pycom03g02860

Plant protein of unknown function (DUF868)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0017083
Physical Location & Seq
Reverse (-)
2235519 .. 2236434
916 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGTCTCATCAAATTCTTCAGGCCTCACCTGTTTCCATTCCAAAATCACCATCTTCTGAGAAAGTGTGCAAGGAAAAGGAGACAGATAAGTCAGCTCCGCAGAGCGCTGTGACTTATGTCTATCAAGCGAAAATAGCTGAATTGTGCTGCAATGTCACAGTGACATGGTGTAAAAACGTAACTAGCCATTCCCTCTGCATCACAGTGGAAAAGCCTTGTCAACAAAATCAGTGCTGTACTTGTAAGATTGACTTAAACTCTACTCAGTTTTGGGGCAAGAAAGGTCTCAAATCGTTTGAAGTAGATGGAAGACGGGTAGATGTGTATTGGGATTTTCGACAGGCAAAATTCTCCTGCATCCCAGAGCCATGCTCGAATTACTATGTTGCCTTGGTGTCCAAACAAGAGGTGGTTTTACTGCTGGGGGACTTAATGGAAGATGCTTATAAGCGGACCAGATCAAGATCATCATCGGAAGAGGCTAGGTTGATGTACAAGAAGGAAAATGTGTGCGGGAAAGGATTGTTTTGCACAAAAGCCATGTTGGAGGAAGGGAGGAAAGAACATGACATTGTGATTGAAACATTGTTGTCCGGGCCCAAAGATCCTGAAATGTGGATTAGCGTAGACGGGACAGTGGCAATTCGGATTATGAACTTGAATTGGAGGTTTAGAGGGAATAAAACTGTGATGCTGAATGATATGCCAGTTGAAATTTTTTGGGATGTGCATGATTGGTTGTTTAGTAGCTTAGGCACAAGCCAAGGGTTTTTCATTTTTAAGGCAGGGAGGGTAGATTGGGAATCATCGAATATCAATTACGATTATGCGAGTAGAAATGGAAACTGCAGCAGTTGCACTCATCAAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF868

Protein Analysis

291

Amino Acids

33.02

Weight (kDa)

7.84

Isoelectric Point (pI)

44.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF868 PF05910 33 - 273 2.5e-93 Plant protein of unknown function (DUF868)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017083)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13229
fragaria_vesca FvH4_3g42170
malus_domestica MD03G1037200.v1.1 MD11G1038300.v1.1
pyrus_communis pycom03g02860
rosa_chinensis RchiOBHm_Chr5g0075431 RchiOBHm_Chr5g0075441
rosa_laevigata RLG00000036561
rosa_multiflora Rmu_sc0000770.1_g000016
rosa_rugosa Rorug05G0439500
rosa_samantha Rh5BG517800 Rh5CG541400
rosa_wichuraiana Rw5G046040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 447
AasI GACNNNNNNGTC 1 cut(s) 88
AccI GTMKAC 1 cut(s) 627
AciI CCGC 3 cut(s) 98, 451, 513
AclWI GGATC 1 cut(s) 599
AcsI RAATTY 3 cut(s) 12, 347, 714
AfaI GTAC 2 cut(s) 238, 494
AfeI AGCGCT 1 cut(s) 106
AgsI TTSAA 4 cut(s) 299, 581, 661, 713
AluBI AGCT 3 cut(s) 95, 137, 750
AluI AGCT 3 cut(s) 95, 137, 750
Alw26I GTCTC 3 cut(s) 9, 74, 290
AlwI GGATC 1 cut(s) 599
Aor51HI AGCGCT 1 cut(s) 106
AoxI GGCC 2 cut(s) 21, 596
ApaI GGGCCC 1 cut(s) 600
ApeKI GCWGC 2 cut(s) 147, 849
ApoI RAATTY 3 cut(s) 12, 347, 714
AspLEI GCGC 1 cut(s) 107
AspS9I GGNCC 3 cut(s) 453, 596, 597
AsuC2I CCSGG 1 cut(s) 595
AsuHPI GGTGA 2 cut(s) 18, 39
AvaII GGWCC 1 cut(s) 453
BaeGI GKGCMC 1 cut(s) 600
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 134, 861
BccI CCATC 2 cut(s) 58, 299
BcnI CCSGG 1 cut(s) 595
BcoDI GTCTC 3 cut(s) 9, 74, 290
BfaI CTAG 2 cut(s) 183, 483
BfmI CTRYAG 1 cut(s) 847
BfoI RGCGCY 1 cut(s) 108
BisI GCNGC 2 cut(s) 148, 850
BlsI GCNGC 2 cut(s) 149, 851
Bme1390I CCNGG 1 cut(s) 595
Bme18I GGWCC 1 cut(s) 453
BmgT120I GGNCC 3 cut(s) 453, 596, 597
BmiI GGNNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 595
BmsI GCATC 4 cut(s) 207, 366, 430, 681
BoxI GACNNNNGTC 1 cut(s) 116
BpiI GAAGAC 1 cut(s) 316
BplI GAGNNNNNCTC 2 cut(s) 356, 388
Bpu10I CCTNAGC 1 cut(s) 751
BpuMI CCSGG 1 cut(s) 595
BsaBI GATNNNNATC 2 cut(s) 463, 469
BsaI GGTCTC 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 390, 763
Bse1I ACTGG 1 cut(s) 707
Bse3DI GCAATG 1 cut(s) 157
Bse8I GATNNNNATC 2 cut(s) 463, 469
BseDI CCNNGG 2 cut(s) 390, 763
BseGI GGATG 2 cut(s) 357, 730
BseJI GATNNNNATC 2 cut(s) 463, 469
BseMI GCAATG 1 cut(s) 157
BseMII CTCAG 2 cut(s) 48, 278
BseNI ACTGG 1 cut(s) 707
BseSI GKGCMC 1 cut(s) 600
BseXI GCAGC 2 cut(s) 134, 861
BseYI CCCAGC 1 cut(s) 421
BshFI GGCC 2 cut(s) 23, 598
BsiSI CCGG 1 cut(s) 594
BslFI GGGAC 2 cut(s) 440, 646
BsmAI GTCTC 3 cut(s) 9, 74, 290
BsmFI GGGAC 2 cut(s) 440, 646
BsnI GGCC 2 cut(s) 23, 598
Bso31I GGTCTC 1 cut(s) 290
Bsp120I GGGCCC 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 600
Bsp1407I TGTACA 1 cut(s) 492
Bsp143I GATC 3 cut(s) 458, 464, 604
BspACI CCGC 3 cut(s) 98, 451, 513
BspANI GGCC 2 cut(s) 23, 598
BspCNI CTCAG 2 cut(s) 49, 277
BspLI GGNNCC 1 cut(s) 598
BspMAI CTGCAG 1 cut(s) 851
BspPI GGATC 1 cut(s) 599
BspTNI GGTCTC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 492
BsrI ACTGG 1 cut(s) 707
BssECI CCNNGG 2 cut(s) 390, 763
BssMI GATC 3 cut(s) 458, 464, 604
BssT1I CCWWGG 2 cut(s) 390, 763
Bst4CI ACNGT 4 cut(s) 160, 205, 637, 688
Bst6I CTCTTC 1 cut(s) 471
BstAPI GCANNNNNTGC 1 cut(s) 855
BstAUI TGTACA 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 57, 264, 751
BstF5I GGATG 2 cut(s) 357, 730
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 1 cut(s) 107
BstKTI GATC 3 cut(s) 461, 467, 607
BstMAI GTCTC 3 cut(s) 9, 74, 290
BstMBI GATC 3 cut(s) 458, 464, 604
BstMWI GCNNNNNNNGC 2 cut(s) 134, 855
BstPAI GACNNNNGTC 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 593
BstSFI CTRYAG 1 cut(s) 847
BstSLI GKGCMC 1 cut(s) 600
BstV1I GCAGC 2 cut(s) 134, 861
BstV2I GAAGAC 1 cut(s) 316
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 2 cut(s) 23, 598
BtsCI GGATG 2 cut(s) 357, 730
BtsIMutI CAGTG 4 cut(s) 165, 210, 236, 642
CfoI GCGC 1 cut(s) 107
Cfr13I GGNCC 3 cut(s) 453, 596, 597
Csp6I GTAC 2 cut(s) 237, 493
CviAII CATG 5 cut(s) 165, 369, 541, 566, 731
CviQI GTAC 2 cut(s) 237, 493
DdeI CTNAG 3 cut(s) 57, 264, 751
DpnI GATC 3 cut(s) 460, 466, 606
DpnII GATC 3 cut(s) 458, 464, 604
DrdI GACNNNNNNGTC 1 cut(s) 88
DseDI GACNNNNNNGTC 1 cut(s) 88
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
Eco130I CCWWGG 2 cut(s) 390, 763
Eco147I AGGCCT 1 cut(s) 23
Eco24I GRGCYC 1 cut(s) 600
Eco31I GGTCTC 1 cut(s) 290
Eco47I GGWCC 1 cut(s) 453
Eco47III AGCGCT 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 390, 763
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 2 cut(s) 390, 763
FaeI CATG 5 cut(s) 168, 372, 544, 569, 734
FalI AAGNNNNNCTT 2 cut(s) 236, 268
FaqI GGGAC 2 cut(s) 440, 646
FatI CATG 5 cut(s) 164, 368, 540, 565, 730
FauI CCCGC 1 cut(s) 506
FblI GTMKAC 1 cut(s) 627
Fnu4HI GCNGC 2 cut(s) 148, 850
FokI GGATG 2 cut(s) 344, 737
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 2 cut(s) 148, 850
FspBI CTAG 2 cut(s) 183, 483
GlaI GCGC 1 cut(s) 106
GluI GCNGC 2 cut(s) 148, 850
GsaI CCCAGC 1 cut(s) 425
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 2 cut(s) 23, 598
HapII CCGG 1 cut(s) 594
HhaI GCGC 1 cut(s) 107
Hin1II CATG 5 cut(s) 168, 372, 544, 569, 734
Hin6I GCGC 1 cut(s) 105
HinP1I GCGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 1 cut(s) 803
HpaII CCGG 1 cut(s) 594
HphI GGTGA 2 cut(s) 18, 39
Hpy166II GTNNAC 2 cut(s) 221, 628
Hpy188I TCNGA 3 cut(s) 58, 475, 648
Hpy188III TCNNGA 2 cut(s) 462, 608
Hpy8I GTNNAC 2 cut(s) 221, 628
HpyAV CCTTC 2 cut(s) 493, 545
HpyCH4III ACNGT 4 cut(s) 160, 205, 637, 688
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 8 cut(s) 69, 150, 198, 357, 531, 730, 849, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 855
HpyF3I CTNAG 3 cut(s) 57, 264, 751
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 5 cut(s) 168, 372, 544, 569, 734
HspAI GCGC 1 cut(s) 105
Kzo9I GATC 3 cut(s) 458, 464, 604
LmnI GCTCC 1 cut(s) 100
Lsp1109I GCAGC 2 cut(s) 134, 861
LweI GCATC 4 cut(s) 207, 366, 430, 681
MaeI CTAG 2 cut(s) 183, 483
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 109, 154, 160, 178
MalI GATC 3 cut(s) 460, 466, 606
MboI GATC 3 cut(s) 458, 464, 604
MboII GAAGA 5 cut(s) 8, 45, 321, 449, 488
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 8 cut(s) 12, 140, 347, 376, 642, 661, 714, 817
MmeI TCCRAC 1 cut(s) 525
MnlI CCTC 9 cut(s) 34, 203, 400, 472, 541, 549, 660, 668, 783
MseI TTAA 3 cut(s) 254, 431, 780
MslI CAYNNNNRTG 1 cut(s) 203
MspI CCGG 1 cut(s) 594
MspR9I CCNGG 1 cut(s) 595
MwoI GCNNNNNNNGC 2 cut(s) 134, 855
NciI CCSGG 1 cut(s) 595
NdeII GATC 3 cut(s) 458, 464, 604
NlaIII CATG 5 cut(s) 168, 372, 544, 569, 734
NlaIV GGNNCC 1 cut(s) 598
NmuCI GTSAC 3 cut(s) 109, 154, 160
PceI AGGCCT 1 cut(s) 23
PfeI GAWTC 1 cut(s) 803
PkrI GCNGC 2 cut(s) 149, 851
PshAI GACNNNNGTC 1 cut(s) 116
PsiI TTATAA 1 cut(s) 447
PspFI CCCAGC 1 cut(s) 421
PspN4I GGNNCC 1 cut(s) 598
PspOMI GGGCCC 1 cut(s) 596
PspPI GGNCC 3 cut(s) 453, 596, 597
PstI CTGCAG 1 cut(s) 851
PsuI RGATCY 1 cut(s) 604
RsaI GTAC 2 cut(s) 238, 494
RsaNI GTAC 2 cut(s) 237, 493
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 3 cut(s) 254, 431, 780
SatI GCNGC 2 cut(s) 148, 850
Sau3AI GATC 3 cut(s) 458, 464, 604
Sau96I GGNCC 3 cut(s) 453, 596, 597
ScrFI CCNGG 1 cut(s) 595
SduI GDGCHC 1 cut(s) 600
SetI ASST 9 cut(s) 31, 97, 139, 180, 286, 411, 488, 671, 752
SfaNI GCATC 4 cut(s) 207, 366, 430, 681
SfcI CTRYAG 1 cut(s) 847
SinI GGWCC 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 203
Sse9I AATT 8 cut(s) 12, 140, 347, 376, 642, 661, 714, 817
SseBI AGGCCT 1 cut(s) 23
SsiI CCGC 3 cut(s) 98, 451, 513
SspMI CTAG 2 cut(s) 183, 483
StuI AGGCCT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 593
StyI CCWWGG 2 cut(s) 390, 763
TaaI ACNGT 4 cut(s) 160, 205, 637, 688
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 337, 374, 809
TasI AATT 8 cut(s) 12, 140, 347, 376, 642, 661, 714, 817
TatI WGTACW 2 cut(s) 236, 492
TfiI GAWTC 1 cut(s) 803
Tru1I TTAA 3 cut(s) 254, 431, 780
Tru9I TTAA 3 cut(s) 254, 431, 780
TscAI CASTG 4 cut(s) 165, 210, 236, 642
TseFI GTSAC 3 cut(s) 109, 154, 160
TseI GCWGC 2 cut(s) 147, 849
Tsp45I GTSAC 3 cut(s) 109, 154, 160
TspDTI ATGAA 2 cut(s) 668, 763
TspRI CASTG 4 cut(s) 165, 210, 236, 642
VpaK11BI GGWCC 1 cut(s) 453
XapI RAATTY 3 cut(s) 12, 347, 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 406
XmiI GTMKAC 1 cut(s) 627
XspI CTAG 2 cut(s) 183, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.