Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005593

Physical Location & Seq

Genomic Coordinates Reverse (-)

3024432 .. 3025406

Gene Structure 975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g03820.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGATTAAGAATTGCTCTGGGATCAGCCAAGGGCATCCTATACCTCCATACAGAAGCCAACCCTCCGATATTTCATCGAGATATCAAGGCCACCAATATATTATTGGACTCTAAGTTGATTGCAAAGGTTGCTGATTTTGGCCTTTCCCGTCTTGCCCCGGTTCCAGATTTTGAAGGGACTGTGCCTGCTCATGTATCCACAGTAGTGAAGGGGACACCGGGTTACCTTGATCCGGAGTACTTCTTAACTCATAAGCTAACGGATAAGAGCGATGTTTATAGCCTCGGTGTTGTGTTTTTGGAGCTCTTAACAGGCATGCAGCCAATCTCACATGGAAAAAACATTGTTCGAGAGGTAAACATTGCATTTCAATCCGGTATGATCTTCTCAGTTATTGATGGAAGAATGGGGTCTTATCCTTCCGAGTGTGTGGAAAAGTTCTTGAGTTTGGCTCTCAAGTGTTGCAAAGAGGAGACAGACGCGAGACCCCCAATGGCGGAGGTTGTTCGAGAACTCGAGAACATATGGCTTATGATGCCGGAGTCTGACAGCAGAACATCGGAATCAGTGACGAGCAGTAGTGGTGGAAAGGTCGTGACTCCTCCACCCTCATCCAATGCAGCGAGGCATCGTTACGTCTCTATAGACGTCTCTGGCAGTGACCTTGTTAGCGGAGTCGTACCGACAATTACACCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

235

Amino Acids

25.46

Weight (kDa)

6.31

Isoelectric Point (pI)

41.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06840
fragaria_vesca	FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880
malus_domestica	MD03G1048600.v1.1 MD03G1048800.v1.1 MD11G1051300.v1.1
prunus_persica	Prupe.6G039100_v2.0.a1
pyrus_communis	pycom03g03820 pycom11g04110
rosa_chinensis	RchiOBHm_Chr5g0073661
rosa_laevigata	RLG00000036402
rosa_multiflora	Rmu_ssc0000242.1_g000018
rosa_roxburghii	Rroxscaffold_1G00007650
rosa_rugosa	Rorug05G0425700 Rorug05G0425700
rosa_samantha	Rh5AG482600 Rh5DG515800
rosa_wichuraiana	Rw5G044840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	654
AccII	CGCG	1 cut(s)	485
AccIII	TCCGGA	1 cut(s)	235
AciI	CCGC	2 cut(s)	500, 675
AclWI	GGATC	2 cut(s)	31, 227
AcyI	GRCGYC	1 cut(s)	651
AfaI	GTAC	2 cut(s)	242, 684
AfiI	CCNNNNNNNGG	2 cut(s)	235, 499
AgsI	TTSAA	2 cut(s)	176, 374
AleI	CACNNNNGTG	1 cut(s)	206
AluBI	AGCT	2 cut(s)	259, 307
AluI	AGCT	2 cut(s)	259, 307
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	4 cut(s)	470, 481, 646, 658
AlwI	GGATC	2 cut(s)	31, 227
Ama87I	CYCGRG	1 cut(s)	518
Aor13HI	TCCGGA	1 cut(s)	235
AoxI	GGCC	2 cut(s)	90, 142
ApeKI	GCWGC	2 cut(s)	322, 623
AsuC2I	CCSGG	2 cut(s)	161, 222
AvaI	CYCGRG	1 cut(s)	518
BanII	GRGCYC	1 cut(s)	309
Bbv12I	GWGCWC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	334, 635
BccI	CCATC	1 cut(s)	395
BciVI	GTATCC	1 cut(s)	208
BcnI	CCSGG	2 cut(s)	161, 222
BcoDI	GTCTC	4 cut(s)	470, 481, 646, 658
BfmI	CTRYAG	1 cut(s)	645
BfuI	GTATCC	1 cut(s)	208
BisI	GCNGC	2 cut(s)	323, 624
BlsI	GCNGC	2 cut(s)	324, 625
BmcAI	AGTACT	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	161, 222
BmeT110I	CYCGRG	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	165
BmrFI	CCNGG	2 cut(s)	161, 222
BmsI	GCATC	3 cut(s)	45, 528, 640
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpuEI	CTTGAG	2 cut(s)	443, 466
BpuMI	CCSGG	2 cut(s)	161, 222
BsaHI	GRCGYC	1 cut(s)	651
BsaI	GGTCTC	1 cut(s)	481
BsaJI	CCNNGG	3 cut(s)	30, 159, 286
BsaWI	WCCGGW	2 cut(s)	235, 377
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 499
Bse3DI	GCAATG	1 cut(s)	363
BseAI	TCCGGA	1 cut(s)	235
BseDI	CCNNGG	3 cut(s)	30, 159, 286
BseGI	GGATG	2 cut(s)	36, 614
BseLI	CCNNNNNNNGG	2 cut(s)	235, 499
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	1 cut(s)	405
BseRI	GAGGAG	2 cut(s)	488, 594
BseXI	GCAGC	2 cut(s)	334, 635
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	2 cut(s)	92, 144
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	1 cut(s)	518
BsiSI	CCGG	5 cut(s)	161, 221, 236, 378, 542
BslFI	GGGAC	2 cut(s)	193, 229
BslI	CCNNNNNNNGG	2 cut(s)	235, 499
BsmAI	GTCTC	4 cut(s)	470, 481, 646, 658
BsmBI	CGTCTC	2 cut(s)	646, 658
BsmFI	GGGAC	2 cut(s)	193, 229
BsnI	GGCC	2 cut(s)	92, 144
Bso31I	GGTCTC	1 cut(s)	481
BsoBI	CYCGRG	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	309
Bsp13I	TCCGGA	1 cut(s)	235
Bsp143I	GATC	3 cut(s)	23, 232, 384
BspACI	CCGC	2 cut(s)	500, 675
BspANI	GGCC	2 cut(s)	92, 144
BspCNI	CTCAG	1 cut(s)	404
BspEI	TCCGGA	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	165
BspPI	GGATC	2 cut(s)	31, 227
BspTNI	GGTCTC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	363
BssECI	CCNNGG	3 cut(s)	30, 159, 286
BssMI	GATC	3 cut(s)	23, 232, 384
BssNI	GRCGYC	1 cut(s)	651
BssT1I	CCWWGG	1 cut(s)	30
Bst4CI	ACNGT	2 cut(s)	184, 205
BstACI	GRCGYC	1 cut(s)	651
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	2 cut(s)	189, 320
BstDEI	CTNAG	2 cut(s)	114, 391
BstEII	GGTNACC	1 cut(s)	224
BstF5I	GGATG	2 cut(s)	36, 614
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	3 cut(s)	26, 235, 387
BstMAI	GTCTC	4 cut(s)	470, 481, 646, 658
BstMBI	GATC	3 cut(s)	23, 232, 384
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 538
BstNSI	RCATGY	1 cut(s)	322
BstPI	GGTNACC	1 cut(s)	224
BstSCI	CCNGG	2 cut(s)	159, 220
BstSFI	CTRYAG	1 cut(s)	645
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	2 cut(s)	334, 635
BsuI	GTATCC	1 cut(s)	208
BsuRI	GGCC	2 cut(s)	92, 144
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	2 cut(s)	36, 614
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	2 cut(s)	576, 667
Cac8I	GCNNGC	2 cut(s)	189, 320
CseI	GACGC	1 cut(s)	491
Csp6I	GTAC	2 cut(s)	241, 683
CviAII	CATG	3 cut(s)	194, 319, 335
CviQI	GTAC	2 cut(s)	241, 683
DdeI	CTNAG	2 cut(s)	114, 391
DpnI	GATC	3 cut(s)	25, 234, 386
DpnII	GATC	3 cut(s)	23, 232, 384
EciI	GGCGGA	1 cut(s)	515
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	1 cut(s)	30
Eco24I	GRGCYC	1 cut(s)	309
Eco31I	GGTCTC	1 cut(s)	481
Eco32I	GATATC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	518
Eco91I	GGTNACC	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	307
EcoO65I	GGTNACC	1 cut(s)	224
EcoRV	GATATC	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	30
Esp3I	CGTCTC	2 cut(s)	646, 658
FaeI	CATG	3 cut(s)	197, 322, 338
FaqI	GGGAC	2 cut(s)	193, 229
FatI	CATG	3 cut(s)	193, 318, 334
FauNDI	CATATG	1 cut(s)	527
Fnu4HI	GCNGC	2 cut(s)	323, 624
FokI	GGATG	2 cut(s)	23, 601
FriOI	GRGCYC	1 cut(s)	309
Fsp4HI	GCNGC	2 cut(s)	323, 624
GluI	GCNGC	2 cut(s)	323, 624
HaeIII	GGCC	2 cut(s)	92, 144
HapII	CCGG	5 cut(s)	161, 221, 236, 378, 542
HgaI	GACGC	1 cut(s)	491
Hin1I	GRCGYC	1 cut(s)	651
Hin1II	CATG	3 cut(s)	197, 322, 338
HinfI	GANTC	5 cut(s)	110, 545, 566, 601, 678
HpaII	CCGG	5 cut(s)	161, 221, 236, 378, 542
Hpy166II	GTNNAC	1 cut(s)	361
Hpy188I	TCNGA	4 cut(s)	69, 427, 550, 565
Hpy188III	TCNNGA	8 cut(s)	80, 167, 236, 353, 445, 512, 520, 598
Hpy8I	GTNNAC	1 cut(s)	361
HpyAV	CCTTC	3 cut(s)	170, 205, 432
HpyCH4III	ACNGT	2 cut(s)	184, 205
HpyCH4IV	ACGT	2 cut(s)	639, 651
HpyCH4V	TGCA	5 cut(s)	125, 322, 368, 468, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 538
HpyF3I	CTNAG	2 cut(s)	114, 391
HpySE526I	ACGT	2 cut(s)	639, 651
Hsp92I	GRCGYC	1 cut(s)	651
Hsp92II	CATG	3 cut(s)	197, 322, 338
Kpn2I	TCCGGA	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	23, 232, 384
LmnI	GCTCC	1 cut(s)	304
Lsp1109I	GCAGC	2 cut(s)	334, 635
LweI	GCATC	3 cut(s)	45, 528, 640
MaeII	ACGT	2 cut(s)	639, 651
MaeIII	GTNAC	5 cut(s)	224, 571, 598, 635, 662
MalI	GATC	3 cut(s)	25, 234, 386
MboI	GATC	3 cut(s)	23, 232, 384
MboII	GAAGA	2 cut(s)	379, 417
MhlI	GDGCHC	1 cut(s)	309
MluCI	AATT	2 cut(s)	12, 690
MlyI	GAGTC	4 cut(s)	104, 554, 595, 687
MnlI	CCTC	9 cut(s)	56, 75, 296, 349, 466, 496, 615, 621, 622
MroI	TCCGGA	1 cut(s)	235
MseI	TTAA	3 cut(s)	8, 248, 311
MslI	CAYNNNNRTG	1 cut(s)	206
MspI	CCGG	5 cut(s)	161, 221, 236, 378, 542
MspR9I	CCNGG	2 cut(s)	161, 222
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	2 cut(s)	131, 538
NciI	CCSGG	2 cut(s)	161, 222
NdeI	CATATG	1 cut(s)	527
NdeII	GATC	3 cut(s)	23, 232, 384
NlaIII	CATG	3 cut(s)	197, 322, 338
NlaIV	GGNNCC	1 cut(s)	165
NmuCI	GTSAC	3 cut(s)	571, 598, 662
NspI	RCATGY	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	322
PaeR7I	CTCGAG	1 cut(s)	518
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	2 cut(s)	324, 625
PleI	GAGTC	4 cut(s)	104, 553, 595, 686
PpsI	GAGTC	4 cut(s)	104, 553, 595, 686
Psp124BI	GAGCTC	1 cut(s)	309
PspEI	GGTNACC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	165
RsaI	GTAC	2 cut(s)	242, 684
RsaNI	GTAC	2 cut(s)	241, 683
RseI	CAYNNNNRTG	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	3 cut(s)	8, 248, 311
SatI	GCNGC	2 cut(s)	323, 624
Sau3AI	GATC	3 cut(s)	23, 232, 384
ScaI	AGTACT	1 cut(s)	242
SchI	GAGTC	4 cut(s)	104, 554, 595, 687
ScrFI	CCNGG	2 cut(s)	161, 222
SduI	GDGCHC	1 cut(s)	309
SfaNI	GCATC	3 cut(s)	45, 528, 640
SfcI	CTRYAG	1 cut(s)	645
Sfr274I	CTCGAG	1 cut(s)	518
SlaI	CTCGAG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	206
SmlI	CTYRAG	3 cut(s)	445, 458, 518
SmoI	CTYRAG	3 cut(s)	445, 458, 518
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	2 cut(s)	12, 690
SsiI	CCGC	2 cut(s)	500, 675
SstI	GAGCTC	1 cut(s)	309
StyD4I	CCNGG	2 cut(s)	159, 220
StyI	CCWWGG	1 cut(s)	30
TaaI	ACNGT	2 cut(s)	184, 205
TaiI	ACGT	2 cut(s)	642, 654
TaqI	TCGA	4 cut(s)	79, 352, 511, 519
TasI	AATT	2 cut(s)	12, 690
TatI	WGTACW	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	8, 248, 311
Tru9I	TTAA	3 cut(s)	8, 248, 311
TscAI	CASTG	2 cut(s)	576, 667
TseFI	GTSAC	3 cut(s)	571, 598, 662
TseI	GCWGC	2 cut(s)	322, 623
Tsp45I	GTSAC	3 cut(s)	571, 598, 662
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	2 cut(s)	576, 667
XceI	RCATGY	1 cut(s)	322
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XhoI	CTCGAG	1 cut(s)	518
ZraI	GACGTC	1 cut(s)	652
ZrmI	AGTACT	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.