Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016420

Physical Location & Seq

Genomic Coordinates Reverse (-)

76308411 .. 76309819

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGCAATAACAGCTTGGACTGAGGACCAGCAGCATGAGATGAATATCCATGTAGATCGTGCTACAAATAGACCTGGGATCGAGTCAAAGCACCAGATCACGCTTGAAGCCTCTGGATTCTCGACCCATTTCTCCAGCCCGTCGACCAGGCGACTGAACCCGATCGGAACCTCCCTCGTCCGGCGACTTCACGGTGGCGAACCGGTCATGTTCGATGCGTCTTCTCTTCGTGGTTCCTCCTCTGGTCACGGATCGTCCATGCATGGAGTGAGGAGAGAGAATCGAAGCCCGGAAGCTTCGGGTTTTCCGGCGAAGCTTCTGCAGTTTCCGGCGATCTTCGGGGTTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.62

Weight (kDa)

9.93

Isoelectric Point (pI)

74.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016420)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g01730
rosa_chinensis	RchiOBHm_Chr3g0491221 RchiOBHm_Chr4g0394681 RchiOBHm_Chr4g0439021
rosa_multiflora	Rmu_sc0005310.1_g000034
rosa_roxburghii	Rroxscaffold_1G00022040 Rroxscaffold_1G00037080 Rroxscaffold_1G00054940 Rroxscaffold_2G00121580 Rroxscaffold_3G00259770 Rroxscaffold_4G00306410 Rroxscaffold_7G00171960
rosa_samantha	Rh1DG072200 Rh5AG364200 Rh7AG454200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	143
AclWI	GGATC	2 cut(s)	86, 259
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgeI	ACCGGT	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	73, 146
AluBI	AGCT	3 cut(s)	14, 296, 316
AluI	AGCT	3 cut(s)	14, 296, 316
AlwI	GGATC	2 cut(s)	86, 259
ApeKI	GCWGC	1 cut(s)	31
AsiGI	ACCGGT	1 cut(s)	202
AspS9I	GGNCC	1 cut(s)	25
AsuC2I	CCSGG	1 cut(s)	290
AvaII	GGWCC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	213
BbvI	GCAGC	1 cut(s)	43
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	2 cut(s)	75, 148
BcnI	CCSGG	1 cut(s)	290
BfmI	CTRYAG	1 cut(s)	320
BisI	GCNGC	1 cut(s)	32
BlsI	GCNGC	1 cut(s)	33
Bme1390I	CCNGG	3 cut(s)	75, 148, 290
Bme18I	GGWCC	1 cut(s)	25
BmgT120I	GGNCC	1 cut(s)	25
BmiI	GGNNCC	2 cut(s)	169, 235
BmrFI	CCNGG	3 cut(s)	75, 148, 290
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	118
BpuMI	CCSGG	1 cut(s)	290
BsaBI	GATNNNNATC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	202
Bse8I	GATNNNNATC	1 cut(s)	44
BseBI	CCWGG	2 cut(s)	75, 148
BseDI	CCNNGG	1 cut(s)	74
BseJI	GATNNNNATC	1 cut(s)	44
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	229, 286
BseXI	GCAGC	1 cut(s)	43
Bsh1285I	CGRYCG	1 cut(s)	165
BshTI	ACCGGT	1 cut(s)	202
BsiEI	CGRYCG	1 cut(s)	165
BsiSI	CCGG	5 cut(s)	181, 203, 290, 308, 329
BslI	CCNNNNNNNGG	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
BspCNI	CTCAG	1 cut(s)	13
BspLI	GGNNCC	2 cut(s)	169, 235
BspMAI	CTGCAG	1 cut(s)	324
BspPI	GGATC	2 cut(s)	86, 259
BsrFI	RCCGGY	1 cut(s)	202
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
Bst2UI	CCWGG	2 cut(s)	75, 148
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	231
BstDEI	CTNAG	1 cut(s)	21
BstKTI	GATC	6 cut(s)	58, 81, 99, 165, 254, 336
BstMBI	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
BstMCI	CGRYCG	1 cut(s)	165
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNI	CCWGG	2 cut(s)	75, 148
BstSCI	CCNGG	3 cut(s)	73, 146, 288
BstSFI	CTRYAG	1 cut(s)	320
BstV1I	GCAGC	1 cut(s)	43
BstV2I	GAAGAC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	25
CseI	GACGC	1 cut(s)	207
CspAI	ACCGGT	1 cut(s)	202
CviAII	CATG	6 cut(s)	35, 50, 208, 259, 263, 348
CviJI	RGCY	6 cut(s)	14, 110, 138, 288, 296, 316
CviKI_1	RGCY	6 cut(s)	14, 110, 138, 288, 296, 316
DdeI	CTNAG	1 cut(s)	21
DpnI	GATC	6 cut(s)	57, 80, 98, 164, 253, 335
DpnII	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	73, 146
EcoT22I	ATGCAT	1 cut(s)	264
FaeI	CATG	6 cut(s)	38, 53, 211, 262, 266, 351
FaiI	YATR	6 cut(s)	36, 51, 209, 260, 264, 349
FatI	CATG	6 cut(s)	34, 49, 207, 258, 262, 347
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	32
Fsp4HI	GCNGC	1 cut(s)	32
GluI	GCNGC	1 cut(s)	32
GsuI	CTGGAG	1 cut(s)	118
HapII	CCGG	5 cut(s)	181, 203, 290, 308, 329
HgaI	GACGC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	38, 53, 211, 262, 266, 351
HincII	GTYRAC	1 cut(s)	144
HindII	GTYRAC	1 cut(s)	144
HindIII	AAGCTT	2 cut(s)	294, 314
HinfI	GANTC	3 cut(s)	83, 117, 280
HpaII	CCGG	5 cut(s)	181, 203, 290, 308, 329
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	2 cut(s)	114, 121
Hpy8I	GTNNAC	1 cut(s)	144
Hpy99I	CGWCG	1 cut(s)	145
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	3 cut(s)	262, 322, 347
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	38, 53, 211, 262, 266, 351
Kzo9I	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	6 cut(s)	57, 80, 98, 164, 253, 335
MboI	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
MboII	GAAGA	3 cut(s)	213, 218, 328
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	16, 121, 181, 185, 247, 250, 264
Mph1103I	ATGCAT	1 cut(s)	264
MspI	CCGG	5 cut(s)	181, 203, 290, 308, 329
MspR9I	CCNGG	3 cut(s)	75, 148, 290
MvaI	CCWGG	2 cut(s)	75, 148
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
NlaIII	CATG	6 cut(s)	38, 53, 211, 262, 266, 351
NlaIV	GGNNCC	2 cut(s)	169, 235
NmuCI	GTSAC	1 cut(s)	245
NsiI	ATGCAT	1 cut(s)	264
PfeI	GAWTC	2 cut(s)	117, 280
PinAI	ACCGGT	1 cut(s)	202
PkrI	GCNGC	1 cut(s)	33
Ple19I	CGATCG	1 cut(s)	165
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	73, 146
PspGI	CCWGG	2 cut(s)	73, 146
PspN4I	GGNNCC	2 cut(s)	169, 235
PspPI	GGNCC	1 cut(s)	25
PstI	CTGCAG	1 cut(s)	324
PvuI	CGATCG	1 cut(s)	165
SalI	GTCGAC	1 cut(s)	142
SatI	GCNGC	1 cut(s)	32
Sau3AI	GATC	6 cut(s)	55, 78, 96, 162, 251, 333
Sau96I	GGNCC	1 cut(s)	25
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	3 cut(s)	75, 148, 290
SetI	ASST	5 cut(s)	16, 76, 173, 298, 318
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	25
StyD4I	CCNGG	3 cut(s)	73, 146, 288
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	5 cut(s)	81, 122, 143, 213, 283
TfiI	GAWTC	2 cut(s)	117, 280
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	264
VpaK11BI	GGWCC	1 cut(s)	25
XmiI	GTMKAC	1 cut(s)	143
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.