Rmu_sc0005310.1_g000034

No description available

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005310.1
Physical Location & Seq
Forward (+)
187448 .. 188865
1418 bp
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UTR
Exon/CDS
Intron
Rmu_sc0005310.1_g000034.1.cds

Sequence Viewer

Length: 360 bp
atggccccctcgcaaatccacccgcggcaaagctatgaggaagcaactcgccaacaaaattgctcagcctcaggttttccggcgaagttcctgcaatttttgggtactcgcggagccgccgtcctccttggtcatcctatgcttctgggagaagtggtgaaagagatgaagaaccagaaggagaagaagtcgagaaggaagatgagagaagaaagagataaaaggaagtacctcaggttttccggcgaagttcctgcaatttttgggtactcgcggagccgccgtcctccttggtcatcctatgcttctgggttcgtctctgacctcctagagcatggattggcatctggtggagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.4

Weight (kDa)

10.19

Isoelectric Point (pI)

61.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 25, 111, 274
AciI CCGC 6 cut(s) 23, 25, 111, 117, 274, 280
AfaI GTAC 3 cut(s) 106, 230, 269
AluBI AGCT 2 cut(s) 33, 356
AluI AGCT 2 cut(s) 33, 356
Alw26I GTCTC 1 cut(s) 322
AoxI GGCC 1 cut(s) 3
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 1 cut(s) 169
AxyI CCTNAGG 2 cut(s) 70, 233
BceAI ACGGC 2 cut(s) 104, 267
BcgI CGANNNNNNTGC 4 cut(s) 73, 107, 236, 270
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 329
BisI GCNGC 3 cut(s) 26, 117, 280
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 3 cut(s) 27, 118, 281
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 3 cut(s) 6, 115, 278
BmsI GCATC 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 64
BsaBI GATNNNNATC 1 cut(s) 343
BsaJI CCNNGG 3 cut(s) 23, 127, 290
BsaXI ACNNNNNCTCC 8 cut(s) 105, 135, 141, 171, 173, 203, 268, 298
Bse21I CCTNAGG 2 cut(s) 70, 233
Bse8I GATNNNNATC 1 cut(s) 343
BseDI CCNNGG 3 cut(s) 23, 127, 290
BseGI GGATG 2 cut(s) 133, 296
BseJI GATNNNNATC 1 cut(s) 343
BseMII CTCAG 3 cut(s) 78, 84, 247
Bsh1236I CGCG 3 cut(s) 25, 111, 274
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 2 cut(s) 80, 243
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 5
Bsp1720I GCTNAGC 1 cut(s) 64
BspACI CCGC 6 cut(s) 23, 25, 111, 117, 274, 280
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 3 cut(s) 77, 83, 246
BspFNI CGCG 3 cut(s) 25, 111, 274
BspLI GGNNCC 3 cut(s) 6, 115, 278
BssECI CCNNGG 3 cut(s) 23, 127, 290
BssT1I CCWWGG 2 cut(s) 127, 290
BstDEI CTNAG 3 cut(s) 64, 70, 233
BstDSI CCRYGG 1 cut(s) 23
BstF5I GGATG 2 cut(s) 133, 296
BstFNI CGCG 3 cut(s) 25, 111, 274
BstMAI GTCTC 1 cut(s) 322
BstUI CGCG 3 cut(s) 25, 111, 274
Bsu36I CCTNAGG 2 cut(s) 70, 233
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 23
BtsCI GGATG 2 cut(s) 133, 296
Cfr13I GGNCC 1 cut(s) 4
Cfr42I CCGCGG 1 cut(s) 26
Csp6I GTAC 3 cut(s) 105, 229, 268
CviAII CATG 1 cut(s) 335
CviJI RGCY 6 cut(s) 5, 33, 68, 116, 279, 356
CviKI_1 RGCY 6 cut(s) 5, 33, 68, 116, 279, 356
CviQI GTAC 3 cut(s) 105, 229, 268
DdeI CTNAG 3 cut(s) 64, 70, 233
Eco130I CCWWGG 2 cut(s) 127, 290
Eco81I CCTNAGG 2 cut(s) 70, 233
EcoT14I CCWWGG 2 cut(s) 127, 290
ErhI CCWWGG 2 cut(s) 127, 290
Esp3I CGTCTC 1 cut(s) 322
FaeI CATG 1 cut(s) 338
FaiI YATR 4 cut(s) 36, 140, 303, 336
FatI CATG 1 cut(s) 334
FauI CCCGC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 26, 117, 280
FokI GGATG 2 cut(s) 120, 283
Fsp4HI GCNGC 3 cut(s) 26, 117, 280
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 26, 117, 280
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 80, 243
Hin1II CATG 1 cut(s) 338
HpaII CCGG 2 cut(s) 80, 243
HphI GGTGA 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 322
Hpy188III TCNNGA 1 cut(s) 192
HpyAV CCTTC 2 cut(s) 172, 189
HpyCH4V TGCA 2 cut(s) 94, 257
HpyF3I CTNAG 3 cut(s) 64, 70, 233
Hsp92II CATG 1 cut(s) 338
KspI CCGCGG 1 cut(s) 26
LmnI GCTCC 3 cut(s) 113, 276, 353
LweI GCATC 1 cut(s) 353
MaeI CTAG 1 cut(s) 329
MboII GAAGA 4 cut(s) 181, 196, 211, 221
MluCI AATT 3 cut(s) 58, 95, 258
MnlI CCTC 7 cut(s) 19, 31, 79, 134, 242, 297, 335
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 80, 243
MvnI CGCG 3 cut(s) 25, 111, 274
NlaIII CATG 1 cut(s) 338
NlaIV GGNNCC 3 cut(s) 6, 115, 278
PkrI GCNGC 3 cut(s) 27, 118, 281
PspN4I GGNNCC 3 cut(s) 6, 115, 278
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 3 cut(s) 106, 230, 269
RsaNI GTAC 3 cut(s) 105, 229, 268
SacII CCGCGG 1 cut(s) 26
SatI GCNGC 3 cut(s) 26, 117, 280
Sau96I GGNCC 1 cut(s) 4
SetI ASST 6 cut(s) 35, 76, 234, 239, 327, 358
SfaNI GCATC 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 26
SgrBI CCGCGG 1 cut(s) 26
Sse9I AATT 3 cut(s) 58, 95, 258
SsiI CCGC 6 cut(s) 23, 25, 111, 117, 274, 280
SspMI CTAG 1 cut(s) 329
StyI CCWWGG 2 cut(s) 127, 290
TaqI TCGA 1 cut(s) 191
TasI AATT 3 cut(s) 58, 95, 258
TauI GCSGC 3 cut(s) 28, 119, 282
TspDTI ATGAA 1 cut(s) 182
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.