Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010253

Physical Location & Seq

Genomic Coordinates Forward (+)

44291573 .. 44296511

Gene Structure 4939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG230600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2211 bp

ATGGCCGGTGGCGGAGGTGACGCGCCGCCTCTGCCGGCGTCTAACGGCGGCGGCGAATTCCTCCTCTCCTTGCTCCAGAAGGCCCTGCACCACCACTACCAGGGACGCTCGCCCCAACCACAGCAATCCTCGGTGATCGATCCCGCCGTGGCCGCCGTGGGCCCCACCGTGGAACGGTTCCAGCAGCAGATTCAGCCGCCGTGGGGATCGTCGTCATCCAACGGCCGAGATCATCCTCCTGCTGTTCACCACCACCATCATCAGCAGATTCCGAACCCTTCCTGGCCAAATTCCCAATCTCCTCCTCCTCCTGTCAACTTCCTAGGGTTTCCTCAAAACCCTTGCTCCTCTCCTCCCACGCCCAACCACTTCCCCCAGTTCGGCAGCAGCCAATTCCCCGGAAATCAAATCCTCGCCGACGATTTCAGGAAGATTGGGTTTTCGACTCCTCCGAACAATTCCATCCAAAACCTTGCTCTGGAGAAACAGCACCAAGAACAGAAGCTCAAGTTTAGATATTTACCTGGCGATATTATCCGAAATCCGGAGTCTTCAGTAAATGCCATTACTTCCTCTGAAGTTGCCAAGCTCAGTAATGGCTTGGACCGCAATCTCCACTTGAATTCCAACAATTCATCTACTTCCAATGAGTTTCGTCGCGCGAATTATGATTCAGGGGAGCAAGAATCAAGAGGCGGCGGCGGCAGGGGGAAGCAAGTTCGTAGGACAATGCCGCCGCCGGGGTTTGGAAACAAGCCTAGGGGAGGAGGGAATTGGGATTCCGGGAGTAGGAGGGGAGGTATGGAGCACAATGTGGATAGGGAAAGGCAGAGTTCTAGTGAATTTGTGAGGAATAGGGATGCTTCTATTGAGAATGAGAGAGTGAAAAGATTGGGAGGTGAAGATGGTCGAATTCGAGGAAATGGGCCTAGTAGAACGGGGTTCAGTGCACAGCTTGATCGCCCTGGTCCACCCGCTGGCACCAATCTCCATTCTGTTTCTGCTTCGGAGATTGAAGAGTCGATGATGAATTTCGAGGATGGGGAGAGGGCAAGAAAGGATAGTGGCGGCGGTGAAGATGTAAGCCAACACTTGCTTGAGGATGAAACGGATGACAAGAATGAGGCAAAGCATCACCATAAGGATTCGAGATCAGATAACAGAGGACAACACCAACTTAGCCAAAGAGCGAGATCGTACAAAAGACAAACACTATGTCGCTTTGACATAGACAGACTAAATGCTCCTTTTCTTGAAATTTTTGAATCCTTGATACCAACTGAGGAAGAAAAGGCCAAGCAGAAGCAATTATTGACATTATTGGAGAATATAATTTGCAAAGAATGGCCTGAAGCTCGCCTTTATATTTATGGATCATGTGGCAATTCATTTGGAGTTTCTAAAAGTGATATAGATCTCTGTCTGGTGATTGGTGAAGAAGATATTAACAAATCTGAGATCTTACTACGGTTGGCAGATCTTTTGCAGTCAGACAATCTAGAGAATGTACAGGCATTGACGCGTGCTAGGGTCCCCATAGTAAAGCTTATGGATCCTGTCACTGGAATATCTTGTGATATATGCATCAACAATGTTCTGGCTGTGGTAAATACAAAGCTTCTTCGTGATTATGCAAATATAGATGCAAGATTACGACAATTGGCTTTTATTGTGAAACATTGGGCCAAGTCGAGAGGAGTCAATGAAACTTACCATGGAACCCTATCTAGCTATGCGTATGTTTTGATGTGTATACATTTCTTACAACAGCGGAGACCTCCTATTCTTCCCTGTTTACAGGGAATGCGGTCAACATACTCGGTCACTGTAGAGAACATTGAATGTGCTTTCTTTGATCAAGTAGACAAACTTCAAGAATTTGGATCCCGTAACAGGGAAACTATTGCTGAACTTGTGTGGGCTTTTTTCAATTACTGGGCATATAGTCATGATTACGCAAATACTGTTATATCCGTTCGTAGAGGAAGCACAATCAGCAAGCGCGAAAAGGACTGGACAAGGAGGATTGGAAATGACCGGCATTTGATATGCATAGAGGATCCGTTTGAGACGTCCCATGACCTGGGACGAGTTGTAGACAAGCACAGCATAAAAGTTTTGAGGGAGGAGTTTGAACGTGCCGCTGAGATAATGCAGTATGATGCAAATCCCTGTGTGAAGCTCTTTGAACCCTATGTTCCTAGTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0005488 GO:0006139 GO:0006378 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010604 GO:0010628 GO:0016070 GO:0016071 GO:0016073 GO:0016074 GO:0016180 GO:0016740 GO:0016772 GO:0016779 GO:0019219 GO:0019222 GO:0031123 GO:0031124 GO:0031126 GO:0031323 GO:0031325 GO:0034470 GO:0034641 GO:0034660 GO:0043144 GO:0043170 GO:0043628 GO:0043629 GO:0043631 GO:0044237 GO:0044238 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050265 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060147 GO:0060148 GO:0060255 GO:0060964 GO:0060966 GO:0060968 GO:0065007 GO:0070569 GO:0070920 GO:0071050 GO:0071076 GO:0071704 GO:0080090 GO:0090065 GO:0090304 GO:0097159 GO:0140098 GO:1900368 GO:1900370 GO:1901360 GO:1901363 GO:1903705

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NTP_transf_2 PAP_assoc

Protein Analysis

736

Amino Acids

82.56

Weight (kDa)

6.71

Isoelectric Point (pI)

59.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTPAP-like_central	PF22600	417 - 545	8e-33	Poly(A) RNA polymerase, mitochondrial-like, central palm domain
TUTase	PF19088	422 - 527	1.6e-09	TUTase nucleotidyltransferase domain
PAP_assoc	PF03828	635 - 693	1.2e-19	Cid1 family poly A polymerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010253)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45620
fragaria_vesca	FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540 FvH4_7g12540
malus_domestica	MD02G1198200.v1.1
prunus_persica	Prupe.2G149800_v2.0.a1 Prupe.2G149800_v2.0.a1
pyrus_communis	pycom02g16180
rosa_chinensis	RchiOBHm_Chr1g0351451
rosa_laevigata	RLG00000028407
rosa_multiflora	Rmu_ssc0000403.1_g000022
rosa_roxburghii	Rroxscaffold_4G00303810
rosa_rugosa	Rorug01G0218100 Rorug01G0218200
rosa_samantha	Rh1AG232700 Rh1BG203700 Rh1CG217400 Rh1DG230600
rosa_wichuraiana	Rw1G020260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	2075
AccB1I	GGYRCC	1 cut(s)	980
AccB7I	CCANNNNNTGG	2 cut(s)	977, 2083
AccI	GTMKAC	3 cut(s)	1753, 1863, 2097
AccII	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
AccIII	TCCGGA	1 cut(s)	544
AclWI	GGATC	9 cut(s)	134, 214, 1381, 1547, 1560, 1878, 1891, 2054, 2067
AcoI	YGGCCR	4 cut(s)	3, 150, 223, 284
AcsI	RAATTY	8 cut(s)	56, 289, 622, 842, 912, 1030, 1257, 1877
AcuI	CTGAAG	3 cut(s)	537, 597, 1371
AcyI	GRCGYC	2 cut(s)	38, 2072
AdeI	CACNNNGTG	1 cut(s)	814
AfaI	GTAC	2 cut(s)	1199, 1509
AflIII	ACRYGT	1 cut(s)	1520
AgsI	TTSAA	9 cut(s)	622, 1016, 1256, 1265, 1841, 1874, 1930, 2135, 2189
AjnI	CCWGG	5 cut(s)	99, 281, 523, 964, 2082
AluBI	AGCT	8 cut(s)	505, 589, 955, 1355, 1546, 1618, 1731, 2182
AluI	AGCT	8 cut(s)	505, 589, 955, 1355, 1546, 1618, 1731, 2182
Alw21I	GWGCWC	2 cut(s)	810, 952
Alw26I	GTCTC	2 cut(s)	1768, 2063
Alw44I	GTGCAC	1 cut(s)	948
AlwI	GGATC	9 cut(s)	134, 214, 1381, 1547, 1560, 1878, 1891, 2054, 2067
Aor13HI	TCCGGA	1 cut(s)	544
ApaI	GGGCCC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	948
ApeKI	GCWGC	3 cut(s)	184, 384, 387
ApoI	RAATTY	8 cut(s)	56, 289, 622, 842, 912, 1030, 1257, 1877
ArsI	GACNNNNNNTTYG	2 cut(s)	1201, 1233
AspA2I	CCTAGG	2 cut(s)	322, 758
AspLEI	GCGC	3 cut(s)	25, 662, 2004
AspS9I	GGNCC	8 cut(s)	82, 160, 161, 604, 926, 968, 1531, 1683
AsuC2I	CCSGG	3 cut(s)	399, 741, 784
AsuHPI	GGTGA	8 cut(s)	29, 145, 239, 911, 1085, 1127, 1438, 1445
AvaII	GGWCC	3 cut(s)	604, 968, 1531
AvrII	CCTAGG	2 cut(s)	322, 758
BaeGI	GKGCMC	2 cut(s)	164, 952
BalI	TGGCCA	1 cut(s)	286
BamHI	GGATCC	3 cut(s)	1552, 1883, 2059
BanI	GGYRCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	1854, 1886
BbsI	GAAGAC	1 cut(s)	543
Bbv12I	GWGCWC	2 cut(s)	810, 952
BbvI	GCAGC	3 cut(s)	196, 396, 399
BccI	CCATC	4 cut(s)	264, 470, 899, 1034
BceAI	ACGGC	5 cut(s)	61, 131, 140, 184, 238
BciT130I	CCWGG	5 cut(s)	101, 283, 525, 966, 2084
BclI	TGATCA	1 cut(s)	1855
BcnI	CCSGG	3 cut(s)	399, 741, 784
BcoDI	GTCTC	2 cut(s)	1768, 2063
BfaI	CTAG	8 cut(s)	323, 759, 837, 930, 1499, 1527, 1728, 2202
BfmI	CTRYAG	1 cut(s)	1827
BglII	AGATCT	3 cut(s)	1414, 1458, 1477
BlnI	CCTAGG	2 cut(s)	322, 758
Bme1390I	CCNGG	8 cut(s)	101, 283, 399, 525, 741, 784, 966, 2084
Bme18I	GGWCC	3 cut(s)	604, 968, 1531
BmgT120I	GGNCC	8 cut(s)	82, 160, 161, 604, 926, 968, 1531, 1683
BmrFI	CCNGG	8 cut(s)	101, 283, 399, 525, 741, 784, 966, 2084
BmrI	ACTGGG	2 cut(s)	370, 1945
BmsI	GCATC	5 cut(s)	850, 1141, 1593, 1633, 2152
BmuI	ACTGGG	2 cut(s)	370, 1945
BpiI	GAAGAC	1 cut(s)	543
BpmI	CTGGAG	2 cut(s)	59, 500
BpuEI	CTTGAG	2 cut(s)	491, 1118
BpuMI	CCSGG	3 cut(s)	399, 741, 784
Bsa29I	ATCGAT	1 cut(s)	138
BsaBI	GATNNNNATC	2 cut(s)	1413, 2166
BsaHI	GRCGYC	2 cut(s)	38, 2072
BsaI	GGTCTC	1 cut(s)	1768
BsaWI	WCCGGW	1 cut(s)	544
BsaXI	ACNNNNNCTCC	4 cut(s)	329, 359, 784, 814
Bse118I	RCCGGY	3 cut(s)	5, 34, 2037
Bse1I	ACTGG	4 cut(s)	376, 1567, 1940, 2018
Bse8I	GATNNNNATC	2 cut(s)	1413, 2166
BseAI	TCCGGA	1 cut(s)	544
BseBI	CCWGG	5 cut(s)	101, 283, 525, 966, 2084
BseCI	ATCGAT	1 cut(s)	138
BseGI	GGATG	7 cut(s)	215, 232, 462, 865, 1045, 1108, 1117
BseJI	GATNNNNATC	2 cut(s)	1413, 2166
BseMII	CTCAG	4 cut(s)	604, 1272, 1446, 2136
BseNI	ACTGG	4 cut(s)	376, 1567, 1940, 2018
BseSI	GKGCMC	2 cut(s)	164, 952
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	3 cut(s)	196, 396, 399
BsgI	GTGCAG	1 cut(s)	71
Bsh1236I	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
Bsh1285I	CGRYCG	1 cut(s)	226
BshNI	GGYRCC	1 cut(s)	980
BshVI	ATCGAT	1 cut(s)	138
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	810, 952
BsiSI	CCGG	7 cut(s)	6, 35, 399, 545, 740, 783, 2038
BslFI	GGGAC	4 cut(s)	117, 1517, 2059, 2100
BsmAI	GTCTC	2 cut(s)	1768, 2063
BsmBI	CGTCTC	1 cut(s)	2063
BsmFI	GGGAC	4 cut(s)	117, 1517, 2059, 2100
BsmI	GAATGC	1 cut(s)	1809
Bso31I	GGTCTC	1 cut(s)	1768
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	3 cut(s)	164, 810, 952
Bsp13I	TCCGGA	1 cut(s)	544
Bsp1407I	TGTACA	1 cut(s)	1507
Bsp19I	CCATGG	1 cut(s)	1714
BspCNI	CTCAG	4 cut(s)	603, 1273, 1447, 2137
BspDI	ATCGAT	1 cut(s)	138
BspEI	TCCGGA	1 cut(s)	544
BspFNI	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
BspHI	TCATGA	1 cut(s)	1948
BspPI	GGATC	9 cut(s)	134, 214, 1381, 1547, 1560, 1878, 1891, 2054, 2067
BspT107I	GGYRCC	1 cut(s)	980
BspTNI	GGTCTC	1 cut(s)	1768
BsrFI	RCCGGY	3 cut(s)	5, 34, 2037
BsrGI	TGTACA	1 cut(s)	1507
BsrI	ACTGG	4 cut(s)	376, 1567, 1940, 2018
BssAI	RCCGGY	3 cut(s)	5, 34, 2037
BssNAI	GTATAC	1 cut(s)	1754
BssNI	GRCGYC	2 cut(s)	38, 2072
BssT1I	CCWWGG	3 cut(s)	322, 758, 1714
Bst1107I	GTATAC	1 cut(s)	1754
Bst2UI	CCWGG	5 cut(s)	101, 283, 525, 966, 2084
Bst4CI	ACNGT	5 cut(s)	169, 177, 1470, 1828, 1966
Bst6I	CTCTTC	1 cut(s)	1011
BstACI	GRCGYC	2 cut(s)	38, 2072
BstAUI	TGTACA	1 cut(s)	1507
BstC8I	GCNNGC	6 cut(s)	36, 110, 979, 1357, 1524, 2000
BstDEI	CTNAG	5 cut(s)	590, 1178, 1281, 1455, 2145
BstDSI	CCRYGG	5 cut(s)	147, 156, 168, 200, 1714
BstENI	CCTNNNNNAGG	1 cut(s)	762
BstF5I	GGATG	7 cut(s)	215, 232, 462, 865, 1045, 1108, 1117
BstFNI	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
BstHHI	GCGC	3 cut(s)	25, 662, 2004
BstMAI	GTCTC	2 cut(s)	1768, 2063
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 152, 193, 606, 702, 1995
BstNI	CCWGG	5 cut(s)	101, 283, 525, 966, 2084
BstSCI	CCNGG	8 cut(s)	99, 281, 397, 523, 739, 782, 964, 2082
BstSFI	CTRYAG	1 cut(s)	1827
BstSLI	GKGCMC	2 cut(s)	164, 952
BstUI	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
BstV1I	GCAGC	3 cut(s)	196, 396, 399
BstV2I	GAAGAC	1 cut(s)	543
BstX2I	RGATCY	6 cut(s)	1414, 1458, 1477, 1552, 1883, 2059
BstYI	RGATCY	6 cut(s)	1414, 1458, 1477, 1552, 1883, 2059
BstZ17I	GTATAC	1 cut(s)	1754
BstZI	CGGCCG	1 cut(s)	223
Bsu15I	ATCGAT	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	138
BtgI	CCRYGG	5 cut(s)	147, 156, 168, 200, 1714
BtsCI	GGATG	7 cut(s)	215, 232, 462, 865, 1045, 1108, 1117
BtsIMutI	CAGTG	3 cut(s)	952, 1560, 1824
Cac8I	GCNNGC	6 cut(s)	36, 110, 979, 1357, 1524, 2000
CciI	TCATGA	1 cut(s)	1948
CfoI	GCGC	3 cut(s)	25, 662, 2004
Cfr10I	RCCGGY	3 cut(s)	5, 34, 2037
Cfr13I	GGNCC	8 cut(s)	82, 160, 161, 604, 926, 968, 1531, 1683
ClaI	ATCGAT	1 cut(s)	138
CseI	GACGC	4 cut(s)	27, 29, 114, 1528
Csp6I	GTAC	2 cut(s)	1198, 1508
CviAII	CATG	4 cut(s)	1377, 1715, 1949, 2078
CviQI	GTAC	2 cut(s)	1198, 1508
DdeI	CTNAG	5 cut(s)	590, 1178, 1281, 1455, 2145
DraIII	CACNNNGTG	1 cut(s)	814
EaeI	YGGCCR	4 cut(s)	3, 150, 223, 284
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	1 cut(s)	1011
EarI	CTCTTC	1 cut(s)	1011
EciI	GGCGGA	1 cut(s)	27
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	3 cut(s)	322, 758, 1714
Eco24I	GRGCYC	1 cut(s)	164
Eco31I	GGTCTC	1 cut(s)	1768
Eco47I	GGWCC	3 cut(s)	604, 968, 1531
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	3 cut(s)	537, 597, 1371
EcoNI	CCTNNNNNAGG	1 cut(s)	762
EcoO109I	RGGNCCY	3 cut(s)	82, 161, 1531
EcoRI	GAATTC	3 cut(s)	56, 622, 912
EcoRII	CCWGG	5 cut(s)	99, 281, 523, 964, 2082
EcoT14I	CCWWGG	3 cut(s)	322, 758, 1714
EcoT22I	ATGCAT	2 cut(s)	1586, 2054
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	3 cut(s)	322, 758, 1714
Esp3I	CGTCTC	1 cut(s)	2063
FaeI	CATG	4 cut(s)	1380, 1718, 1952, 2081
FalI	AAGNNNNNCTT	2 cut(s)	1344, 1376
FaqI	GGGAC	4 cut(s)	117, 1517, 2059, 2100
FatI	CATG	4 cut(s)	1376, 1714, 1948, 2077
FauI	CCCGC	2 cut(s)	151, 982
FbaI	TGATCA	1 cut(s)	1855
FblI	GTMKAC	3 cut(s)	1753, 1863, 2097
FokI	GGATG	7 cut(s)	202, 219, 449, 872, 1052, 1115, 1124
FriOI	GRGCYC	1 cut(s)	164
FspBI	CTAG	8 cut(s)	323, 759, 837, 930, 1499, 1527, 1728, 2202
GlaI	GCGC	3 cut(s)	24, 661, 2003
GsuI	CTGGAG	2 cut(s)	59, 500
HapII	CCGG	7 cut(s)	6, 35, 399, 545, 740, 783, 2038
HgaI	GACGC	4 cut(s)	27, 29, 114, 1528
HhaI	GCGC	3 cut(s)	25, 662, 2004
Hin1I	GRCGYC	2 cut(s)	38, 2072
Hin1II	CATG	4 cut(s)	1380, 1718, 1952, 2081
Hin6I	GCGC	3 cut(s)	23, 660, 2002
HinP1I	GCGC	3 cut(s)	23, 660, 2002
HincII	GTYRAC	2 cut(s)	316, 1812
HindII	GTYRAC	2 cut(s)	316, 1812
HindIII	AAGCTT	2 cut(s)	1544, 1616
HpaII	CCGG	7 cut(s)	6, 35, 399, 545, 740, 783, 2038
HphI	GGTGA	8 cut(s)	29, 145, 239, 911, 1085, 1127, 1438, 1445
Hpy166II	GTNNAC	9 cut(s)	247, 316, 950, 971, 1754, 1796, 1812, 1864, 2098
Hpy188I	TCNGA	8 cut(s)	273, 453, 539, 577, 1009, 1156, 1456, 1492
Hpy8I	GTNNAC	9 cut(s)	247, 316, 950, 971, 1754, 1796, 1812, 1864, 2098
Hpy99I	CGWCG	3 cut(s)	214, 422, 660
HpyAV	CCTTC	2 cut(s)	73, 288
HpyCH4III	ACNGT	5 cut(s)	169, 177, 1470, 1828, 1966
HpyCH4IV	ACGT	2 cut(s)	2072, 2137
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 152, 193, 606, 702, 1995
HpyF3I	CTNAG	5 cut(s)	590, 1178, 1281, 1455, 2145
HpySE526I	ACGT	2 cut(s)	2072, 2137
Hsp92I	GRCGYC	2 cut(s)	38, 2072
Hsp92II	CATG	4 cut(s)	1380, 1718, 1952, 2081
HspAI	GCGC	3 cut(s)	23, 660, 2002
KflI	GGGWCCC	1 cut(s)	1531
Kpn2I	TCCGGA	1 cut(s)	544
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	1855
LmnI	GCTCC	5 cut(s)	78, 350, 679, 805, 1249
Lsp1109I	GCAGC	3 cut(s)	196, 396, 399
LweI	GCATC	5 cut(s)	850, 1141, 1593, 1633, 2152
MaeI	CTAG	8 cut(s)	323, 759, 837, 930, 1499, 1527, 1728, 2202
MaeII	ACGT	2 cut(s)	2072, 2137
MaeIII	GTNAC	4 cut(s)	17, 1558, 1822, 1889
MfeI	CAATTG	1 cut(s)	1658
MflI	RGATCY	6 cut(s)	1414, 1458, 1477, 1552, 1883, 2059
MhlI	GDGCHC	3 cut(s)	164, 810, 952
MlsI	TGGCCA	1 cut(s)	286
MluI	ACGCGT	1 cut(s)	1520
MluNI	TGGCCA	1 cut(s)	286
MlyI	GAGTC	4 cut(s)	439, 557, 1028, 1707
MmeI	TCCRAC	2 cut(s)	243, 651
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	2 cut(s)	1586, 2054
MroI	TCCGGA	1 cut(s)	544
MroNI	GCCGGC	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	1 cut(s)	1446
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	3 cut(s)	977, 1771, 2144
MspI	CCGG	7 cut(s)	6, 35, 399, 545, 740, 783, 2038
MspR9I	CCNGG	8 cut(s)	101, 283, 399, 525, 741, 784, 966, 2084
MunI	CAATTG	1 cut(s)	1658
Mva1269I	GAATGC	1 cut(s)	1809
MvaI	CCWGG	5 cut(s)	101, 283, 525, 966, 2084
MvnI	CGCG	5 cut(s)	23, 660, 662, 1522, 2004
MwoI	GCNNNNNNNGC	6 cut(s)	31, 152, 193, 606, 702, 1995
NaeI	GCCGGC	1 cut(s)	36
NciI	CCSGG	3 cut(s)	399, 741, 784
NcoI	CCATGG	1 cut(s)	1714
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	4 cut(s)	1380, 1718, 1952, 2081
NmeAIII	GCCGAG	1 cut(s)	251
NmuCI	GTSAC	3 cut(s)	17, 1558, 1822
NsiI	ATGCAT	2 cut(s)	1586, 2054
PagI	TCATGA	1 cut(s)	1948
PcsI	WCGNNNNNNNCGW	3 cut(s)	51, 144, 449
PctI	GAATGC	1 cut(s)	1809
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	7 cut(s)	190, 268, 671, 686, 779, 1145, 1265
PflMI	CCANNNNNTGG	2 cut(s)	977, 2083
PfoI	TCCNGGA	1 cut(s)	782
PleI	GAGTC	4 cut(s)	439, 556, 1027, 1706
PpsI	GAGTC	4 cut(s)	439, 556, 1027, 1706
PpuMI	RGGWCCY	1 cut(s)	1531
Psp5II	RGGWCCY	1 cut(s)	1531
Psp6I	CCWGG	5 cut(s)	99, 281, 523, 964, 2082
PspGI	CCWGG	5 cut(s)	99, 281, 523, 964, 2082
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	8 cut(s)	82, 160, 161, 604, 926, 968, 1531, 1683
PspPPI	RGGWCCY	1 cut(s)	1531
PsuI	RGATCY	6 cut(s)	1414, 1458, 1477, 1552, 1883, 2059
RsaI	GTAC	2 cut(s)	1199, 1509
RsaNI	GTAC	2 cut(s)	1198, 1508
SaqAI	TTAA	1 cut(s)	1446
Sau96I	GGNCC	8 cut(s)	82, 160, 161, 604, 926, 968, 1531, 1683
SchI	GAGTC	4 cut(s)	439, 557, 1028, 1707
ScrFI	CCNGG	8 cut(s)	101, 283, 399, 525, 741, 784, 966, 2084
SduI	GDGCHC	3 cut(s)	164, 810, 952
SfaNI	GCATC	5 cut(s)	850, 1141, 1593, 1633, 2152
SfcI	CTRYAG	1 cut(s)	1827
SinI	GGWCC	3 cut(s)	604, 968, 1531
SmlI	CTYRAG	2 cut(s)	506, 1097
SmoI	CTYRAG	2 cut(s)	506, 1097
SspMI	CTAG	8 cut(s)	323, 759, 837, 930, 1499, 1527, 1728, 2202
StyD4I	CCNGG	8 cut(s)	99, 281, 397, 523, 739, 782, 964, 2082
StyI	CCWWGG	3 cut(s)	322, 758, 1714
TaaI	ACNGT	5 cut(s)	169, 177, 1470, 1828, 1966
TaiI	ACGT	2 cut(s)	2075, 2140
TaqI	TCGA	8 cut(s)	138, 443, 910, 916, 1022, 1035, 1148, 1691
TaqII	GACCGA	1 cut(s)	1810
TatI	WGTACW	1 cut(s)	1507
TfiI	GAWTC	7 cut(s)	190, 268, 671, 686, 779, 1145, 1265
Tru1I	TTAA	1 cut(s)	1446
Tru9I	TTAA	1 cut(s)	1446
TscAI	CASTG	3 cut(s)	952, 1567, 1831
TseFI	GTSAC	3 cut(s)	17, 1558, 1822
TseI	GCWGC	3 cut(s)	184, 384, 387
Tsp45I	GTSAC	3 cut(s)	17, 1558, 1822
TspDTI	ATGAA	5 cut(s)	624, 1043, 1119, 1377, 1719
TspGWI	ACGGA	3 cut(s)	1124, 1963, 2052
TspRI	CASTG	3 cut(s)	952, 1567, 1831
Van91I	CCANNNNNTGG	2 cut(s)	977, 2083
VneI	GTGCAC	1 cut(s)	948
VpaK11BI	GGWCC	3 cut(s)	604, 968, 1531
XagI	CCTNNNNNAGG	1 cut(s)	762
XapI	RAATTY	8 cut(s)	56, 289, 622, 842, 912, 1030, 1257, 1877
XbaI	TCTAGA	1 cut(s)	1498
XmaJI	CCTAGG	2 cut(s)	322, 758
XmiI	GTMKAC	3 cut(s)	1753, 1863, 2097
XspI	CTAG	8 cut(s)	323, 759, 837, 930, 1499, 1527, 1728, 2202
ZraI	GACGTC	1 cut(s)	2073
Zsp2I	ATGCAT	2 cut(s)	1586, 2054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.