Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016420

Physical Location & Seq

Genomic Coordinates Reverse (-)

1263148 .. 1263724

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g01730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAAATACTTGACCCATATTTCTAAATTCACAAATTCATCGCATTTTCTCGTTGGTTTTCCCGAGAAACAAACAGCCCAAACCTCCCAAAGTCCTTCAATCCCAAATGGCTCGCACCAAGCAGACTGCCCGCAAGTCCACCGGAGGCAAAGCCCCAAGGAAGCAGCTGGCCACCAAGGCTGCCCGGAAGTCGGCTCCGGCGACCGGGGGAGTGAAGAAACCCCACCGCTTCAGGCCCGGAACTGTGGCGCTGAGGGAGATCGATCAGGAAGTACCAGAAGAGCACTGAGCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.49

Weight (kDa)

8.59

Isoelectric Point (pI)

72.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016420)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g01730
rosa_chinensis	RchiOBHm_Chr3g0491221 RchiOBHm_Chr4g0394681 RchiOBHm_Chr4g0439021
rosa_multiflora	Rmu_sc0005310.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022040 Rroxscaffold_1G00037080 Rroxscaffold_1G00054940 Rroxscaffold_2G00121580 Rroxscaffold_3G00259770 Rroxscaffold_4G00306410 Rroxscaffold_7G00171960
rosa_samantha	Rh1DG072200 Rh5AG364200 Rh7AG454200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	131, 227
AcoI	YGGCCR	1 cut(s)	169
AcsI	RAATTY	2 cut(s)	26, 34
AcuI	CTGAAG	1 cut(s)	215
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	191, 204
AgsI	TTSAA	1 cut(s)	99
AluBI	AGCT	2 cut(s)	167, 291
AluI	AGCT	2 cut(s)	167, 291
Alw21I	GWGCWC	2 cut(s)	286, 293
Ama87I	CYCGRG	1 cut(s)	62
AoxI	GGCC	2 cut(s)	169, 234
ApeKI	GCWGC	2 cut(s)	164, 180
ApoI	RAATTY	2 cut(s)	26, 34
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	1 cut(s)	235
AsuC2I	CCSGG	3 cut(s)	185, 206, 238
AvaI	CYCGRG	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	171
BanII	GRGCYC	1 cut(s)	293
Bbv12I	GWGCWC	2 cut(s)	286, 293
BbvCI	CCTCAGC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	167, 176
BcnI	CCSGG	3 cut(s)	185, 206, 238
BfoI	RGCGCY	1 cut(s)	252
BglI	GCCNNNNNGGC	1 cut(s)	177
BisI	GCNGC	2 cut(s)	165, 181
BlsI	GCNGC	2 cut(s)	166, 182
Bme1390I	CCNGG	3 cut(s)	185, 206, 238
BmeT110I	CYCGRG	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	235
BmiI	GGNNCC	1 cut(s)	196
BmrFI	CCNGG	3 cut(s)	185, 206, 238
Bpu10I	CCTNAGC	1 cut(s)	252
BpuMI	CCSGG	3 cut(s)	185, 206, 238
Bsa29I	ATCGAT	1 cut(s)	262
BsaJI	CCNNGG	3 cut(s)	156, 175, 205
BsaWI	WCCGGW	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 204
BseCI	ATCGAT	1 cut(s)	262
BseDI	CCNNGG	3 cut(s)	156, 175, 205
BseLI	CCNNNNNNNGG	2 cut(s)	191, 204
BseMII	CTCAG	2 cut(s)	243, 278
BseXI	GCAGC	2 cut(s)	167, 176
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	171, 236
BshVI	ATCGAT	1 cut(s)	262
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	2 cut(s)	286, 293
BsiHKCI	CYCGRG	1 cut(s)	62
BsiSI	CCGG	5 cut(s)	142, 185, 198, 205, 238
BslI	CCNNNNNNNGG	2 cut(s)	191, 204
BsnI	GGCC	2 cut(s)	171, 236
BsoBI	CYCGRG	1 cut(s)	62
Bsp1286I	GDGCHC	2 cut(s)	286, 293
Bsp143I	GATC	2 cut(s)	259, 263
BspACI	CCGC	2 cut(s)	131, 227
BspANI	GGCC	2 cut(s)	171, 236
BspCNI	CTCAG	2 cut(s)	244, 279
BspDI	ATCGAT	1 cut(s)	262
BspLI	GGNNCC	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	156, 175, 205
BssMI	GATC	2 cut(s)	259, 263
BssT1I	CCWWGG	2 cut(s)	156, 175
Bst4CI	ACNGT	1 cut(s)	245
Bst6I	CTCTTC	1 cut(s)	274
BstC8I	GCNNGC	3 cut(s)	113, 131, 169
BstDEI	CTNAG	2 cut(s)	252, 287
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	2 cut(s)	262, 266
BstMBI	GATC	2 cut(s)	259, 263
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	183, 204, 236
BstV1I	GCAGC	2 cut(s)	167, 176
Bsu15I	ATCGAT	1 cut(s)	262
BsuRI	GGCC	2 cut(s)	171, 236
BsuTUI	ATCGAT	1 cut(s)	262
BtgZI	GCGATG	1 cut(s)	24
BtsIMutI	CAGTG	1 cut(s)	284
Cac8I	GCNNGC	3 cut(s)	113, 131, 169
CfoI	GCGC	1 cut(s)	251
Cfr13I	GGNCC	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	262
Csp6I	GTAC	1 cut(s)	273
CviJI	RGCY	9 cut(s)	77, 111, 153, 167, 171, 180, 195, 236, 291
CviKI_1	RGCY	9 cut(s)	77, 111, 153, 167, 171, 180, 195, 236, 291
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	252, 287
DpnI	GATC	2 cut(s)	261, 265
DpnII	GATC	2 cut(s)	259, 263
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	156, 175
Eco24I	GRGCYC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	291
Eco57I	CTGAAG	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	291
EcoT14I	CCWWGG	2 cut(s)	156, 175
EcoT38I	GRGCYC	1 cut(s)	293
ErhI	CCWWGG	2 cut(s)	156, 175
FaiI	YATR	1 cut(s)	18
FauI	CCCGC	1 cut(s)	138
Fnu4HI	GCNGC	2 cut(s)	165, 181
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	2 cut(s)	165, 181
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	2 cut(s)	165, 181
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	171, 236
HapII	CCGG	5 cut(s)	142, 185, 198, 205, 238
HhaI	GCGC	1 cut(s)	251
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HpaII	CCGG	5 cut(s)	142, 185, 198, 205, 238
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188III	TCNNGA	3 cut(s)	62, 267, 294
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	1 cut(s)	105
HpyCH4III	ACNGT	1 cut(s)	245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	252, 287
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	2 cut(s)	259, 263
LguI	GCTCTTC	1 cut(s)	274
LmnI	GCTCC	2 cut(s)	200, 296
LpnPI	CCDG	9 cut(s)	153, 155, 198, 211, 218, 218, 251, 252, 289
Lsp1109I	GCAGC	2 cut(s)	167, 176
MalI	GATC	2 cut(s)	261, 265
MboI	GATC	2 cut(s)	259, 263
MboII	GAAGA	2 cut(s)	227, 291
MhlI	GDGCHC	2 cut(s)	286, 293
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	2 cut(s)	26, 34
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	3 cut(s)	94, 138, 247
Mox20I	TGGCCA	1 cut(s)	171
MscI	TGGCCA	1 cut(s)	171
Msp20I	TGGCCA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	167
MspI	CCGG	5 cut(s)	142, 185, 198, 205, 238
MspR9I	CCNGG	3 cut(s)	185, 206, 238
MwoI	GCNNNNNNNGC	1 cut(s)	177
NciI	CCSGG	3 cut(s)	185, 206, 238
NdeII	GATC	2 cut(s)	259, 263
NlaIV	GGNNCC	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	274
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	166, 182
Psp124BI	GAGCTC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	196
PspPI	GGNCC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	293
SapI	GCTCTTC	1 cut(s)	274
SatI	GCNGC	2 cut(s)	165, 181
Sau3AI	GATC	2 cut(s)	259, 263
Sau96I	GGNCC	1 cut(s)	235
ScrFI	CCNGG	3 cut(s)	185, 206, 238
SduI	GDGCHC	2 cut(s)	286, 293
SetI	ASST	3 cut(s)	86, 169, 293
Sse9I	AATT	2 cut(s)	26, 34
SsiI	CCGC	2 cut(s)	131, 227
SstI	GAGCTC	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	183, 204, 236
StyI	CCWWGG	2 cut(s)	156, 175
TaaI	ACNGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	26, 34
TscAI	CASTG	1 cut(s)	291
TseI	GCWGC	2 cut(s)	164, 180
TspDTI	ATGAA	2 cut(s)	17, 27
TspRI	CASTG	1 cut(s)	291
XapI	RAATTY	2 cut(s)	26, 34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.