Rh7AG454200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016420
Physical Location & Seq
Forward (+)
62344162 .. 62345181
1020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG454200.1

Sequence Viewer

Length: 363 bp
ATGGCGCCCTCGCAAATCCACCCGCGACAAAGCTATGAGGAAGCAACTAGCCAACAAAATTGCTCAGCTTCAGGTTTTCAGGCGAAGTTCCTGCAATTTTCAGGTACCCGCGGAGCCGCTGTCCTCCTTGGATCTCCTATGCTTCTGGGTTCGTCTCCGACCTTCTGGAGCATGGATTGGCACCTGGTGGAGCTTGATTCCTTGAGTGGGTTGAATTGGCTATCAGTCATTCCTTCTCTCAATCATTCAAGCTTCACACTATTGTTGCTCTGCATTTGGATAATCTACTTCTCTGAGAAACAAATTGTAATCGCATTCCTAATCCGGTGTTCCGAGGGAAGGATATACGATTTGAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.42

Weight (kDa)

6.25

Isoelectric Point (pI)

47.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 3 cut(s) 4, 104, 180
AccII CGCG 2 cut(s) 25, 111
AciI CCGC 4 cut(s) 23, 109, 111, 117
AclWI GGATC 1 cut(s) 139
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 5
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 1 cut(s) 106
AfiI CCNNNNNNNGG 2 cut(s) 207, 339
AgsI TTSAA 3 cut(s) 214, 249, 355
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 5 cut(s) 33, 68, 193, 252, 360
AluI AGCT 5 cut(s) 33, 68, 193, 252, 360
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 1 cut(s) 139
Asp718I GGTACC 1 cut(s) 104
AspLEI GCGC 1 cut(s) 7
BanI GGYRCC 3 cut(s) 4, 104, 180
BcgI CGANNNNNNTGC 2 cut(s) 73, 107
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 1 cut(s) 48
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 1 cut(s) 117
BlpI GCTNAGC 1 cut(s) 64
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 185
BmiI GGNNCC 4 cut(s) 6, 106, 115, 182
BmrFI CCNGG 1 cut(s) 185
BpmI CTGGAG 1 cut(s) 187
Bpu1102I GCTNAGC 1 cut(s) 64
BpuEI CTTGAG 1 cut(s) 223
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 3 cut(s) 109, 127, 333
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 207, 339
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 3 cut(s) 109, 127, 333
BseLI CCNNNNNNNGG 2 cut(s) 207, 339
BseMII CTCAG 2 cut(s) 78, 285
Bsh1236I CGCG 2 cut(s) 25, 111
BshNI GGYRCC 3 cut(s) 4, 104, 180
BsiSI CCGG 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 207, 339
BsmAI GTCTC 1 cut(s) 159
BsmBI CGTCTC 1 cut(s) 159
BsmI GAATGC 1 cut(s) 314
Bsp143I GATC 1 cut(s) 131
Bsp1720I GCTNAGC 1 cut(s) 64
BspACI CCGC 4 cut(s) 23, 109, 111, 117
BspCNI CTCAG 2 cut(s) 77, 286
BspFNI CGCG 2 cut(s) 25, 111
BspLI GGNNCC 4 cut(s) 6, 106, 115, 182
BspPI GGATC 1 cut(s) 139
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 3 cut(s) 4, 104, 180
BssECI CCNNGG 3 cut(s) 109, 127, 333
BssMI GATC 1 cut(s) 131
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 127
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 2 cut(s) 64, 294
BstDSI CCRYGG 1 cut(s) 109
BstFNI CGCG 2 cut(s) 25, 111
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstUI CGCG 2 cut(s) 25, 111
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 109
CfoI GCGC 1 cut(s) 7
Cfr42I CCGCGG 1 cut(s) 112
CsiI ACCWGGT 1 cut(s) 183
Csp6I GTAC 1 cut(s) 105
CviAII CATG 1 cut(s) 172
CviJI RGCY 8 cut(s) 33, 51, 68, 116, 193, 220, 252, 360
CviKI_1 RGCY 8 cut(s) 33, 51, 68, 116, 193, 220, 252, 360
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 2 cut(s) 64, 294
DinI GGCGCC 1 cut(s) 6
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
DraIII CACNNNGTG 1 cut(s) 187
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 127
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 127
Esp3I CGTCTC 1 cut(s) 159
FaeI CATG 1 cut(s) 175
FaiI YATR 4 cut(s) 36, 140, 173, 346
FatI CATG 1 cut(s) 171
FauI CCCGC 2 cut(s) 30, 116
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 187
HaeII RGCGCY 1 cut(s) 8
HapII CCGG 1 cut(s) 325
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 175
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HindIII AAGCTT 1 cut(s) 250
HinfI GANTC 1 cut(s) 197
HpaII CCGG 1 cut(s) 325
Hpy188I TCNGA 3 cut(s) 159, 295, 334
Hpy188III TCNNGA 1 cut(s) 166
HpyAV CCTTC 3 cut(s) 172, 243, 333
HpyCH4V TGCA 2 cut(s) 94, 273
HpyF3I CTNAG 2 cut(s) 64, 294
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 175
HspAI GCGC 1 cut(s) 5
KasI GGCGCC 1 cut(s) 4
KpnI GGTACC 1 cut(s) 108
KspI CCGCGG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 131
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 3 cut(s) 113, 168, 190
LpnPI CCDG 9 cut(s) 57, 65, 87, 104, 131, 151, 170, 197, 338
MabI ACCWGGT 1 cut(s) 183
MaeI CTAG 1 cut(s) 48
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MflI RGATCY 1 cut(s) 131
MluCI AATT 4 cut(s) 58, 95, 214, 303
Mly113I GGCGCC 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 4 cut(s) 19, 31, 134, 328
MspA1I CMGCKG 2 cut(s) 111, 119
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 185
MvnI CGCG 2 cut(s) 25, 111
NarI GGCGCC 1 cut(s) 5
NdeII GATC 1 cut(s) 131
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 4 cut(s) 6, 106, 115, 182
PciSI GCTCTTC 1 cut(s) 350
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 118
PluTI GGCGCC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 4 cut(s) 6, 106, 115, 182
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
SacII CCGCGG 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 350
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 185
SetI ASST 9 cut(s) 35, 70, 76, 106, 164, 186, 195, 254, 362
SexAI ACCWGGT 1 cut(s) 183
SfoI GGCGCC 1 cut(s) 6
Sfr303I CCGCGG 1 cut(s) 112
SgrBI CCGCGG 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 4 cut(s) 58, 95, 214, 303
SsiI CCGC 4 cut(s) 23, 109, 111, 117
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 127
TasI AATT 4 cut(s) 58, 95, 214, 303
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 197
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.