Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005593

Physical Location & Seq

Genomic Coordinates Forward (+)

82635769 .. 82646546

Gene Structure 10778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG482600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGGTGGTTGGTTTTGCTGGATCGCTCTGGGTGTTTGGGTTGCTGAATCTCTCCGGTTCGATGGGAGTCTTTTGGATGGCGGCATCGTGGCGGTGAGGCGTGGCGTCAGAGATTTGCTGGTCTTGGCGGCGAGGTTTCCGGGTGCATGCAACTATTCTGATAAGAGGGGTGAAGACTTGATGGGCCAAGCCACTCATGTTGGGCTTTGGGTGTTGCTCTCCTTTGGGCCCAGGGCAACTGCTAGGTATGAATCTCTCAGGAACTTTGTCACCAGAGCTTGGCAACCTATCTTATATGATAATATTGGAGTTGCAGAACAATCAGCTTACAAATATATCTGGCAGTACTCAGACCCCACAGAATGTCACTGTCCGGTAAATATTGCATTCCAATCCGGTATGATCTTCTCAGTAATTGATGGGCGAATGGGGTCTTATCCTTCTGACTGTGTGGAAAAGTTCTTGAGTTTAGCCCTCAAGTGTTGTCAAGATGAGACAGATGCAAGACCCTCAATGGCAGAGGTGGTTCGAGAACTCGAAAACATATGGTCTATGATGCCGGAGACGGACAGCAAAACAACGGAATCAGTGCTCAGTAGTAGTACCGGAAAGGTAGTGAGCGATTCACCATCTTCATCCAATGCAGGGAAGAATCCCTATGTTTCTTCAGATGTCTCCGGCAGTGACCTCGTTAGTGGAGTCATACCTACAATCACACCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

241

Amino Acids

26.37

Weight (kDa)

5.0

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06840
fragaria_vesca	FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880 FvH4_3g40880
malus_domestica	MD03G1048600.v1.1 MD03G1048800.v1.1 MD11G1051300.v1.1
prunus_persica	Prupe.6G039100_v2.0.a1
pyrus_communis	pycom03g03820 pycom11g04110
rosa_chinensis	RchiOBHm_Chr5g0073661
rosa_laevigata	RLG00000036402
rosa_multiflora	Rmu_ssc0000242.1_g000018
rosa_roxburghii	Rroxscaffold_1G00007650
rosa_rugosa	Rorug05G0425700 Rorug05G0425700
rosa_samantha	Rh5AG482600 Rh5DG515800
rosa_wichuraiana	Rw5G044840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AciI	CCGC	3 cut(s)	81, 92, 128
AclWI	GGATC	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	651
AcyI	GRCGYC	1 cut(s)	105
AfaI	GTAC	2 cut(s)	347, 604
AfiI	CCNNNNNNNGG	2 cut(s)	279, 645
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	2 cut(s)	278, 326
AluI	AGCT	2 cut(s)	278, 326
Alw21I	GWGCWC	1 cut(s)	594
Alw26I	GTCTC	3 cut(s)	488, 557, 679
AlwI	GGATC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	184, 227
ApaI	GGGCCC	1 cut(s)	231
AspS9I	GGNCC	3 cut(s)	184, 227, 228
AsuC2I	CCSGG	1 cut(s)	141
AsuHPI	GGTGA	4 cut(s)	106, 182, 262, 618
BaeGI	GKGCMC	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	594
BccI	CCATC	5 cut(s)	56, 71, 175, 413, 637
BcgI	CGANNNNNNTGC	2 cut(s)	670, 704
BciT130I	CCWGG	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	141
BcoDI	GTCTC	3 cut(s)	488, 557, 679
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	82, 129
BlsI	GCNGC	2 cut(s)	83, 130
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	141, 232
BmgT120I	GGNCC	3 cut(s)	184, 227, 228
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	141, 232
BmsI	GCATC	3 cut(s)	93, 490, 546
BpiI	GAAGAC	1 cut(s)	180
BpuEI	CTTGAG	2 cut(s)	461, 484
BpuMI	CCSGG	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	2 cut(s)	230, 231
BsaWI	WCCGGW	4 cut(s)	54, 373, 395, 605
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 645
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	230, 231
BseGI	GGATG	2 cut(s)	82, 635
BseLI	CCNNNNNNNGG	2 cut(s)	279, 645
BseMII	CTCAG	4 cut(s)	271, 363, 423, 607
BseSI	GKGCMC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	186, 229
BsiHKAI	GWGCWC	1 cut(s)	594
BsiSI	CCGG	7 cut(s)	55, 140, 374, 396, 560, 606, 678
BslI	CCNNNNNNNGG	2 cut(s)	279, 645
BsmAI	GTCTC	3 cut(s)	488, 557, 679
BsmBI	CGTCTC	1 cut(s)	557
BsmI	GAATGC	1 cut(s)	386
BsnI	GGCC	2 cut(s)	186, 229
Bsp120I	GGGCCC	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	231, 594
Bsp143I	GATC	2 cut(s)	21, 402
BspACI	CCGC	3 cut(s)	81, 92, 128
BspANI	GGCC	2 cut(s)	186, 229
BspCNI	CTCAG	4 cut(s)	270, 362, 422, 606
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	230, 231
BssMI	GATC	2 cut(s)	21, 402
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	371, 449
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	148
BstDEI	CTNAG	4 cut(s)	257, 349, 409, 593
BstF5I	GGATG	2 cut(s)	82, 635
BstKTI	GATC	2 cut(s)	24, 405
BstMAI	GTCTC	3 cut(s)	488, 557, 679
BstMBI	GATC	2 cut(s)	21, 402
BstNI	CCWGG	1 cut(s)	232
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	139, 230
BstSLI	GKGCMC	1 cut(s)	231
BstV2I	GAAGAC	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	186, 229
BtsCI	GGATG	2 cut(s)	82, 635
BtsI	GCAGTG	1 cut(s)	688
BtsIMutI	CAGTG	3 cut(s)	367, 594, 688
Cac8I	GCNNGC	1 cut(s)	148
Cfr13I	GGNCC	3 cut(s)	184, 227, 228
CseI	GACGC	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	346, 603
CspCI	CAANNNNNGTGG	2 cut(s)	181, 216
CviAII	CATG	2 cut(s)	147, 197
CviJI	RGCY	7 cut(s)	186, 191, 205, 229, 278, 326, 473
CviKI_1	RGCY	7 cut(s)	186, 191, 205, 229, 278, 326, 473
CviQI	GTAC	2 cut(s)	346, 603
DdeI	CTNAG	4 cut(s)	257, 349, 409, 593
DpnI	GATC	2 cut(s)	23, 404
DpnII	GATC	2 cut(s)	21, 402
Eco24I	GRGCYC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	651
EcoRII	CCWGG	1 cut(s)	230
EcoT38I	GRGCYC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	557
FaeI	CATG	2 cut(s)	150, 200
FatI	CATG	2 cut(s)	146, 196
FauNDI	CATATG	1 cut(s)	545
Fnu4HI	GCNGC	2 cut(s)	82, 129
FokI	GGATG	2 cut(s)	89, 622
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	2 cut(s)	82, 129
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	82, 129
HaeIII	GGCC	2 cut(s)	186, 229
HapII	CCGG	7 cut(s)	55, 140, 374, 396, 560, 606, 678
HgaI	GACGC	1 cut(s)	94
Hin1I	GRCGYC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	150, 200
HinfI	GANTC	7 cut(s)	47, 67, 251, 584, 623, 652, 699
HpaII	CCGG	7 cut(s)	55, 140, 374, 396, 560, 606, 678
HphI	GGTGA	4 cut(s)	106, 182, 262, 618
Hpy188I	TCNGA	5 cut(s)	110, 160, 352, 445, 670
Hpy188III	TCNNGA	4 cut(s)	259, 463, 488, 530
HpyAV	CCTTC	1 cut(s)	450
HpyCH4III	ACNGT	2 cut(s)	371, 449
HpyCH4V	TGCA	6 cut(s)	146, 150, 314, 386, 503, 644
HpyF3I	CTNAG	4 cut(s)	257, 349, 409, 593
Hsp92I	GRCGYC	1 cut(s)	105
Hsp92II	CATG	2 cut(s)	150, 200
Kzo9I	GATC	2 cut(s)	21, 402
LweI	GCATC	3 cut(s)	93, 490, 546
MaeI	CTAG	1 cut(s)	243
MaeIII	GTNAC	3 cut(s)	268, 365, 683
MalI	GATC	2 cut(s)	23, 404
MboI	GATC	2 cut(s)	21, 402
MboII	GAAGA	5 cut(s)	185, 397, 624, 657, 661
MhlI	GDGCHC	2 cut(s)	231, 594
MluCI	AATT	1 cut(s)	414
MlyI	GAGTC	2 cut(s)	76, 708
MnlI	CCTC	7 cut(s)	90, 126, 159, 485, 514, 520, 698
MspI	CCGG	7 cut(s)	55, 140, 374, 396, 560, 606, 678
MspR9I	CCNGG	2 cut(s)	141, 232
Mva1269I	GAATGC	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	232
NciI	CCSGG	1 cut(s)	141
NdeI	CATATG	1 cut(s)	545
NdeII	GATC	2 cut(s)	21, 402
NlaIII	CATG	2 cut(s)	150, 200
NlaIV	GGNNCC	1 cut(s)	229
NmuCI	GTSAC	3 cut(s)	268, 365, 683
NspI	RCATGY	1 cut(s)	150
PaeI	GCATGC	1 cut(s)	150
PasI	CCCWGGG	1 cut(s)	231
PctI	GAATGC	1 cut(s)	386
PfeI	GAWTC	5 cut(s)	47, 251, 584, 623, 652
PflMI	CCANNNNNTGG	1 cut(s)	279
PkrI	GCNGC	2 cut(s)	83, 130
PleI	GAGTC	2 cut(s)	75, 707
PpsI	GAGTC	2 cut(s)	75, 707
Psp6I	CCWGG	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	1 cut(s)	229
PspOMI	GGGCCC	1 cut(s)	227
PspPI	GGNCC	3 cut(s)	184, 227, 228
RsaI	GTAC	2 cut(s)	347, 604
RsaNI	GTAC	2 cut(s)	346, 603
SatI	GCNGC	2 cut(s)	82, 129
Sau3AI	GATC	2 cut(s)	21, 402
Sau96I	GGNCC	3 cut(s)	184, 227, 228
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	2 cut(s)	76, 708
ScrFI	CCNGG	2 cut(s)	141, 232
SduI	GDGCHC	2 cut(s)	231, 594
SetI	ASST	9 cut(s)	137, 248, 280, 289, 328, 525, 615, 690, 709
SfaNI	GCATC	3 cut(s)	93, 490, 546
SmlI	CTYRAG	2 cut(s)	463, 476
SmoI	CTYRAG	2 cut(s)	463, 476
SphI	GCATGC	1 cut(s)	150
Sse9I	AATT	1 cut(s)	414
SsiI	CCGC	3 cut(s)	81, 92, 128
SspI	AATATT	2 cut(s)	304, 382
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	139, 230
TaaI	ACNGT	2 cut(s)	371, 449
TaqI	TCGA	3 cut(s)	60, 529, 537
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	2 cut(s)	84, 131
TfiI	GAWTC	5 cut(s)	47, 251, 584, 623, 652
TscAI	CASTG	3 cut(s)	374, 594, 688
TseFI	GTSAC	3 cut(s)	268, 365, 683
Tsp45I	GTSAC	3 cut(s)	268, 365, 683
TspDTI	ATGAA	2 cut(s)	264, 624
TspGWI	ACGGA	2 cut(s)	581, 596
TspRI	CASTG	3 cut(s)	374, 594, 688
Van91I	CCANNNNNTGG	1 cut(s)	279
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.