RchiOBHm_Chr3g0491221

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016420
Physical Location & Seq
Forward (+)
38002583 .. 38002827
245 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45423

Sequence Viewer

Length: 189 bp
ATGAGGTCTACGTACTGGTACTGGCGGAGCCGCTGTTCTCCTTGGTCGTCCTATGGTTCTGAGTTCGTCTCCGACCTCCTGGAGCATGGATTGGCACCTGGTGGAGCTCGATTCCTTGAGTGGGTTGAATTGGTGAGTTGTAGTATACGCTGCCACCAGGGTATGTTTGAATTTCCTTTTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

7.29

Weight (kDa)

6.02

Isoelectric Point (pI)

47.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccI GTMKAC 2 cut(s) 8, 145
AciI CCGC 2 cut(s) 25, 31
AcsI RAATTY 1 cut(s) 170
AdeI CACNNNGTG 1 cut(s) 101
AfaI GTAC 2 cut(s) 14, 20
AfiI CCNNNNNNNGG 1 cut(s) 121
AgsI TTSAA 2 cut(s) 128, 170
AjnI CCWGG 3 cut(s) 78, 97, 156
AjuI GAANNNNNNNTTGG 1 cut(s) 162
AloI GAACNNNNNNTCC 2 cut(s) 19, 51
AluBI AGCT 1 cut(s) 107
AluI AGCT 1 cut(s) 107
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 73
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 145
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 109
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 1 cut(s) 137
BciT130I CCWGG 3 cut(s) 80, 99, 158
BcoDI GTCTC 1 cut(s) 73
BisI GCNGC 2 cut(s) 31, 151
BlsI GCNGC 2 cut(s) 32, 152
Bme1390I CCNGG 3 cut(s) 80, 99, 158
BmiI GGNNCC 2 cut(s) 29, 96
BmrFI CCNGG 3 cut(s) 80, 99, 158
BplI GAGNNNNNCTC 2 cut(s) 53, 85
BpmI CTGGAG 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 137
BsaAI YACGTR 1 cut(s) 12
BsaJI CCNNGG 2 cut(s) 41, 157
BsaXI ACNNNNNCTCC 2 cut(s) 19, 49
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse1I ACTGG 2 cut(s) 20, 26
BseBI CCWGG 3 cut(s) 80, 99, 158
BseDI CCNNGG 2 cut(s) 41, 157
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 2 cut(s) 20, 26
BseXI GCAGC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 94
BsiHKAI GWGCWC 1 cut(s) 109
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 73
BsmBI CGTCTC 1 cut(s) 73
Bsp1286I GDGCHC 1 cut(s) 109
BspACI CCGC 2 cut(s) 25, 31
BspCNI CTCAG 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 29, 96
BspT107I GGYRCC 1 cut(s) 94
BsrI ACTGG 2 cut(s) 20, 26
BssECI CCNNGG 2 cut(s) 41, 157
BssNAI GTATAC 1 cut(s) 146
BssT1I CCWWGG 1 cut(s) 41
Bst1107I GTATAC 1 cut(s) 146
Bst2UI CCWGG 3 cut(s) 80, 99, 158
BstBAI YACGTR 1 cut(s) 12
BstDEI CTNAG 1 cut(s) 60
BstMAI GTCTC 1 cut(s) 73
BstNI CCWGG 3 cut(s) 80, 99, 158
BstSCI CCNGG 3 cut(s) 78, 97, 156
BstSNI TACGTA 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 137
BstZ17I GTATAC 1 cut(s) 146
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 13, 19
CviAII CATG 1 cut(s) 86
CviJI RGCY 2 cut(s) 30, 107
CviKI_1 RGCY 2 cut(s) 30, 107
CviQI GTAC 2 cut(s) 13, 19
DdeI CTNAG 1 cut(s) 60
DraIII CACNNNGTG 1 cut(s) 101
EciI GGCGGA 1 cut(s) 40
Ecl136II GAGCTC 1 cut(s) 107
Eco105I TACGTA 1 cut(s) 12
Eco130I CCWWGG 1 cut(s) 41
Eco24I GRGCYC 1 cut(s) 109
Eco53kI GAGCTC 1 cut(s) 107
EcoICRI GAGCTC 1 cut(s) 107
EcoRII CCWGG 3 cut(s) 78, 97, 156
EcoT14I CCWWGG 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 41
Esp3I CGTCTC 1 cut(s) 73
FaeI CATG 1 cut(s) 89
FaiI YATR 4 cut(s) 54, 87, 146, 164
FatI CATG 1 cut(s) 85
FblI GTMKAC 2 cut(s) 8, 145
Fnu4HI GCNGC 2 cut(s) 31, 151
FriOI GRGCYC 1 cut(s) 109
Fsp4HI GCNGC 2 cut(s) 31, 151
GluI GCNGC 2 cut(s) 31, 151
GsuI CTGGAG 1 cut(s) 101
Hin1II CATG 1 cut(s) 89
HinfI GANTC 1 cut(s) 111
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 9, 146
Hpy188I TCNGA 2 cut(s) 61, 73
Hpy8I GTNNAC 2 cut(s) 9, 146
HpyCH4IV ACGT 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 1 cut(s) 89
LmnI GCTCC 3 cut(s) 27, 82, 104
LpnPI CCDG 7 cut(s) 7, 65, 84, 92, 111, 143, 170
Lsp1109I GCAGC 1 cut(s) 137
MabI ACCWGGT 1 cut(s) 97
MaeII ACGT 1 cut(s) 11
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 128, 170
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 3 cut(s) 80, 99, 158
MvaI CCWGG 3 cut(s) 80, 99, 158
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 2 cut(s) 29, 96
PfeI GAWTC 1 cut(s) 111
PfoI TCCNGGA 1 cut(s) 78
PkrI GCNGC 2 cut(s) 32, 152
Ppu21I YACGTR 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 109
Psp6I CCWGG 3 cut(s) 78, 97, 156
PspGI CCWGG 3 cut(s) 78, 97, 156
PspN4I GGNNCC 2 cut(s) 29, 96
RsaI GTAC 2 cut(s) 14, 20
RsaNI GTAC 2 cut(s) 13, 19
SacI GAGCTC 1 cut(s) 109
SatI GCNGC 2 cut(s) 31, 151
ScrFI CCNGG 3 cut(s) 80, 99, 158
SduI GDGCHC 1 cut(s) 109
SetI ASST 5 cut(s) 8, 14, 78, 100, 109
SexAI ACCWGGT 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SnaBI TACGTA 1 cut(s) 12
Sse9I AATT 2 cut(s) 128, 170
SsiI CCGC 2 cut(s) 25, 31
SstI GAGCTC 1 cut(s) 109
StyD4I CCNGG 3 cut(s) 78, 97, 156
StyI CCWWGG 1 cut(s) 41
TaiI ACGT 1 cut(s) 14
TaqI TCGA 1 cut(s) 109
TasI AATT 2 cut(s) 128, 170
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 111
TseI GCWGC 1 cut(s) 150
XapI RAATTY 1 cut(s) 170
XmiI GTMKAC 2 cut(s) 8, 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.