Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8424327.1

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Reverse (-)

296 .. 1292

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8424327.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

atgtacttccccaccatccatgcagcccaaattggccgggactatagtaacatcggagacaaggtttgtatccctggttggaagcccttgtggcttgacgatctcttccttgaacttttgatcccccaactgttgaatctatctaatcgtgtcccggtgctcaatggcgttttggtcaacacatgggaggagttggagccagtgacgctcagtgcatttaaagagaaccctttctttcttcgtacgtgtaccatctcctcaaacatatccgattgcggagggactctgtcggctgagcagatgactgagttggccttcgggttggaactaagtgggaaacgattcctttgggtggctcggcctcctagtcaagctaatgcatccgcaagcttcttcgaaactggctgtgatgatgcccgagatccggatcatccatcggtggccgggtttgtgactcactgcggatggaactctgtactggagagcattgttcatggcgtggcgatgattacttggccgctctacgccgagcagaaaatgaatgcgacaatgttggtggatgaaggggtggctgtgaggataaagaagcttcaggttgagcaagatgggaagaggattgcggggcgtcgtgaaatcgagacggcggtgaggatggttatggagggtgaggaaggaaagaggatgaggcagagggtcagagagcttcagagcagtgctgtgagtgcattgagtcatgatgggttgtctagtggatgtctcactcgcctgggaaacaaatggcttgacggaggcacggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

266

Amino Acids

29.42

Weight (kDa)

5.46

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	520
AccIII	TCCGGA	1 cut(s)	424
AciI	CCGC	6 cut(s)	276, 384, 462, 518, 620, 644
AclWI	GGATC	3 cut(s)	115, 416, 435
AcoI	YGGCCR	3 cut(s)	34, 441, 515
AcuI	CTGAAG	2 cut(s)	575, 689
AcyI	GRCGYC	1 cut(s)	625
AfaI	GTAC	4 cut(s)	5, 244, 250, 477
AfiI	CCNNNNNNNGG	2 cut(s)	352, 424
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	2 cut(s)	113, 136
AjnI	CCWGG	2 cut(s)	73, 765
AloI	GAACNNNNNNTCC	2 cut(s)	105, 137
AluBI	AGCT	4 cut(s)	374, 390, 589, 703
AluI	AGCT	4 cut(s)	374, 390, 589, 703
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	3 cut(s)	51, 632, 761
AlwI	GGATC	3 cut(s)	115, 416, 435
Ama87I	CYCGRG	1 cut(s)	417
Aor13HI	TCCGGA	1 cut(s)	424
AoxI	GGCC	5 cut(s)	34, 312, 359, 441, 515
ApeKI	GCWGC	1 cut(s)	23
Asp700I	GAANNNNTTC	2 cut(s)	230, 341
AsuC2I	CCSGG	3 cut(s)	38, 155, 445
AsuHPI	GGTGA	2 cut(s)	658, 677
AsuII	TTCGAA	1 cut(s)	396
AvaI	CYCGRG	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	7 cut(s)	23, 260, 442, 459, 599, 646, 731
BceAI	ACGGC	1 cut(s)	657
BciT130I	CCWGG	2 cut(s)	75, 767
BciVI	GTATCC	1 cut(s)	80
BcnI	CCSGG	3 cut(s)	38, 155, 445
BcoDI	GTCTC	3 cut(s)	51, 632, 761
BfaI	CTAG	2 cut(s)	366, 747
BfmI	CTRYAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	80
BglI	GCCNNNNNGGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	24, 518
BlpI	GCTNAGC	1 cut(s)	294
BlsI	GCNGC	2 cut(s)	25, 519
Bme1390I	CCNGG	5 cut(s)	38, 75, 155, 445, 767
BmeT110I	CYCGRG	1 cut(s)	417
BmiI	GGNNCC	1 cut(s)	198
BmrFI	CCNGG	5 cut(s)	38, 75, 155, 445, 767
BmsI	GCATC	2 cut(s)	389, 403
BpmI	CTGGAG	1 cut(s)	500
Bpu1102I	GCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	396
BpuMI	CCSGG	3 cut(s)	38, 155, 445
BsaAI	YACGTR	1 cut(s)	246
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	625
BsaJI	CCNNGG	2 cut(s)	73, 766
BsaWI	WCCGGW	1 cut(s)	424
BsaXI	ACNNNNNCTCC	3 cut(s)	48, 78, 780
Bsc4I	CCNNNNNNNGG	2 cut(s)	352, 424
Bse1I	ACTGG	3 cut(s)	200, 406, 483
Bse8I	GATNNNNATC	1 cut(s)	426
BseAI	TCCGGA	1 cut(s)	424
BseBI	CCWGG	2 cut(s)	75, 767
BseDI	CCNNGG	2 cut(s)	73, 766
BseGI	GGATG	8 cut(s)	15, 380, 430, 470, 565, 657, 687, 758
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	2 cut(s)	352, 424
BseMII	CTCAG	3 cut(s)	223, 285, 297
BseNI	ACTGG	3 cut(s)	200, 406, 483
BseRI	GAGGAG	2 cut(s)	203, 247
BseXI	GCAGC	1 cut(s)	35
BshFI	GGCC	5 cut(s)	36, 314, 361, 443, 517
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	417
BsiSI	CCGG	4 cut(s)	37, 155, 425, 444
BsiWI	CGTACG	1 cut(s)	242
BslFI	GGGAC	3 cut(s)	53, 137, 295
BslI	CCNNNNNNNGG	2 cut(s)	352, 424
BsmAI	GTCTC	3 cut(s)	51, 632, 761
BsmBI	CGTCTC	1 cut(s)	632
BsmFI	GGGAC	3 cut(s)	53, 137, 295
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	5 cut(s)	36, 314, 361, 443, 517
BsoBI	CYCGRG	1 cut(s)	417
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	424
Bsp143I	GATC	4 cut(s)	100, 120, 421, 427
Bsp1720I	GCTNAGC	1 cut(s)	294
BspACI	CCGC	6 cut(s)	276, 384, 462, 518, 620, 644
BspANI	GGCC	5 cut(s)	36, 314, 361, 443, 517
BspCNI	CTCAG	3 cut(s)	222, 286, 298
BspEI	TCCGGA	1 cut(s)	424
BspHI	TCATGA	1 cut(s)	733
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	3 cut(s)	115, 416, 435
BspT104I	TTCGAA	1 cut(s)	396
BsrBI	CCGCTC	1 cut(s)	520
BsrI	ACTGG	3 cut(s)	200, 406, 483
BssECI	CCNNGG	2 cut(s)	73, 766
BssMI	GATC	4 cut(s)	100, 120, 421, 427
BssNI	GRCGYC	1 cut(s)	625
Bst2UI	CCWGG	2 cut(s)	75, 767
Bst4CI	ACNGT	2 cut(s)	132, 796
Bst6I	CTCTTC	2 cut(s)	110, 605
BstACI	GRCGYC	1 cut(s)	625
BstBAI	YACGTR	1 cut(s)	246
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	4 cut(s)	209, 294, 306, 329
BstF5I	GGATG	8 cut(s)	15, 380, 430, 470, 565, 657, 687, 758
BstKTI	GATC	4 cut(s)	103, 123, 424, 430
BstMAI	GTCTC	3 cut(s)	51, 632, 761
BstMBI	GATC	4 cut(s)	100, 120, 421, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	91, 205, 722
BstNI	CCWGG	2 cut(s)	75, 767
BstSCI	CCNGG	5 cut(s)	36, 73, 153, 443, 765
BstSFI	CTRYAG	1 cut(s)	43
BstV1I	GCAGC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	5 cut(s)	36, 314, 361, 443, 517
BtgZI	GCGATG	1 cut(s)	518
BtsCI	GGATG	8 cut(s)	15, 380, 430, 470, 565, 657, 687, 758
BtsI	GCAGTG	2 cut(s)	457, 718
BtsIMutI	CAGTG	4 cut(s)	207, 217, 457, 718
Cac8I	GCNNGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	733
CseI	GACGC	2 cut(s)	214, 614
Csp6I	GTAC	4 cut(s)	4, 243, 249, 476
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	4 cut(s)	20, 183, 494, 734
CviQI	GTAC	4 cut(s)	4, 243, 249, 476
DdeI	CTNAG	4 cut(s)	209, 294, 306, 329
DpnI	GATC	4 cut(s)	102, 122, 423, 429
DpnII	GATC	4 cut(s)	100, 120, 421, 427
DraI	TTTAAA	1 cut(s)	220
EaeI	YGGCCR	3 cut(s)	34, 441, 515
Eam1104I	CTCTTC	2 cut(s)	110, 605
EarI	CTCTTC	2 cut(s)	110, 605
Eco57I	CTGAAG	2 cut(s)	575, 689
Eco88I	CYCGRG	1 cut(s)	417
EcoRII	CCWGG	2 cut(s)	73, 765
EcoT22I	ATGCAT	1 cut(s)	382
Esp3I	CGTCTC	1 cut(s)	632
FaeI	CATG	4 cut(s)	23, 186, 497, 737
FaiI	YATR	7 cut(s)	21, 45, 184, 266, 495, 659, 735
FaqI	GGGAC	3 cut(s)	53, 137, 295
FatI	CATG	4 cut(s)	19, 182, 493, 733
FauI	CCCGC	1 cut(s)	613
Fnu4HI	GCNGC	2 cut(s)	24, 518
FokI	GGATG	8 cut(s)	2, 367, 417, 477, 572, 664, 694, 765
Fsp4HI	GCNGC	2 cut(s)	24, 518
FspBI	CTAG	2 cut(s)	366, 747
GluI	GCNGC	2 cut(s)	24, 518
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	5 cut(s)	36, 314, 361, 443, 517
HapII	CCGG	4 cut(s)	37, 155, 425, 444
HgaI	GACGC	2 cut(s)	214, 614
Hin1I	GRCGYC	1 cut(s)	625
Hin1II	CATG	4 cut(s)	23, 186, 497, 737
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HindIII	AAGCTT	2 cut(s)	388, 587
HinfI	GANTC	5 cut(s)	136, 283, 342, 454, 730
HpaII	CCGG	4 cut(s)	37, 155, 425, 444
HphI	GGTGA	2 cut(s)	658, 677
Hpy166II	GTNNAC	2 cut(s)	178, 249
Hpy188I	TCNGA	4 cut(s)	56, 271, 698, 708
Hpy188III	TCNNGA	4 cut(s)	425, 629, 637, 734
Hpy8I	GTNNAC	2 cut(s)	178, 249
Hpy99I	CGWCG	1 cut(s)	630
HpyAV	CCTTC	3 cut(s)	325, 557, 665
HpyCH4III	ACNGT	2 cut(s)	132, 796
HpyCH4IV	ACGT	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	23, 215, 380, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	91, 205, 722
HpyF3I	CTNAG	4 cut(s)	209, 294, 306, 329
HpySE526I	ACGT	1 cut(s)	245
Hsp92I	GRCGYC	1 cut(s)	625
Hsp92II	CATG	4 cut(s)	23, 186, 497, 737
Kpn2I	TCCGGA	1 cut(s)	424
Kzo9I	GATC	4 cut(s)	100, 120, 421, 427
LmnI	GCTCC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	35
LweI	GCATC	2 cut(s)	389, 403
MaeI	CTAG	2 cut(s)	366, 747
MaeII	ACGT	1 cut(s)	245
MaeIII	GTNAC	3 cut(s)	47, 202, 451
MalI	GATC	4 cut(s)	102, 122, 423, 429
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	4 cut(s)	100, 120, 421, 427
MboII	GAAGA	4 cut(s)	97, 230, 385, 622
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	30
MlyI	GAGTC	3 cut(s)	277, 448, 739
MmeI	TCCRAC	3 cut(s)	59, 174, 303
Mph1103I	ATGCAT	1 cut(s)	382
MroI	TCCGGA	1 cut(s)	424
MroXI	GAANNNNTTC	2 cut(s)	230, 341
MseI	TTAA	1 cut(s)	219
MspI	CCGG	4 cut(s)	37, 155, 425, 444
MspR9I	CCNGG	5 cut(s)	38, 75, 155, 445, 767
Mva1269I	GAATGC	1 cut(s)	547
MvaI	CCWGG	2 cut(s)	75, 767
MwoI	GCNNNNNNNGC	3 cut(s)	91, 205, 722
NciI	CCSGG	3 cut(s)	38, 155, 445
NdeII	GATC	4 cut(s)	100, 120, 421, 427
NlaIII	CATG	4 cut(s)	23, 186, 497, 737
NlaIV	GGNNCC	1 cut(s)	198
NmeAIII	GCCGAG	2 cut(s)	337, 553
NmuCI	GTSAC	2 cut(s)	202, 451
NsiI	ATGCAT	1 cut(s)	382
NspV	TTCGAA	1 cut(s)	396
PagI	TCATGA	1 cut(s)	733
PctI	GAATGC	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	230, 341
PfeI	GAWTC	2 cut(s)	136, 342
Pfl23II	CGTACG	1 cut(s)	242
PflFI	GACNNNGTC	1 cut(s)	286
PkrI	GCNGC	2 cut(s)	25, 519
PleI	GAGTC	3 cut(s)	277, 448, 738
PpsI	GAGTC	3 cut(s)	277, 448, 738
Ppu21I	YACGTR	1 cut(s)	246
Psp6I	CCWGG	2 cut(s)	73, 765
PspGI	CCWGG	2 cut(s)	73, 765
PspLI	CGTACG	1 cut(s)	242
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	421
PsyI	GACNNNGTC	1 cut(s)	286
RsaI	GTAC	4 cut(s)	5, 244, 250, 477
RsaNI	GTAC	4 cut(s)	4, 243, 249, 476
SaqAI	TTAA	1 cut(s)	219
SatI	GCNGC	2 cut(s)	24, 518
Sau3AI	GATC	4 cut(s)	100, 120, 421, 427
SchI	GAGTC	3 cut(s)	277, 448, 739
ScrFI	CCNGG	5 cut(s)	38, 75, 155, 445, 767
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	7 cut(s)	66, 248, 376, 392, 591, 597, 705
SfaNI	GCATC	2 cut(s)	389, 403
SfcI	CTRYAG	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	396
Sse9I	AATT	1 cut(s)	30
SsiI	CCGC	6 cut(s)	276, 384, 462, 518, 620, 644
SspMI	CTAG	2 cut(s)	366, 747
StyD4I	CCNGG	5 cut(s)	36, 73, 153, 443, 765
TaaI	ACNGT	2 cut(s)	132, 796
TaiI	ACGT	1 cut(s)	248
TaqI	TCGA	2 cut(s)	396, 636
TasI	AATT	1 cut(s)	30
TatI	WGTACW	2 cut(s)	3, 475
TauI	GCSGC	1 cut(s)	520
TfiI	GAWTC	2 cut(s)	136, 342
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TscAI	CASTG	4 cut(s)	207, 217, 464, 718
TseFI	GTSAC	2 cut(s)	202, 451
TseI	GCWGC	1 cut(s)	23
Tsp45I	GTSAC	2 cut(s)	202, 451
TspDTI	ATGAA	3 cut(s)	482, 554, 576
TspGWI	ACGGA	1 cut(s)	801
TspRI	CASTG	4 cut(s)	207, 217, 464, 718
Tth111I	GACNNNGTC	1 cut(s)	286
XmnI	GAANNNNTTC	2 cut(s)	230, 341
XspI	CTAG	2 cut(s)	366, 747
Zsp2I	ATGCAT	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.