Rroxscaffold_4G00306410

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
27272385 .. 27273241
857 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306410.1

Sequence Viewer

Length: 165 bp
ATGGGTGTCGGGTACCGGCGGAGCCGCTGTCCTCTTTGGTCGTTCTATGCTTCTGGGCTCATATCCGATATCTTGGAGCATCGTCTGAGGTCCGGGGAAGCTCAACTCATTGGGTTGGTTGCATTGAGAAGTTTGGAGTGGGTGGAATGTGGAGGTGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

54

Amino Acids

6.05

Weight (kDa)

6.53

Isoelectric Point (pI)

74.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AciI CCGC 2 cut(s) 19, 25
AfaI GTAC 1 cut(s) 14
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
Asp718I GGTACC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 94
AvaII GGWCC 1 cut(s) 90
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 1 cut(s) 60
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 94
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
Bme1390I CCNGG 1 cut(s) 94
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 14, 23
BmrFI CCNGG 1 cut(s) 94
BmsI GCATC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 94
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bse118I RCCGGY 1 cut(s) 15
BseDI CCNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 77
BshNI GGYRCC 1 cut(s) 12
BsiSI CCGG 2 cut(s) 16, 93
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 157
BspACI CCGC 2 cut(s) 19, 25
BspCNI CTCAG 1 cut(s) 78
BspLI GGNNCC 2 cut(s) 14, 23
BspT107I GGYRCC 1 cut(s) 12
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 1 cut(s) 157
BstDEI CTNAG 1 cut(s) 86
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 92
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 13
CviJI RGCY 3 cut(s) 24, 58, 101
CviKI_1 RGCY 3 cut(s) 24, 58, 101
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 1 cut(s) 86
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EciI GGCGGA 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 60
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 90
EcoRV GATATC 1 cut(s) 70
EcoT38I GRGCYC 1 cut(s) 60
FaiI YATR 2 cut(s) 48, 62
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 25
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HapII CCGG 2 cut(s) 16, 93
HpaII CCGG 2 cut(s) 16, 93
Hpy188I TCNGA 2 cut(s) 67, 87
HpyCH4V TGCA 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 86
KpnI GGTACC 1 cut(s) 16
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 1 cut(s) 157
LmnI GCTCC 2 cut(s) 21, 76
LpnPI CCDG 3 cut(s) 29, 39, 106
LweI GCATC 1 cut(s) 88
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MhlI GDGCHC 1 cut(s) 60
MnlI CCTC 3 cut(s) 42, 81, 146
MspA1I CMGCKG 1 cut(s) 27
MspI CCGG 2 cut(s) 16, 93
MspR9I CCNGG 1 cut(s) 94
NciI CCSGG 1 cut(s) 94
NdeII GATC 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 14, 23
PkrI GCNGC 1 cut(s) 26
PspN4I GGNNCC 2 cut(s) 14, 23
PspPI GGNCC 1 cut(s) 90
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 1 cut(s) 90
ScrFI CCNGG 1 cut(s) 94
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 92, 103, 157
SfaNI GCATC 1 cut(s) 88
SgeI CNNG 6 cut(s) 22, 28, 66, 85, 105, 106
SinI GGWCC 1 cut(s) 90
SsiI CCGC 2 cut(s) 19, 25
StyD4I CCNGG 1 cut(s) 92
TauI GCSGC 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.