	GTAC	2 cut(s)	21, 258
CviAII	CATG	1 cut(s)	238
CviQI	GTAC	2 cut(s)	21, 258
DdeI	CTNAG	2 cut(s)	457, 497
DpnI	GATC	5 cut(s)	66, 119, 268, 276, 345
DpnII	GATC	5 cut(s)	64, 117, 266, 274, 343
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Ecl136II	GAGCTC	1 cut(s)	496
Eco24I	GRGCYC	2 cut(s)	193, 498
Eco47I	GGWCC	1 cut(s)	288
Eco47III	AGCGCT	1 cut(s)	433
Eco53kI	GAGCTC	1 cut(s)	496
Eco57I	CTGAAG	1 cut(s)	428
Eco88I	CYCGRG	1 cut(s)	192
Eco91I	GGTNACC	2 cut(s)	401, 464
EcoICRI	GAGCTC	1 cut(s)	496
EcoO65I	GGTNACC	2 cut(s)	401, 464
EcoRII	CCWGG	2 cut(s)	23, 348
EcoT38I	GRGCYC	2 cut(s)	193, 498
FaeI	CATG	1 cut(s)	241
FaiI	YATR	4 cut(s)	75, 141, 147, 239
FatI	CATG	1 cut(s)	237
Fnu4HI	GCNGC	2 cut(s)	225, 519
FokI	GGATG	2 cut(s)	307, 496
FriOI	GRGCYC	2 cut(s)	193, 498
Fsp4HI	GCNGC	2 cut(s)	225, 519
FspBI	CTAG	2 cut(s)	246, 526
GlaI	GCGC	1 cut(s)	433
GluI	GCNGC	2 cut(s)	225, 519
GsuI	CTGGAG	4 cut(s)	24, 110, 213, 330
HaeII	RGCGCY	1 cut(s)	435
HapII	CCGG	1 cut(s)	513
HhaI	GCGC	1 cut(s)	434
Hin1I	GRCGYC	1 cut(s)	393
Hin1II	CATG	1 cut(s)	241
Hin6I	GCGC	1 cut(s)	432
HinP1I	GCGC	1 cut(s)	432
HinfI	GANTC	3 cut(s)	31, 54, 109
HpaII	CCGG	1 cut(s)	513
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	2 cut(s)	291, 382
Hpy188I	TCNGA	1 cut(s)	421
Hpy188III	TCNNGA	6 cut(s)	41, 113, 178, 194, 491, 513
Hpy8I	GTNNAC	2 cut(s)	291, 382
HpyAV	CCTTC	2 cut(s)	403, 419
HpyCH4III	ACNGT	1 cut(s)	473
HpyCH4IV	ACGT	3 cut(s)	183, 393, 483
HpyCH4V	TGCA	2 cut(s)	328, 382
HpyF3I	CTNAG	2 cut(s)	457, 497
HpySE526I	ACGT	3 cut(s)	183, 393, 483
Hsp92I	GRCGYC	1 cut(s)	393
Hsp92II	CATG	1 cut(s)	241
HspAI	GCGC	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	512
Kzo9I	GATC	5 cut(s)	64, 117, 266, 274, 343
LmnI	GCTCC	2 cut(s)	232, 515
Lsp1109I	GCAGC	2 cut(s)	211, 505
MabI	ACCWGGT	1 cut(s)	23
MaeI	CTAG	2 cut(s)	246, 526
MaeII	ACGT	3 cut(s)	183, 393, 483
MaeIII	GTNAC	3 cut(s)	401, 440, 464
MalI	GATC	5 cut(s)	66, 119, 268, 276, 345
MboI	GATC	5 cut(s)	64, 117, 266, 274, 343
MboII	GAAGA	1 cut(s)	356
MflI	RGATCY	3 cut(s)	64, 117, 266
MhlI	GDGCHC	5 cut(s)	95, 193, 237, 384, 498
MluCI	AATT	1 cut(s)	280
MnlI	CCTC	9 cut(s)	68, 145, 305, 329, 332, 346, 378, 382, 415
MroI	TCCGGA	1 cut(s)	512
MroXI	GAANNNNTTC	1 cut(s)	247
MseI	TTAA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	1 cut(s)	513
MspR9I	CCNGG	2 cut(s)	25, 350
MvaI	CCWGG	2 cut(s)	25, 350
NdeII	GATC	5 cut(s)	64, 117, 266, 274, 343
NlaIII	CATG	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	176, 289
PaeR7I	CTCGAG	1 cut(s)	192
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	31, 54, 109
PkrI	GCNGC	2 cut(s)	226, 520
Psp124BI	GAGCTC	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	23, 348
PspEI	GGTNACC	2 cut(s)	401, 464
PspGI	CCWGG	2 cut(s)	23, 348
PspN4I	GGNNCC	2 cut(s)	176, 289
PspPI	GGNCC	1 cut(s)	288
PsuI	RGATCY	3 cut(s)	64, 117, 266
PvuII	CAGCTG	1 cut(s)	130
RsaI	GTAC	2 cut(s)	22, 259
RsaNI	GTAC	2 cut(s)	21, 258
SacI	GAGCTC	1 cut(s)	498
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	2 cut(s)	225, 519
Sau3AI	GATC	5 cut(s)	64, 117, 266, 274, 343
Sau96I	GGNCC	1 cut(s)	288
ScrFI	CCNGG	2 cut(s)	25, 350
SduI	GDGCHC	5 cut(s)	95, 193, 237, 384, 498
SexAI	ACCWGGT	1 cut(s)	23
SfcI	CTRYAG	1 cut(s)	99
Sfr274I	CTCGAG	1 cut(s)	192
SinI	GGWCC	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	192
SmlI	CTYRAG	3 cut(s)	59, 192, 491
SmoI	CTYRAG	3 cut(s)	59, 192, 491
SpeI	ACTAGT	1 cut(s)	245
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	2 cut(s)	246, 526
SstI	GAGCTC	1 cut(s)	498
StyD4I	CCNGG	2 cut(s)	23, 348
TaaI	ACNGT	1 cut(s)	473
TaiI	ACGT	3 cut(s)	186, 396, 486
TaqI	TCGA	1 cut(s)	193
TasI	AATT	1 cut(s)	280
TfiI	GAWTC	3 cut(s)	31, 54, 109
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	237, 298, 478
TseI	GCWGC	2 cut(s)	224, 518
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	3 cut(s)	237, 298, 478
VneI	GTGCAC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	288
XhoI	CTCGAG	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	247
XspI	CTAG	2 cut(s)	246, 526
ZraI	GACGTC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.