Rh5AG364200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016420
Physical Location & Seq
Forward (+)
61578261 .. 61583993
5733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG364200.1

Sequence Viewer

Length: 300 bp
ATGGGTGTCGGCGGTACCGGCGGAGCCGCTGTCATCTTGGAGCATCGTATGAGGTCCGGGGAATCTCAGCTCATTGGGTTGGTTGCATTGAGAAGTTTGGAGTGGGTGGAATGTGGAGACGAGAACCACAACTCCGGCTTGACCTTGAAAGACAACTACTTGTCAGAACTTCGTGCAGAGGTTCAGGCGTTCATTACATTGGGTAGAAGGAATTTTTGGTCCGGGACTGTGCAGACTGCTCGATACACACCAGACGCCGGTCGCCTGTTCGATAAACCAGAAAGGCGACTTGTTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.96

Weight (kDa)

6.73

Isoelectric Point (pI)

40.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 14
AccB1I GGYRCC 1 cut(s) 14
AciI CCGC 3 cut(s) 12, 21, 27
AcsI RAATTY 1 cut(s) 211
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 257
AgsI TTSAA 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 199, 231
AloI GAACNNNNNNTCC 2 cut(s) 116, 148
AluBI AGCT 1 cut(s) 70
AluI AGCT 1 cut(s) 70
Alw26I GTCTC 1 cut(s) 111
ApoI RAATTY 1 cut(s) 211
Asp718I GGTACC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 54, 219
AsuC2I CCSGG 2 cut(s) 58, 223
AvaII GGWCC 2 cut(s) 54, 219
BanI GGYRCC 1 cut(s) 14
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BcnI CCSGG 2 cut(s) 58, 223
BcoDI GTCTC 1 cut(s) 111
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 58, 223
Bme18I GGWCC 2 cut(s) 54, 219
BmgT120I GGNCC 2 cut(s) 54, 219
BmiI GGNNCC 2 cut(s) 16, 25
BmrFI CCNGG 2 cut(s) 58, 223
BmsI GCATC 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 258
BpuMI CCSGG 2 cut(s) 58, 223
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 1 cut(s) 57
BsaXI ACNNNNNCTCC 4 cut(s) 15, 45, 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 257
Bse118I RCCGGY 2 cut(s) 17, 257
BseDI CCNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 257
BseMII CTCAG 1 cut(s) 80
BsgI GTGCAG 2 cut(s) 195, 251
Bsh1285I CGRYCG 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 14
BsiEI CGRYCG 1 cut(s) 262
BsiSI CCGG 5 cut(s) 18, 57, 135, 222, 258
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 111
BsmBI CGTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 238
BspACI CCGC 3 cut(s) 12, 21, 27
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 2 cut(s) 16, 25
BspT107I GGYRCC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 17, 257
BssAI RCCGGY 2 cut(s) 17, 257
BssECI CCNNGG 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 229
BstACI GRCGYC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 111
BstMCI CGRYCG 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstPAI GACNNNNGTC 1 cut(s) 258
BstSCI CCNGG 2 cut(s) 56, 221
Cfr10I RCCGGY 2 cut(s) 17, 257
Cfr13I GGNCC 2 cut(s) 54, 219
CseI GACGC 1 cut(s) 263
Csp6I GTAC 1 cut(s) 15
CviJI RGCY 3 cut(s) 26, 70, 138
CviKI_1 RGCY 3 cut(s) 26, 70, 138
CviQI GTAC 1 cut(s) 15
DdeI CTNAG 1 cut(s) 66
EciI GGCGGA 1 cut(s) 36
Eco47I GGWCC 2 cut(s) 54, 219
Esp3I CGTCTC 1 cut(s) 111
FaiI YATR 1 cut(s) 50
FaqI GGGAC 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HapII CCGG 5 cut(s) 18, 57, 135, 222, 258
HgaI GACGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 255
HinfI GANTC 1 cut(s) 62
HpaII CCGG 5 cut(s) 18, 57, 135, 222, 258
Hpy188I TCNGA 1 cut(s) 166
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 229
HpyCH4V TGCA 3 cut(s) 86, 176, 232
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpyF3I CTNAG 1 cut(s) 66
Hsp92I GRCGYC 1 cut(s) 255
KpnI GGTACC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 23, 40
LpnPI CCDG 9 cut(s) 31, 70, 148, 170, 235, 264, 271, 278, 291
LweI GCATC 1 cut(s) 52
MluCI AATT 2 cut(s) 211, 295
MnlI CCTC 2 cut(s) 45, 172
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 5 cut(s) 18, 57, 135, 222, 258
MspR9I CCNGG 2 cut(s) 58, 223
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 2 cut(s) 58, 223
NlaIV GGNNCC 2 cut(s) 16, 25
PfeI GAWTC 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 221
PkrI GCNGC 1 cut(s) 28
PshAI GACNNNNGTC 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 16, 25
PspPI GGNCC 2 cut(s) 54, 219
RsaI GTAC 1 cut(s) 16
RsaNI GTAC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 1 cut(s) 27
Sau96I GGNCC 2 cut(s) 54, 219
ScrFI CCNGG 2 cut(s) 58, 223
SetI ASST 4 cut(s) 56, 72, 146, 183
SfaNI GCATC 1 cut(s) 52
SinI GGWCC 2 cut(s) 54, 219
Sse9I AATT 2 cut(s) 211, 295
SsiI CCGC 3 cut(s) 12, 21, 27
StyD4I CCNGG 2 cut(s) 56, 221
TaaI ACNGT 1 cut(s) 229
TaqI TCGA 2 cut(s) 241, 270
TasI AATT 2 cut(s) 211, 295
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 62
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 181
VpaK11BI GGWCC 2 cut(s) 54, 219
XapI RAATTY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.