Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Forward (+)

59162609 .. 59168470

Gene Structure 5862 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0425700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2403 bp

ATGGAATTTGATCTGAACCATGCAGTAGTGGCTGATGTGGTGGAGAAGAATGCATATTGTAATGGAGATTGTGACAAGGGTGGTTGTGCTCATTGTTTGTCCTCTTCAACTTCTTCTTGTTCTTCAAATTCATCATCAGTTCCTGTGATTTCTTCAATCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCACTCATTTCACTACCCAAGAAAGGAAATGTGGTTGTCTACTTCCCACAAGGTCACTTGGAACAAGTTGCCTCATCATCCCCTCCTTTCTCATCCATGGAGAAGCCTCACTTTGATCTCCAGCCACAGATCTTCTGCAAGGTTGTCAATGTCCAGCTGCTTGCTAACAAGGAGAATGATGAGGTCTATACACATGTTACTTTGCTTCCTCAGGCAGAGTCGGCAGGAATGAATTTGGAAGGCAAAGAGCTTGAAGAGTTGGGGGTGGATGAGGGGGATGGGGGATCACCTACAAAATCAACCCCTCACATGTTTTGCAAAACACTTACAGCTTCTGATACCAGTACCCATGGAGGGTTCTCTGTTCCTCGCAGAGCTGCAGAAGACTGTTTCCCTCCTCTGGATTATAAGCAGCAAAGGCCCTCTCAAGAGCTTGTTGCAAAGGACCTACATGGTGTAGAATGGAGGTTTCGACATATTTATAGAGGTCAGCCACGGCGGCATCTGCTCACCACAGGGTGGAGTATTTTTATAAGCCAAAAGAATCTTGTCTCAGGGGATGCTGTGCTCTTTCTGAGGGGTGAAAATGGAGAGCTTAGGTTGGGCATTAGAAGAGCTGTTCGGCCTAGAAATGGCCTTCCTGATTCAGTTATCGGCAACCAGAATTCTTATTCTAGTGTTCTTTCCCCAGTCGCTAATGCTGTATCCACCAAGAGCATGTTCCATGTATTCTACAGTCCAAGGGCAAGCCATTCGGAGTTTGTTATTCCCTACCAAAAATATGTTAGAAGCATTGCTAATCCAGTGACCATGGGGACAAGATTCAAAATGAGATTTGATAGGGATGATTCACCAGAAAGAAGTGGTGTAGTGACCGGCATCAGTGACTTGGATCCCTATCGATGGCGAAACTCAAAATGGAGATGCTTAATGGTGAGATGGGATGACGATATAGGAAATGATCATCAAGAACGAGTCTCTCTGTGGGAGATTGATCCTTCTGTTTCTCTCCCACCTTTGAGCATTCAGTCTTCTCCAAGATTGAAGAAACTGCGGACAAGTCTGCAGGCGTTCCCACCTAACCACTCCATTCCTGCTGGAAGTTGTGGGCTTATGGACTTTGAGGAGACAGTTAAATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATGGGTTTCATATCACCCCACTATGGATGTGATACATTAAAGAGCCCTGTGGATTTTGAGATGCAGCCTTCGGCACATCAAAATCTTGCATCACATGTAACCCAGAAGGCTACTATTGACGAGTTCATGAGAGCTCACCACACCAGTTACACAGGATTTGCGGAATCTGATAGATTTCCGAAAGTCTTGCAAGGTCAAGAAATATGCCCATTGAGATCTTTGACAGGAAAAGCAAATTTCAATCTGGGCGATTGGGAGTCCAATCTTGGTAGCACATCTTTCAACAGTTATCAGGCACCCAAACCGAATATGTTCACTCTGGGTTCTGAATCGCTTCTAAACATGTATTTTCCTTATGGTGACATTCACAAGGTTGGCCAAGATCCCATGATATGCTCTAATACTACCAACTTACCCAGAGAGAGTATCAAAGTGAACCCATATTCTATTCAGATGGGAGTTACAAGAAACGAAGTTGGAAGGCCAAAAAAACCTGGTGAGCATCAGCCACAGGAAAGTACCTCTGCTCTTCCTACTTTAGTGACAAATATAAAAAGTCCGAAAGAGGTCAGCGCTGATGGAACTGCTAATGGATGTAAACTTTTCGGTTTTTCCTTATCGGGGGAAACTCCCACACTAAGTCAGAGTTCTAGTAAGAGGAGTTGTACAAAGGTTCACAAGCAAGGCAGCTTAGTGGGAAGAGCCATTGATCTCTCAAAACTGAATGGCTACGGTGACCTGCTGAGCGAACTAGAGCGGCTATTTAGCATGGAAGGCCTTCTACGAGATCCTAATAAAGGATGGCGGATCTTGTATACTGACAGTGAGAATGATGTCATGGTTGTTGGGGATGACCCATGGCATGAGTTCTGCAACGTGGTTTCCAAAATTCACATATACACCCAGGAAGAAGTGGAGAAGATGACAATCGGAATGATCAGTGATGATACCCAAAGTTGTTTGGAACAAGCTCCACCTATGCTGGAAGTGTCAAAGTCCTCATCAGTTGGGCAGCCGGATTCTTCTCCAACAGCAATTAGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

800

Amino Acids

88.56

Weight (kDa)

6.22

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B3	PF02362	168 - 269	3.2e-22	B3 DNA binding domain
ARF_AD	PF06507	317 - 397	4e-30	Auxin response factor ancillary domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	597, 722
Acc36I	ACCTGC	1 cut(s)	2103
AccB1I	GGYRCC	1 cut(s)	1651
AccB7I	CCANNNNNTGG	1 cut(s)	708
AccBSI	CCGCTC	1 cut(s)	2113
AccI	GTMKAC	2 cut(s)	228, 2171
AciI	CCGC	5 cut(s)	688, 1243, 1517, 2113, 2161
AclWI	GGATC	7 cut(s)	481, 1076, 1089, 1178, 1733, 2138, 2171
AcoI	YGGCCR	1 cut(s)	1732
AcsI	RAATTY	6 cut(s)	5, 127, 421, 853, 1591, 2244
AdeI	CACNNNGTG	1 cut(s)	708
AfaI	GTAC	3 cut(s)	535, 1876, 2023
AfeI	AGCGCT	1 cut(s)	1930
AfiI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1092, 1379, 1977, 2153
AflIII	ACRYGT	4 cut(s)	382, 498, 1450, 1698
AgsI	TTSAA	8 cut(s)	108, 126, 156, 443, 1015, 1234, 1597, 1639
AjnI	CCWGG	2 cut(s)	1849, 2259
AjuI	GAANNNNNNNTTGG	2 cut(s)	893, 925
Alw21I	GWGCWC	3 cut(s)	91, 759, 1492
Alw26I	GTCTC	3 cut(s)	745, 1171, 1310
AlwI	GGATC	7 cut(s)	481, 1076, 1089, 1178, 1733, 2138, 2171
AlwNI	CAGNNNCTG	2 cut(s)	143, 524
Aor51HI	AGCGCT	1 cut(s)	1930
AoxI	GGCC	6 cut(s)	608, 812, 823, 1732, 1838, 2131
ApeKI	GCWGC	6 cut(s)	346, 566, 601, 1420, 2043, 2368
ApoI	RAATTY	6 cut(s)	5, 127, 421, 853, 1591, 2244
Asp700I	GAANNNNTTC	3 cut(s)	1667, 1689, 2133
AspLEI	GCGC	1 cut(s)	1931
AspS9I	GGNCC	3 cut(s)	188, 609, 634
AvaII	GGWCC	2 cut(s)	188, 634
AxyI	CCTNAGG	1 cut(s)	399
BalI	TGGCCA	1 cut(s)	1734
BamHI	GGATCC	1 cut(s)	1081
BanI	GGYRCC	1 cut(s)	1651
BanII	GRGCYC	2 cut(s)	1403, 1492
BarI	GAAGNNNNNNTAC	2 cut(s)	2121, 2153
BbsI	GAAGAC	2 cut(s)	579, 1212
Bbv12I	GWGCWC	3 cut(s)	91, 759, 1492
BbvI	GCAGC	6 cut(s)	333, 553, 613, 1432, 2055, 2380
BccI	CCATC	6 cut(s)	461, 1086, 1122, 1804, 1928, 2151
BceAI	ACGGC	1 cut(s)	701
BcgI	CGANNNNNNTGC	4 cut(s)	924, 958, 1525, 1559
BciT130I	CCWGG	2 cut(s)	1851, 2261
BciVI	GTATCC	1 cut(s)	904
BclI	TGATCA	2 cut(s)	1150, 2292
BcoDI	GTCTC	3 cut(s)	745, 1171, 1310
BfaI	CTAG	4 cut(s)	816, 864, 2007, 2108
BfmI	CTRYAG	3 cut(s)	567, 922, 1253
BfoI	RGCGCY	1 cut(s)	1932
BfuAI	ACCTGC	1 cut(s)	2103
BfuI	GTATCC	1 cut(s)	904
BglI	GCCNNNNNGGC	1 cut(s)	688
BglII	AGATCT	2 cut(s)	318, 1571
BisI	GCNGC	8 cut(s)	347, 567, 602, 689, 1421, 2044, 2114, 2369
BlpI	GCTNAGC	1 cut(s)	2099
BlsI	GCNGC	8 cut(s)	348, 568, 603, 690, 1422, 2045, 2115, 2370
Bme1390I	CCNGG	2 cut(s)	1851, 2261
Bme18I	GGWCC	2 cut(s)	188, 634
BmgT120I	GGNCC	3 cut(s)	188, 609, 634
BmiI	GGNNCC	2 cut(s)	1083, 1653
BmrFI	CCNGG	2 cut(s)	1851, 2261
BmrI	ACTGGG	1 cut(s)	872
BmsI	GCATC	7 cut(s)	700, 739, 1077, 1103, 1407, 1454, 1867
BmuI	ACTGGG	1 cut(s)	872
BpiI	GAAGAC	2 cut(s)	579, 1212
BpmI	CTGGAG	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	785
Bpu1102I	GCTNAGC	1 cut(s)	2099
BpuEI	CTTGAG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	1090
BsaBI	GATNNNNATC	2 cut(s)	1086, 2282
BsaJI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2213, 2259
Bsc4I	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1092, 1379, 1977, 2153
Bse118I	RCCGGY	1 cut(s)	1064
Bse1I	ACTGG	4 cut(s)	531, 878, 992, 1500
Bse21I	CCTNAGG	1 cut(s)	399
Bse3DI	GCAATG	1 cut(s)	981
Bse8I	GATNNNNATC	2 cut(s)	1086, 2282
BseBI	CCWGG	2 cut(s)	1851, 2261
BseCI	ATCGAT	1 cut(s)	1090
BseDI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2213, 2259
BseJI	GATNNNNATC	2 cut(s)	1086, 2282
BseLI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1092, 1379, 1977, 2153
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	4 cut(s)	413, 755, 756, 2090
BseNI	ACTGG	4 cut(s)	531, 878, 992, 1500
BseRI	GAGGAG	3 cut(s)	576, 1328, 2029
BseXI	GCAGC	6 cut(s)	333, 553, 613, 1432, 2055, 2380
BshFI	GGCC	6 cut(s)	610, 814, 825, 1734, 1840, 2133
BshNI	GGYRCC	1 cut(s)	1651
BshVI	ATCGAT	1 cut(s)	1090
BsiHKAI	GWGCWC	3 cut(s)	91, 759, 1492
BsiSI	CCGG	2 cut(s)	1065, 2372
BslFI	GGGAC	1 cut(s)	1018
BslI	CCNNNNNNNGG	9 cut(s)	212, 543, 589, 708, 821, 1092, 1379, 1977, 2153
BsmAI	GTCTC	3 cut(s)	745, 1171, 1310
BsmFI	GGGAC	1 cut(s)	1018
BsmI	GAATGC	2 cut(s)	55, 1212
BsnI	GGCC	6 cut(s)	610, 814, 825, 1734, 1840, 2133
Bsp1286I	GDGCHC	4 cut(s)	91, 759, 1403, 1492
Bsp1407I	TGTACA	1 cut(s)	2021
Bsp1720I	GCTNAGC	1 cut(s)	2099
Bsp19I	CCATGG	4 cut(s)	285, 538, 999, 2213
BspACI	CCGC	5 cut(s)	688, 1243, 1517, 2113, 2161
BspANI	GGCC	6 cut(s)	610, 814, 825, 1734, 1840, 2133
BspCNI	CTCAG	4 cut(s)	412, 755, 756, 2091
BspDI	ATCGAT	1 cut(s)	1090
BspHI	TCATGA	1 cut(s)	1482
BspLI	GGNNCC	2 cut(s)	1083, 1653
BspMAI	CTGCAG	2 cut(s)	571, 1257
BspMI	ACCTGC	1 cut(s)	2103
BspPI	GGATC	7 cut(s)	481, 1076, 1089, 1178, 1733, 2138, 2171
BspQI	GCTCTTC	3 cut(s)	796, 1890, 2050
BspT107I	GGYRCC	1 cut(s)	1651
BsrBI	CCGCTC	1 cut(s)	2113
BsrDI	GCAATG	1 cut(s)	981
BsrFI	RCCGGY	1 cut(s)	1064
BsrGI	TGTACA	1 cut(s)	2021
BsrI	ACTGG	4 cut(s)	531, 878, 992, 1500
BssAI	RCCGGY	1 cut(s)	1064
BssECI	CCNNGG	7 cut(s)	285, 538, 683, 929, 999, 2213, 2259
BssNAI	GTATAC	1 cut(s)	2172
BssT1I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2213
Bst1107I	GTATAC	1 cut(s)	2172
Bst2UI	CCWGG	2 cut(s)	1851, 2261
Bst4CI	ACNGT	6 cut(s)	578, 926, 1321, 1643, 2090, 2180
Bst6I	CTCTTC	5 cut(s)	109, 438, 796, 1890, 2050
BstAUI	TGTACA	1 cut(s)	2021
BstC8I	GCNNGC	4 cut(s)	177, 351, 937, 1257
BstDEI	CTNAG	8 cut(s)	399, 742, 764, 785, 1332, 1994, 2047, 2099
BstDSI	CCRYGG	5 cut(s)	285, 538, 683, 999, 2213
BstEII	GGTNACC	1 cut(s)	2090
BstENI	CCTNNNNNAGG	1 cut(s)	2151
BstH2I	RGCGCY	1 cut(s)	1932
BstHHI	GCGC	1 cut(s)	1931
BstMAI	GTCTC	3 cut(s)	745, 1171, 1310
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 410, 607, 688, 694, 2130
BstNI	CCWGG	2 cut(s)	1851, 2261
BstNSI	RCATGY	6 cut(s)	179, 386, 502, 910, 1454, 1702
BstPI	GGTNACC	1 cut(s)	2090
BstSCI	CCNGG	2 cut(s)	1849, 2259
BstSFI	CTRYAG	3 cut(s)	567, 922, 1253
BstV1I	GCAGC	6 cut(s)	333, 553, 613, 1432, 2055, 2380
BstV2I	GAAGAC	2 cut(s)	579, 1212
BstX2I	RGATCY	6 cut(s)	318, 1081, 1571, 1738, 2143, 2163
BstYI	RGATCY	6 cut(s)	318, 1081, 1571, 1738, 2143, 2163
BstZ17I	GTATAC	1 cut(s)	2172
Bsu15I	ATCGAT	1 cut(s)	1090
Bsu36I	CCTNAGG	1 cut(s)	399
BsuI	GTATCC	1 cut(s)	904
BsuRI	GGCC	6 cut(s)	610, 814, 825, 1734, 1840, 2133
BsuTUI	ATCGAT	1 cut(s)	1090
BtgI	CCRYGG	5 cut(s)	285, 538, 683, 999, 2213
BtsIMutI	CAGTG	4 cut(s)	999, 1078, 2185, 2302
BveI	ACCTGC	1 cut(s)	2103
Cac8I	GCNNGC	4 cut(s)	177, 351, 937, 1257
CaiI	CAGNNNCTG	2 cut(s)	143, 524
CciI	TCATGA	1 cut(s)	1482
CfoI	GCGC	1 cut(s)	1931
Cfr10I	RCCGGY	1 cut(s)	1064
Cfr13I	GGNCC	3 cut(s)	188, 609, 634
ClaI	ATCGAT	1 cut(s)	1090
CsiI	ACCWGGT	1 cut(s)	1849
Csp6I	GTAC	3 cut(s)	534, 1875, 2022
CviQI	GTAC	3 cut(s)	534, 1875, 2022
DdeI	CTNAG	8 cut(s)	399, 742, 764, 785, 1332, 1994, 2047, 2099
DraIII	CACNNNGTG	1 cut(s)	708
EaeI	YGGCCR	1 cut(s)	1732
Eam1104I	CTCTTC	5 cut(s)	109, 438, 796, 1890, 2050
EarI	CTCTTC	5 cut(s)	109, 438, 796, 1890, 2050
EciI	GGCGGA	1 cut(s)	2176
Ecl136II	GAGCTC	1 cut(s)	1490
Eco130I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2213
Eco147I	AGGCCT	1 cut(s)	2133
Eco24I	GRGCYC	2 cut(s)	1403, 1492
Eco47I	GGWCC	2 cut(s)	188, 634
Eco47III	AGCGCT	1 cut(s)	1930
Eco53kI	GAGCTC	1 cut(s)	1490
Eco81I	CCTNAGG	1 cut(s)	399
Eco91I	GGTNACC	1 cut(s)	2090
EcoICRI	GAGCTC	1 cut(s)	1490
EcoNI	CCTNNNNNAGG	1 cut(s)	2151
EcoO109I	RGGNCCY	2 cut(s)	609, 634
EcoO65I	GGTNACC	1 cut(s)	2090
EcoRI	GAATTC	1 cut(s)	853
EcoRII	CCWGG	2 cut(s)	1849, 2259
EcoT14I	CCWWGG	5 cut(s)	285, 538, 929, 999, 2213
EcoT22I	ATGCAT	1 cut(s)	55
EcoT38I	GRGCYC	2 cut(s)	1403, 1492
ErhI	CCWWGG	5 cut(s)	285, 538, 929, 999, 2213
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	1018
FbaI	TGATCA	2 cut(s)	1150, 2292
FblI	GTMKAC	2 cut(s)	228, 2171
Fnu4HI	GCNGC	8 cut(s)	347, 567, 602, 689, 1421, 2044, 2114, 2369
FriOI	GRGCYC	2 cut(s)	1403, 1492
Fsp4HI	GCNGC	8 cut(s)	347, 567, 602, 689, 1421, 2044, 2114, 2369
FspBI	CTAG	4 cut(s)	816, 864, 2007, 2108
GlaI	GCGC	1 cut(s)	1930
GluI	GCNGC	8 cut(s)	347, 567, 602, 689, 1421, 2044, 2114, 2369
GsuI	CTGGAG	1 cut(s)	293
HaeII	RGCGCY	1 cut(s)	1932
HaeIII	GGCC	6 cut(s)	610, 814, 825, 1734, 1840, 2133
HapII	CCGG	2 cut(s)	1065, 2372
HhaI	GCGC	1 cut(s)	1931
Hin6I	GCGC	1 cut(s)	1929
HinP1I	GCGC	1 cut(s)	1929
HpaII	CCGG	2 cut(s)	1065, 2372
Hpy166II	GTNNAC	7 cut(s)	191, 229, 1671, 1792, 1955, 2032, 2172
Hpy188III	TCNNGA	7 cut(s)	590, 617, 830, 1157, 1349, 1483, 1553
Hpy8I	GTNNAC	7 cut(s)	191, 229, 1671, 1792, 1955, 2032, 2172
HpyAV	CCTTC	8 cut(s)	422, 836, 1197, 1434, 1456, 1830, 2123, 2144
HpyCH4III	ACNGT	6 cut(s)	578, 926, 1321, 1643, 2090, 2180
HpyCH4IV	ACGT	1 cut(s)	2232
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 410, 607, 688, 694, 2130
HpyF3I	CTNAG	8 cut(s)	399, 742, 764, 785, 1332, 1994, 2047, 2099
HpySE526I	ACGT	1 cut(s)	2232
HspAI	GCGC	1 cut(s)	1929
Ksp22I	TGATCA	2 cut(s)	1150, 2292
LguI	GCTCTTC	3 cut(s)	796, 1890, 2050
LmnI	GCTCC	2 cut(s)	166, 2332
Lsp1109I	GCAGC	6 cut(s)	333, 553, 613, 1432, 2055, 2380
LweI	GCATC	7 cut(s)	700, 739, 1077, 1103, 1407, 1454, 1867
MabI	ACCWGGT	1 cut(s)	1849
MaeI	CTAG	4 cut(s)	816, 864, 2007, 2108
MaeII	ACGT	1 cut(s)	2232
MbiI	CCGCTC	1 cut(s)	2113
MflI	RGATCY	6 cut(s)	318, 1081, 1571, 1738, 2143, 2163
MhlI	GDGCHC	4 cut(s)	91, 759, 1403, 1492
MlsI	TGGCCA	1 cut(s)	1734
MluCI	AATT	7 cut(s)	5, 127, 421, 853, 1591, 2244, 2391
MluNI	TGGCCA	1 cut(s)	1734
MlyI	GAGTC	3 cut(s)	416, 1173, 1622
MmeI	TCCRAC	1 cut(s)	1813
Mox20I	TGGCCA	1 cut(s)	1734
Mph1103I	ATGCAT	1 cut(s)	55
MroXI	GAANNNNTTC	3 cut(s)	1667, 1689, 2133
MscI	TGGCCA	1 cut(s)	1734
MseI	TTAA	3 cut(s)	1118, 1323, 1394
MslI	CAYNNNNRTG	1 cut(s)	180
Msp20I	TGGCCA	1 cut(s)	1734
MspA1I	CMGCKG	1 cut(s)	346
MspI	CCGG	2 cut(s)	1065, 2372
MspR9I	CCNGG	2 cut(s)	1851, 2261
Mva1269I	GAATGC	2 cut(s)	55, 1212
MvaI	CCWGG	2 cut(s)	1851, 2261
MwoI	GCNNNNNNNGC	6 cut(s)	29, 410, 607, 688, 694, 2130
NcoI	CCATGG	4 cut(s)	285, 538, 999, 2213
NlaIV	GGNNCC	2 cut(s)	1083, 1653
NmuCI	GTSAC	8 cut(s)	71, 242, 994, 1060, 1073, 1715, 1897, 2090
NsiI	ATGCAT	1 cut(s)	55
NspI	RCATGY	6 cut(s)	179, 386, 502, 910, 1454, 1702
PaeI	GCATGC	1 cut(s)	179
PagI	TCATGA	1 cut(s)	1482
PceI	AGGCCT	1 cut(s)	2133
PciI	ACATGT	4 cut(s)	382, 498, 1450, 1698
PciSI	GCTCTTC	3 cut(s)	796, 1890, 2050
PctI	GAATGC	2 cut(s)	55, 1212
PdmI	GAANNNNTTC	3 cut(s)	1667, 1689, 2133
PfeI	GAWTC	7 cut(s)	733, 833, 1011, 1037, 1520, 1685, 2375
PflMI	CCANNNNNTGG	1 cut(s)	708
PkrI	GCNGC	8 cut(s)	348, 568, 603, 690, 1422, 2045, 2115, 2370
PleI	GAGTC	3 cut(s)	415, 1172, 1621
PpsI	GAGTC	3 cut(s)	415, 1172, 1621
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	4 cut(s)	382, 498, 1450, 1698
PsiI	TTATAA	2 cut(s)	597, 722
Psp124BI	GAGCTC	1 cut(s)	1492
Psp5II	RGGWCCY	1 cut(s)	634
Psp6I	CCWGG	2 cut(s)	1849, 2259
PspEI	GGTNACC	1 cut(s)	2090
PspGI	CCWGG	2 cut(s)	1849, 2259
PspN4I	GGNNCC	2 cut(s)	1083, 1653
PspPI	GGNCC	3 cut(s)	188, 609, 634
PspPPI	RGGWCCY	1 cut(s)	634
PstI	CTGCAG	2 cut(s)	571, 1257
PstNI	CAGNNNCTG	2 cut(s)	143, 524
PsuI	RGATCY	6 cut(s)	318, 1081, 1571, 1738, 2143, 2163
PvuII	CAGCTG	1 cut(s)	346
RsaI	GTAC	3 cut(s)	535, 1876, 2023
RsaNI	GTAC	3 cut(s)	534, 1875, 2022
RseI	CAYNNNNRTG	1 cut(s)	180
SacI	GAGCTC	1 cut(s)	1492
SapI	GCTCTTC	3 cut(s)	796, 1890, 2050
SaqAI	TTAA	3 cut(s)	1118, 1323, 1394
SatI	GCNGC	8 cut(s)	347, 567, 602, 689, 1421, 2044, 2114, 2369
Sau96I	GGNCC	3 cut(s)	188, 609, 634
SchI	GAGTC	3 cut(s)	416, 1173, 1622
ScrFI	CCNGG	2 cut(s)	1851, 2261
SduI	GDGCHC	4 cut(s)	91, 759, 1403, 1492
SexAI	ACCWGGT	1 cut(s)	1849
SfaNI	GCATC	7 cut(s)	700, 739, 1077, 1103, 1407, 1454, 1867
SfcI	CTRYAG	3 cut(s)	567, 922, 1253
SinI	GGWCC	2 cut(s)	188, 634
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
SphI	GCATGC	1 cut(s)	179
Sse9I	AATT	7 cut(s)	5, 127, 421, 853, 1591, 2244, 2391
SseBI	AGGCCT	1 cut(s)	2133
SsiI	CCGC	5 cut(s)	688, 1243, 1517, 2113, 2161
SspMI	CTAG	4 cut(s)	816, 864, 2007, 2108
SstI	GAGCTC	1 cut(s)	1492
StuI	AGGCCT	1 cut(s)	2133
StyD4I	CCNGG	2 cut(s)	1849, 2259
StyI	CCWWGG	5 cut(s)	285, 538, 929, 999, 2213
TaaI	ACNGT	6 cut(s)	578, 926, 1321, 1643, 2090, 2180
TaiI	ACGT	1 cut(s)	2235
TaqI	TCGA	2 cut(s)	661, 1090
TasI	AATT	7 cut(s)	5, 127, 421, 853, 1591, 2244, 2391
TatI	WGTACW	1 cut(s)	2021
TauI	GCSGC	2 cut(s)	691, 2116
TfiI	GAWTC	7 cut(s)	733, 833, 1011, 1037, 1520, 1685, 2375
Tru1I	TTAA	3 cut(s)	1118, 1323, 1394
Tru9I	TTAA	3 cut(s)	1118, 1323, 1394
TscAI	CASTG	4 cut(s)	999, 1078, 2185, 2302
TseFI	GTSAC	8 cut(s)	71, 242, 994, 1060, 1073, 1715, 1897, 2090
TseI	GCWGC	6 cut(s)	346, 566, 601, 1420, 2043, 2368
Tsp45I	GTSAC	8 cut(s)	71, 242, 994, 1060, 1073, 1715, 1897, 2090
TspDTI	ATGAA	4 cut(s)	120, 434, 1354, 1471
TspRI	CASTG	4 cut(s)	999, 1078, 2185, 2302
Van91I	CCANNNNNTGG	1 cut(s)	708
VpaK11BI	GGWCC	2 cut(s)	188, 634
XagI	CCTNNNNNAGG	1 cut(s)	2151
XapI	RAATTY	6 cut(s)	5, 127, 421, 853, 1591, 2244
XceI	RCATGY	6 cut(s)	179, 386, 502, 910, 1454, 1702
XmiI	GTMKAC	2 cut(s)	228, 2171
XmnI	GAANNNNTTC	3 cut(s)	1667, 1689, 2133
XspI	CTAG	4 cut(s)	816, 864, 2007, 2108
Zsp2I	ATGCAT	1 cut(s)	55

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.