Rroxscaffold_1G00022040

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
27143725 .. 27144514
790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00022040.1

Sequence Viewer

Length: 222 bp
ATGTTCGACGCGTCTTGTCGTCTTGGTTCTGTCTATGGTCACGGATCATCCATGCATGGAGCGAGGAGAGAGAGAGAGAGAGTTGAAGCCCAAAAGCTTCGAGTTTTCCGGCGAAGTTTCTGCAATTTCCGGCAATCATCGGGGATGAATGAGCGGAGCCGATGTCCCCTTGGTAGTTCTATGCTTCTGGGCTCATATCCGACATCTTGGAGCATCGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

73

Amino Acids

8.31

Weight (kDa)

10.71

Isoelectric Point (pI)

67.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 52
AflIII ACRYGT 1 cut(s) 9
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
AlwI GGATC 1 cut(s) 52
BanII GRGCYC 1 cut(s) 194
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BmiI GGNNCC 1 cut(s) 158
BsaJI CCNNGG 1 cut(s) 169
BsaXI ACNNNNNCTCC 2 cut(s) 148, 178
BseDI CCNNGG 1 cut(s) 169
BseGI GGATG 2 cut(s) 47, 150
BseRI GAGGAG 1 cut(s) 79
Bsh1236I CGCG 1 cut(s) 11
BsiSI CCGG 2 cut(s) 109, 130
BslFI GGGAC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 52
BsrBI CCGCTC 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 169
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 169
BstF5I GGATG 2 cut(s) 47, 150
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstUI CGCG 1 cut(s) 11
BtsCI GGATG 2 cut(s) 47, 150
CseI GACGC 1 cut(s) 17
CviAII CATG 2 cut(s) 52, 56
CviJI RGCY 4 cut(s) 89, 97, 159, 192
CviKI_1 RGCY 4 cut(s) 89, 97, 159, 192
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco130I CCWWGG 1 cut(s) 169
Eco24I GRGCYC 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 169
EcoT22I ATGCAT 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 169
FaeI CATG 2 cut(s) 55, 59
FaiI YATR 5 cut(s) 36, 53, 57, 182, 196
FaqI GGGAC 1 cut(s) 150
FatI CATG 2 cut(s) 51, 55
FokI GGATG 2 cut(s) 34, 157
FriOI GRGCYC 1 cut(s) 194
HapII CCGG 2 cut(s) 109, 130
HgaI GACGC 1 cut(s) 17
Hin1II CATG 2 cut(s) 55, 59
HindIII AAGCTT 1 cut(s) 95
HpaII CCGG 2 cut(s) 109, 130
Hpy188I TCNGA 1 cut(s) 201
Hpy99I CGWCG 1 cut(s) 11
HpyCH4V TGCA 2 cut(s) 55, 123
Hsp92II CATG 2 cut(s) 55, 59
Kzo9I GATC 1 cut(s) 44
LmnI GCTCC 3 cut(s) 59, 156, 210
LpnPI CCDG 3 cut(s) 122, 143, 173
MaeIII GTNAC 1 cut(s) 38
MalI GATC 1 cut(s) 46
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 1 cut(s) 124
MluI ACGCGT 1 cut(s) 9
MnlI CCTC 1 cut(s) 57
Mph1103I ATGCAT 1 cut(s) 57
MspI CCGG 2 cut(s) 109, 130
MvnI CGCG 1 cut(s) 11
NdeII GATC 1 cut(s) 44
NlaIII CATG 2 cut(s) 55, 59
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 1 cut(s) 38
NsiI ATGCAT 1 cut(s) 57
PspN4I GGNNCC 1 cut(s) 158
Sau3AI GATC 1 cut(s) 44
SduI GDGCHC 1 cut(s) 194
SetI ASST 1 cut(s) 99
Sse9I AATT 1 cut(s) 124
SsiI CCGC 1 cut(s) 154
StyI CCWWGG 1 cut(s) 169
TaqI TCGA 2 cut(s) 6, 100
TasI AATT 1 cut(s) 124
TseFI GTSAC 1 cut(s) 38
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 57
Zsp2I ATGCAT 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.