RchiOBHm_Chr4g0394681

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016420
Physical Location & Seq
Reverse (-)
10353305 .. 10354092
788 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36715

Sequence Viewer

Length: 246 bp
ATGATGACCGACCGGAAATCCTTCGTCCGGCGACGACTTGACGGCGGACCATCCGCGTTCGAATCCTCTTTTCAGCGCCAACACGGCTGTGGTCACGGATCGTCCATGCAGGGAGTGAGGAGAGAGAATCGAAGCCCGAAAGCTTCGAGTTTCCGGCGAAGTTTCTGCAATTTCCGGCGATCATCGGGGATGTATGAGGTATGGAAATCGATCCTCTCGGTGAGTTCTACGTACTGGTATACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.43

Weight (kDa)

11.13

Isoelectric Point (pI)

82.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 239
AccII CGCG 1 cut(s) 56
AciI CCGC 2 cut(s) 45, 54
AclWI GGATC 2 cut(s) 106, 205
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 27
AleI CACNNNNGTG 1 cut(s) 87
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 2 cut(s) 106, 205
Asp700I GAANNNNTTC 1 cut(s) 20
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 47
AsuHPI GGTGA 1 cut(s) 232
AsuII TTCGAA 1 cut(s) 60
AvaII GGWCC 1 cut(s) 47
BccI CCATC 1 cut(s) 58
BceAI ACGGC 2 cut(s) 58, 100
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BfoI RGCGCY 1 cut(s) 79
BglI GCCNNNNNGGC 1 cut(s) 84
Bme18I GGWCC 1 cut(s) 47
BmgT120I GGNCC 1 cut(s) 47
Bpu14I TTCGAA 1 cut(s) 60
Bsa29I ATCGAT 1 cut(s) 209
BsaAI YACGTR 1 cut(s) 231
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 209
BseGI GGATG 2 cut(s) 50, 195
BseLI CCNNNNNNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 239
BseRI GAGGAG 1 cut(s) 133
Bsh1236I CGCG 1 cut(s) 56
Bsh1285I CGRYCG 1 cut(s) 13
BshVI ATCGAT 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 13
BsiSI CCGG 4 cut(s) 13, 28, 154, 175
BslI CCNNNNNNNGG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 60
Bsp143I GATC 3 cut(s) 98, 179, 210
BspACI CCGC 2 cut(s) 45, 54
BspDI ATCGAT 1 cut(s) 209
BspFNI CGCG 1 cut(s) 56
BspPI GGATC 2 cut(s) 106, 205
BspT104I TTCGAA 1 cut(s) 60
BsrI ACTGG 1 cut(s) 239
BssMI GATC 3 cut(s) 98, 179, 210
BssNAI GTATAC 1 cut(s) 240
Bst1107I GTATAC 1 cut(s) 240
BstBAI YACGTR 1 cut(s) 231
BstBI TTCGAA 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 2 cut(s) 50, 195
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 3 cut(s) 101, 182, 213
BstMBI GATC 3 cut(s) 98, 179, 210
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSNI TACGTA 1 cut(s) 231
BstUI CGCG 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 240
Bsu15I ATCGAT 1 cut(s) 209
BsuTUI ATCGAT 1 cut(s) 209
BtsCI GGATG 2 cut(s) 50, 195
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 47
ClaI ATCGAT 1 cut(s) 209
Csp6I GTAC 1 cut(s) 232
CviAII CATG 1 cut(s) 106
CviJI RGCY 3 cut(s) 87, 135, 143
CviKI_1 RGCY 3 cut(s) 87, 135, 143
CviQI GTAC 1 cut(s) 232
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 100, 181, 212
DpnII GATC 3 cut(s) 98, 179, 210
EciI GGCGGA 1 cut(s) 60
Eco105I TACGTA 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 47
FaeI CATG 1 cut(s) 109
FaiI YATR 4 cut(s) 107, 195, 202, 240
FatI CATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 239
FokI GGATG 2 cut(s) 37, 202
GlaI GCGC 1 cut(s) 77
HaeII RGCGCY 1 cut(s) 79
HapII CCGG 4 cut(s) 13, 28, 154, 175
HhaI GCGC 1 cut(s) 78
Hin1II CATG 1 cut(s) 109
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 141
HinfI GANTC 2 cut(s) 62, 127
HpaII CCGG 4 cut(s) 13, 28, 154, 175
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 240
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 1 cut(s) 36
HpyAV CCTTC 1 cut(s) 31
HpyCH4IV ACGT 1 cut(s) 230
HpyCH4V TGCA 2 cut(s) 109, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 1 cut(s) 230
Hsp92II CATG 1 cut(s) 109
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 3 cut(s) 98, 179, 210
LpnPI CCDG 6 cut(s) 26, 41, 95, 167, 188, 220
MaeII ACGT 1 cut(s) 230
MaeIII GTNAC 1 cut(s) 92
MalI GATC 3 cut(s) 100, 181, 212
MboI GATC 3 cut(s) 98, 179, 210
MluCI AATT 1 cut(s) 169
MnlI CCTC 4 cut(s) 76, 111, 190, 224
MroXI GAANNNNTTC 1 cut(s) 20
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 4 cut(s) 13, 28, 154, 175
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 84
NdeII GATC 3 cut(s) 98, 179, 210
NlaIII CATG 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 92
NspV TTCGAA 1 cut(s) 60
OliI CACNNNNGTG 1 cut(s) 87
PdmI GAANNNNTTC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 62, 127
Ppu21I YACGTR 1 cut(s) 231
PspPI GGNCC 1 cut(s) 47
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 87
Sau3AI GATC 3 cut(s) 98, 179, 210
Sau96I GGNCC 1 cut(s) 47
SetI ASST 3 cut(s) 145, 201, 233
SfuI TTCGAA 1 cut(s) 60
SinI GGWCC 1 cut(s) 47
SmiMI CAYNNNNRTG 1 cut(s) 87
SnaBI TACGTA 1 cut(s) 231
Sse9I AATT 1 cut(s) 169
SsiI CCGC 2 cut(s) 45, 54
TaiI ACGT 1 cut(s) 233
TaqI TCGA 4 cut(s) 60, 130, 146, 209
TaqII GACCGA 1 cut(s) 23
TasI AATT 1 cut(s) 169
TfiI GAWTC 2 cut(s) 62, 127
TseFI GTSAC 1 cut(s) 92
Tsp45I GTSAC 1 cut(s) 92
TspGWI ACGGA 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 86
XmiI GTMKAC 1 cut(s) 239
XmnI GAANNNNTTC 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.