pycom02g22330

ABC transporter I family member 6

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014298
Physical Location & Seq
Forward (+)
20461952 .. 20464154
2203 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1026 bp
ATGGCGCTGTTGCGATTCCATCATCCATGTACGCTTCCCGCCCAACTACCACCATCCCCACTGCAATCTTCTTCTTCTTCTGCTACTTGTCTTGTTAGCGGCTATTCACCCTCCAAGTCCCCAGTATGTACAGGTTCTGCCCTCCGCCCCCTCTGTTGGCCATCACGCCACTGGCAGCTGCGGTCTCTGACGGCGGTGAAGGTGAAGGTGAAAGGTAGCCTCTCCTCCGCCGCGGAAAGTTCAGTTTCCAGCAGTAGAGGAGGGGAAGGAGAGAAGGAGCTGCTACTCCAAGTTGAGGATCTAACGGCCGTGATTGCCGAATCCAAACAGCAGATTCTCAAGGGCGTCAACCTCTCTGTCTACCAAGGGGAGGTTCATGCTATTATGGGAAAGAACGGTTCAGGGAAGAGCACTTTCGCCAAGGTTCTGGCTGGGCATCCGGAATACCAAGTTACCGGAGGTAGTGTTGTGTTTAAAGGGGAAAACTTGCTTGAAATGCCAGCGGAAGACCGGTCACTTGCGGGGCTTTTTATGAGTTTCCAGTCCCCAGTTGAGATCCCTGGTGTCACCAACATTGATTTTCTCAACATGGCGTACAATGCTCGCAGAAAGAAACTAGGACTGCCCGAGCTTGGACCGATTGAGTTCTATGCTTATATTTTTCCCAAACTTGATCTTATCAACATGAAGACGGACTTCCTTAATCGAAATGTTAATGAAGGCTTCAGTGGAGGTGAAAAGAAGCGCAATGAGATTTTGCAACTGGCGGTTTTGGGAGCAGAGTTGTCTATTTTGGATGAAATTGATTCTGGGCTGGATGTCGATGCACTTCGAGATGTAGCAAAGGCAGTCAATGGGCTTCTGACCCCGACAAATTCTGTATTGATGATTACTCATTACCTACGACTTCTGGAATTTATAAAGCCAACATGTATCCATATTATGGAGGATGGGAAAATTATAAAGACAGGTGACATCTCCTTAGCAGAAGTACTAGAGAAGGAAGGGTACAAAGCAATTTCTTGA

Protein Analysis

342

Amino Acids

36.93

Weight (kDa)

6.67

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 113 - 267 1.8e-20 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014298)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G10670
fragaria_vesca FvH4_4g11580
malus_domestica MD02G1261200.v1.1 MD07G1059800.v1.1
pyrus_communis pycom02g22330
rosa_chinensis RchiOBHm_Chr6g0244501
rosa_laevigata RLG00000015353
rosa_multiflora Rmu_co8367795.1_g000001 Rmu_sc0000633.1_g000018 Rmu_sc0003679.1_g000019
rosa_roxburghii Rroxscaffold_7G00215790
rosa_rugosa Rorug05G0509200
rosa_samantha Rh6AG024600 Rh6BG019600 Rh6CG017200 Rh6DG018200
rosa_wichuraiana Rw6G001990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 920, 962
AccB7I CCANNNNNTGG 1 cut(s) 943
AccI GTMKAC 1 cut(s) 360
AccII CGCG 1 cut(s) 233
AccIII TCCGGA 1 cut(s) 439
AclWI GGATC 2 cut(s) 306, 550
AcoI YGGCCR 2 cut(s) 158, 306
AcsI RAATTY 2 cut(s) 874, 914
AcuI CTGAAG 1 cut(s) 709
AcyI GRCGYC 1 cut(s) 345
AfaI GTAC 5 cut(s) 31, 130, 596, 993, 1010
AfiI CCNNNNNNNGG 5 cut(s) 156, 295, 370, 632, 943
AflIII ACRYGT 1 cut(s) 929
AgeI ACCGGT 1 cut(s) 510
AgsI TTSAA 1 cut(s) 494
AjnI CCWGG 1 cut(s) 559
AjuI GAANNNNNNNTTGG 2 cut(s) 357, 389
AluBI AGCT 3 cut(s) 178, 280, 631
AluI AGCT 3 cut(s) 178, 280, 631
Alw21I GWGCWC 1 cut(s) 413
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 2 cut(s) 306, 550
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 626
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 2 cut(s) 158, 306
ApeKI GCWGC 3 cut(s) 175, 178, 280
ApoI RAATTY 2 cut(s) 874, 914
AsiGI ACCGGT 1 cut(s) 510
AspLEI GCGC 2 cut(s) 7, 747
AspS9I GGNCC 1 cut(s) 635
AsuHPI GGTGA 7 cut(s) 99, 208, 214, 220, 559, 746, 983
AvaI CYCGRG 1 cut(s) 626
AvaII GGWCC 1 cut(s) 635
BalI TGGCCA 1 cut(s) 160
BarI GAAGNNNNNNTAC 2 cut(s) 992, 1024
BbsI GAAGAC 2 cut(s) 513, 695
Bbv12I GWGCWC 1 cut(s) 413
BbvI GCAGC 3 cut(s) 165, 187, 267
BccI CCATC 4 cut(s) 27, 61, 169, 944
BceAI ACGGC 3 cut(s) 207, 293, 321
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 944
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 617, 995
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 944
BisI GCNGC 5 cut(s) 100, 176, 179, 231, 281
BlsI GCNGC 5 cut(s) 101, 177, 180, 232, 282
BmcAI AGTACT 1 cut(s) 993
Bme1390I CCNGG 1 cut(s) 561
Bme18I GGWCC 1 cut(s) 635
BmeT110I CYCGRG 1 cut(s) 626
BmgT120I GGNCC 1 cut(s) 635
BmrFI CCNGG 1 cut(s) 561
BmrI ACTGGG 2 cut(s) 116, 542
BmsI GCATC 2 cut(s) 445, 814
BmuI ACTGGG 2 cut(s) 116, 542
BpiI GAAGAC 2 cut(s) 513, 695
Bpu10I CCTNAGC 1 cut(s) 982
BpuEI CTTGAG 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 345
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 4 cut(s) 231, 364, 420, 559
BsaWI WCCGGW 3 cut(s) 439, 455, 510
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bsc4I CCNNNNNNNGG 5 cut(s) 156, 295, 370, 632, 943
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 5 cut(s) 122, 176, 541, 548, 768
Bse3DI GCAATG 1 cut(s) 754
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 4 cut(s) 231, 364, 420, 559
BseGI GGATG 6 cut(s) 22, 53, 436, 802, 823, 955
BseLI CCNNNNNNNGG 5 cut(s) 156, 295, 370, 632, 943
BseMI GCAATG 1 cut(s) 754
BseNI ACTGG 5 cut(s) 122, 176, 541, 548, 768
BseRI GAGGAG 2 cut(s) 214, 273
BseX3I CGGCCG 1 cut(s) 306
BseXI GCAGC 3 cut(s) 165, 187, 267
BseYI CCCAGC 1 cut(s) 431
Bsh1236I CGCG 1 cut(s) 233
Bsh1285I CGRYCG 1 cut(s) 309
BshFI GGCC 2 cut(s) 160, 308
BshTI ACCGGT 1 cut(s) 510
BsiEI CGRYCG 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 413
BsiHKCI CYCGRG 1 cut(s) 626
BsiSI CCGG 3 cut(s) 440, 456, 511
BslFI GGGAC 2 cut(s) 103, 529
BslI CCNNNNNNNGG 5 cut(s) 156, 295, 370, 632, 943
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 2 cut(s) 103, 529
BsnI GGCC 2 cut(s) 160, 308
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 626
Bsp1286I GDGCHC 1 cut(s) 413
Bsp13I TCCGGA 1 cut(s) 439
Bsp1407I TGTACA 1 cut(s) 128
Bsp143I GATC 3 cut(s) 298, 555, 673
BspANI GGCC 2 cut(s) 160, 308
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 233
BspPI GGATC 2 cut(s) 306, 550
BspQI GCTCTTC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 189
BsrDI GCAATG 1 cut(s) 754
BsrFI RCCGGY 1 cut(s) 510
BsrGI TGTACA 1 cut(s) 128
BsrI ACTGG 5 cut(s) 122, 176, 541, 548, 768
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 4 cut(s) 231, 364, 420, 559
BssMI GATC 3 cut(s) 298, 555, 673
BssNI GRCGYC 1 cut(s) 345
BssT1I CCWWGG 2 cut(s) 364, 420
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 401
BstACI GRCGYC 1 cut(s) 345
BstAUI TGTACA 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 501, 604
BstDEI CTNAG 1 cut(s) 982
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 6 cut(s) 22, 53, 436, 802, 823, 955
BstFNI CGCG 1 cut(s) 233
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 747
BstKTI GATC 3 cut(s) 301, 558, 676
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 3 cut(s) 298, 555, 673
BstMCI CGRYCG 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 314, 496, 599
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 1 cut(s) 933
BstSCI CCNGG 1 cut(s) 559
BstUI CGCG 1 cut(s) 233
BstV1I GCAGC 3 cut(s) 165, 187, 267
BstV2I GAAGAC 2 cut(s) 513, 695
BstX2I RGATCY 2 cut(s) 298, 555
BstXI CCANNNNNNTGG 1 cut(s) 427
BstYI RGATCY 2 cut(s) 298, 555
BstZI CGGCCG 1 cut(s) 306
BsuI GTATCC 1 cut(s) 944
BsuRI GGCC 2 cut(s) 160, 308
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 6 cut(s) 22, 53, 436, 802, 823, 955
BtsI GCAGTG 1 cut(s) 59
BtsIMutI CAGTG 3 cut(s) 59, 169, 733
Cac8I GCNNGC 2 cut(s) 501, 604
CaiI CAGNNNCTG 1 cut(s) 137
CfoI GCGC 2 cut(s) 7, 747
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 635
Cfr42I CCGCGG 1 cut(s) 234
CseI GACGC 1 cut(s) 334
Csp6I GTAC 5 cut(s) 30, 129, 595, 992, 1009
CspAI ACCGGT 1 cut(s) 510
CviAII CATG 5 cut(s) 27, 377, 589, 685, 930
CviQI GTAC 5 cut(s) 30, 129, 595, 992, 1009
DdeI CTNAG 1 cut(s) 982
DpnI GATC 3 cut(s) 300, 557, 675
DpnII GATC 3 cut(s) 298, 555, 673
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 2 cut(s) 158, 306
EagI CGGCCG 1 cut(s) 306
Eam1104I CTCTTC 1 cut(s) 401
EarI CTCTTC 1 cut(s) 401
EciI GGCGGA 2 cut(s) 134, 217
EclXI CGGCCG 1 cut(s) 306
Eco130I CCWWGG 2 cut(s) 364, 420
Eco31I GGTCTC 1 cut(s) 189
Eco47I GGWCC 1 cut(s) 635
Eco52I CGGCCG 1 cut(s) 306
Eco57I CTGAAG 1 cut(s) 709
Eco88I CYCGRG 1 cut(s) 626
EcoRII CCWGG 1 cut(s) 559
EcoT14I CCWWGG 2 cut(s) 364, 420
ErhI CCWWGG 2 cut(s) 364, 420
FaeI CATG 5 cut(s) 30, 380, 592, 688, 933
FalI AAGNNNNNCTT 2 cut(s) 680, 712
FaqI GGGAC 2 cut(s) 103, 529
FatI CATG 5 cut(s) 26, 376, 588, 684, 929
FauI CCCGC 2 cut(s) 46, 514
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 5 cut(s) 100, 176, 179, 231, 281
FokI GGATG 6 cut(s) 9, 40, 423, 809, 830, 962
Fsp4HI GCNGC 5 cut(s) 100, 176, 179, 231, 281
FspBI CTAG 2 cut(s) 617, 995
GlaI GCGC 2 cut(s) 6, 746
GluI GCNGC 5 cut(s) 100, 176, 179, 231, 281
GsaI CCCAGC 1 cut(s) 435
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 160, 308
HapII CCGG 3 cut(s) 440, 456, 511
HgaI GACGC 1 cut(s) 334
HhaI GCGC 2 cut(s) 7, 747
Hin1I GRCGYC 1 cut(s) 345
Hin1II CATG 5 cut(s) 30, 380, 592, 688, 933
Hin6I GCGC 2 cut(s) 5, 745
HinP1I GCGC 2 cut(s) 5, 745
HincII GTYRAC 1 cut(s) 349
HindII GTYRAC 1 cut(s) 349
HinfI GANTC 4 cut(s) 15, 320, 334, 806
HpaII CCGG 3 cut(s) 440, 456, 511
HphI GGTGA 7 cut(s) 99, 208, 214, 220, 559, 746, 983
Hpy166II GTNNAC 2 cut(s) 349, 361
Hpy188I TCNGA 2 cut(s) 189, 864
Hpy188III TCNNGA 4 cut(s) 440, 833, 911, 1023
Hpy8I GTNNAC 2 cut(s) 349, 361
HpyAV CCTTC 7 cut(s) 193, 199, 260, 268, 713, 994, 998
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 3 cut(s) 64, 760, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 496, 599
HpyF3I CTNAG 1 cut(s) 982
Hsp92I GRCGYC 1 cut(s) 345
Hsp92II CATG 5 cut(s) 30, 380, 592, 688, 933
HspAI GCGC 2 cut(s) 5, 745
Kpn2I TCCGGA 1 cut(s) 439
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 3 cut(s) 298, 555, 673
LguI GCTCTTC 1 cut(s) 401
LmnI GCTCC 2 cut(s) 277, 776
Lsp1109I GCAGC 3 cut(s) 165, 187, 267
LweI GCATC 2 cut(s) 445, 814
MaeI CTAG 2 cut(s) 617, 995
MaeIII GTNAC 4 cut(s) 451, 513, 565, 971
MalI GATC 3 cut(s) 300, 557, 675
MboI GATC 3 cut(s) 298, 555, 673
MboII GAAGA 7 cut(s) 60, 63, 66, 69, 418, 518, 700
MflI RGATCY 2 cut(s) 298, 555
MhlI GDGCHC 1 cut(s) 413
MlsI TGGCCA 1 cut(s) 160
MluCI AATT 5 cut(s) 801, 874, 914, 957, 1017
MluNI TGGCCA 1 cut(s) 160
Mox20I TGGCCA 1 cut(s) 160
MroI TCCGGA 1 cut(s) 439
MscI TGGCCA 1 cut(s) 160
MseI TTAA 3 cut(s) 474, 702, 714
Msp20I TGGCCA 1 cut(s) 160
MspA1I CMGCKG 3 cut(s) 178, 233, 503
MspI CCGG 3 cut(s) 440, 456, 511
MspR9I CCNGG 1 cut(s) 561
MvaI CCWGG 1 cut(s) 561
MvnI CGCG 1 cut(s) 233
MwoI GCNNNNNNNGC 3 cut(s) 314, 496, 599
NdeII GATC 3 cut(s) 298, 555, 673
NlaIII CATG 5 cut(s) 30, 380, 592, 688, 933
NmuCI GTSAC 3 cut(s) 513, 565, 971
NspI RCATGY 1 cut(s) 933
PciI ACATGT 1 cut(s) 929
PciSI GCTCTTC 1 cut(s) 401
PfeI GAWTC 4 cut(s) 15, 320, 334, 806
PflMI CCANNNNNTGG 1 cut(s) 943
PinAI ACCGGT 1 cut(s) 510
PkrI GCNGC 5 cut(s) 101, 177, 180, 232, 282
PscI ACATGT 1 cut(s) 929
PsiI TTATAA 2 cut(s) 920, 962
Psp6I CCWGG 1 cut(s) 559
PspFI CCCAGC 1 cut(s) 431
PspGI CCWGG 1 cut(s) 559
PspPI GGNCC 1 cut(s) 635
PstNI CAGNNNCTG 1 cut(s) 137
PsuI RGATCY 2 cut(s) 298, 555
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 5 cut(s) 31, 130, 596, 993, 1010
RsaNI GTAC 5 cut(s) 30, 129, 595, 992, 1009
SacII CCGCGG 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 401
SaqAI TTAA 3 cut(s) 474, 702, 714
SatI GCNGC 5 cut(s) 100, 176, 179, 231, 281
Sau3AI GATC 3 cut(s) 298, 555, 673
Sau96I GGNCC 1 cut(s) 635
ScaI AGTACT 1 cut(s) 993
ScrFI CCNGG 1 cut(s) 561
SduI GDGCHC 1 cut(s) 413
SfaNI GCATC 2 cut(s) 445, 814
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 1 cut(s) 635
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 5 cut(s) 801, 874, 914, 957, 1017
SspMI CTAG 2 cut(s) 617, 995
StyD4I CCNGG 1 cut(s) 559
StyI CCWWGG 2 cut(s) 364, 420
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 3 cut(s) 706, 822, 832
TaqII GACCGA 1 cut(s) 652
TasI AATT 5 cut(s) 801, 874, 914, 957, 1017
TatI WGTACW 2 cut(s) 128, 991
TauI GCSGC 2 cut(s) 102, 233
TfiI GAWTC 4 cut(s) 15, 320, 334, 806
Tru1I TTAA 3 cut(s) 474, 702, 714
Tru9I TTAA 3 cut(s) 474, 702, 714
TscAI CASTG 3 cut(s) 66, 176, 733
TseFI GTSAC 3 cut(s) 513, 565, 971
TseI GCWGC 3 cut(s) 175, 178, 280
Tsp45I GTSAC 3 cut(s) 513, 565, 971
TspDTI ATGAA 4 cut(s) 365, 701, 732, 813
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 3 cut(s) 66, 176, 733
Van91I CCANNNNNTGG 1 cut(s) 943
VpaK11BI GGWCC 1 cut(s) 635
XapI RAATTY 2 cut(s) 874, 914
XceI RCATGY 1 cut(s) 933
XcmI CCANNNNNNNNNTGG 1 cut(s) 168
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 617, 995
ZrmI AGTACT 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.