RchiOBHm_Chr5g0073631

UDP-glycosyltransferase 72E1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003060
Physical Location & Seq
Forward (+)
79694030 .. 79694821
792 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34851

Sequence Viewer

Length: 741 bp
ATGAACACATGGGAAGAACTCGAGCCGGTACCGCTGAGCACATTTAGAAACCACCCTTTCTTTGTCAATCTGCCGATGCCGACGGTTCATCCCATCATACCCCTAACCAAAGACAAAGAGGCTAATGTGGAATCAGAGTTGCTGACGTGGCTGGACAAGCAGCCGTGTGACTCGGTTGTTTACTTGTCTTTTGGCAGTGGAGGGACGCTGTCGGCGGAGCAGATGGCTGAACCTCTCGGAGCGGATAGTGCTTCGGGAAGCTTCTTCGAAGCTGGTGGTAATGTTTCCCTTACGGCGTCGTATTTTCCGGATGGGTTTCTGGAGAGGACACGAGGGGCGGGGATGGTGACGGCGACGTGGGCCCCACAAGTGGGGGTGTTGAGCCACCCCTCGGTGTATGGGTTTGTGACGCACTGCGGGTGGAACTCGGTGATGGAGAGCATGGTGCACGGGGTGGCAATGGTGGCGTGGCCACTTTACGCGGAGCAAAAGATGAATGCGAGGGCGTTGGTGGAGATGGGAGTCGCGGTGAGGCCGGAGGCGGGAGATGAGGGAGTTGTGGGGAGGGCGGAGGTGGAGAGGGTGGTGAGGTTAGTGGTGGAAGGCGAGGAAGGGAAGGAGATCAGGGGGAGGGTGAGAAAGATGCAGCAGAGTGCGGTGGAGGCTTTGGGTGGTGGTGGGTCATCTGGCGGGTGTCTAAGTCGCTTGGGGAAGGAGTGGTGGGATGGAAGTACGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

246

Amino Acids

26.43

Weight (kDa)

4.94

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 117 - 207 1.1e-20 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 28
AccB1I GGYRCC 1 cut(s) 28
AccBSI CCGCTC 1 cut(s) 242
AccII CGCG 2 cut(s) 482, 527
AccIII TCCGGA 1 cut(s) 307
AcoI YGGCCR 1 cut(s) 470
AcyI GRCGYC 1 cut(s) 296
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 2 cut(s) 30, 733
AfiI CCNNNNNNNGG 4 cut(s) 370, 371, 391, 542
AjiI CACGTC 2 cut(s) 147, 357
AluBI AGCT 2 cut(s) 261, 272
AluI AGCT 2 cut(s) 261, 272
Alw21I GWGCWC 2 cut(s) 41, 450
Alw44I GTGCAC 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 20
Aor13HI TCCGGA 1 cut(s) 307
AoxI GGCC 3 cut(s) 360, 470, 533
ApaI GGGCCC 1 cut(s) 364
ApaLI GTGCAC 1 cut(s) 446
ApeKI GCWGC 2 cut(s) 160, 646
Asp718I GGTACC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 360, 361
AsuHPI GGTGA 5 cut(s) 358, 442, 541, 598, 646
AsuII TTCGAA 1 cut(s) 267
AvaI CYCGRG 1 cut(s) 20
BaeGI GKGCMC 2 cut(s) 364, 450
BalI TGGCCA 1 cut(s) 472
BanI GGYRCC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 364
BauI CACGAG 1 cut(s) 330
Bbv12I GWGCWC 2 cut(s) 41, 450
BbvI GCAGC 2 cut(s) 172, 658
BccI CCATC 7 cut(s) 101, 217, 305, 337, 427, 511, 719
BceAI ACGGC 3 cut(s) 148, 309, 366
BisI GCNGC 2 cut(s) 161, 647
BlpI GCTNAGC 1 cut(s) 35
BlsI GCNGC 2 cut(s) 162, 648
BmeT110I CYCGRG 1 cut(s) 20
BmgBI CACGTC 2 cut(s) 147, 357
BmgT120I GGNCC 2 cut(s) 360, 361
BmiI GGNNCC 3 cut(s) 30, 362, 363
BmsI GCATC 2 cut(s) 66, 633
BpmI CTGGAG 1 cut(s) 341
Bpu1102I GCTNAGC 1 cut(s) 35
Bpu14I TTCGAA 1 cut(s) 267
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 390
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 4 cut(s) 370, 371, 391, 542
Bse118I RCCGGY 1 cut(s) 25
Bse3DI GCAATG 1 cut(s) 465
BseAI TCCGGA 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 4 cut(s) 88, 316, 348, 730
BseLI CCNNNNNNNGG 4 cut(s) 370, 371, 391, 542
BseMI GCAATG 1 cut(s) 465
BseMII CTCAG 1 cut(s) 26
BseSI GKGCMC 2 cut(s) 364, 450
BseXI GCAGC 2 cut(s) 172, 658
Bsh1236I CGCG 2 cut(s) 482, 527
BshFI GGCC 3 cut(s) 362, 472, 535
BshNI GGYRCC 1 cut(s) 28
BsiHKAI GWGCWC 2 cut(s) 41, 450
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 3 cut(s) 26, 308, 536
BslFI GGGAC 1 cut(s) 217
BslI CCNNNNNNNGG 4 cut(s) 370, 371, 391, 542
BsmFI GGGAC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 3 cut(s) 362, 472, 535
BsoBI CYCGRG 1 cut(s) 20
Bsp119I TTCGAA 1 cut(s) 267
Bsp120I GGGCCC 1 cut(s) 360
Bsp1286I GDGCHC 3 cut(s) 41, 364, 450
Bsp13I TCCGGA 1 cut(s) 307
Bsp143I GATC 1 cut(s) 621
Bsp1720I GCTNAGC 1 cut(s) 35
BspANI GGCC 3 cut(s) 362, 472, 535
BspCNI CTCAG 1 cut(s) 27
BspEI TCCGGA 1 cut(s) 307
BspFNI CGCG 2 cut(s) 482, 527
BspLI GGNNCC 3 cut(s) 30, 362, 363
BspT104I TTCGAA 1 cut(s) 267
BspT107I GGYRCC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 465
BsrFI RCCGGY 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 1 cut(s) 621
BssNI GRCGYC 1 cut(s) 296
BssSI CACGAG 1 cut(s) 330
Bst2BI CACGAG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 296
BstBI TTCGAA 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 35, 698
BstF5I GGATG 4 cut(s) 88, 316, 348, 730
BstFNI CGCG 2 cut(s) 482, 527
BstKTI GATC 1 cut(s) 624
BstMBI GATC 1 cut(s) 621
BstMWI GCNNNNNNNGC 7 cut(s) 31, 148, 157, 248, 359, 464, 662
BstSLI GKGCMC 2 cut(s) 364, 450
BstUI CGCG 2 cut(s) 482, 527
BstV1I GCAGC 2 cut(s) 172, 658
BsuRI GGCC 3 cut(s) 362, 472, 535
BtrI CACGTC 2 cut(s) 147, 357
BtsCI GGATG 4 cut(s) 88, 316, 348, 730
BtsI GCAGTG 2 cut(s) 202, 412
BtsIMutI CAGTG 2 cut(s) 202, 412
Cfr10I RCCGGY 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 360, 361
CseI GACGC 3 cut(s) 214, 285, 418
Csp6I GTAC 2 cut(s) 29, 732
CviAII CATG 2 cut(s) 9, 442
CviQI GTAC 2 cut(s) 29, 732
DdeI CTNAG 2 cut(s) 35, 698
DpnI GATC 1 cut(s) 623
DpnII GATC 1 cut(s) 621
DraIII CACNNNGTG 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 470
EciI GGCGGA 2 cut(s) 230, 584
Eco24I GRGCYC 1 cut(s) 364
Eco88I CYCGRG 1 cut(s) 20
EcoO109I RGGNCCY 1 cut(s) 361
EcoT38I GRGCYC 1 cut(s) 364
FaeI CATG 2 cut(s) 12, 445
FaiI YATR 4 cut(s) 10, 98, 399, 443
FaqI GGGAC 1 cut(s) 217
FatI CATG 2 cut(s) 8, 441
FauI CCCGC 4 cut(s) 331, 410, 535, 683
Fnu4HI GCNGC 2 cut(s) 161, 647
FokI GGATG 4 cut(s) 75, 323, 355, 737
FriOI GRGCYC 1 cut(s) 364
Fsp4HI GCNGC 2 cut(s) 161, 647
GluI GCNGC 2 cut(s) 161, 647
GsuI CTGGAG 1 cut(s) 341
HaeIII GGCC 3 cut(s) 362, 472, 535
HapII CCGG 3 cut(s) 26, 308, 536
HgaI GACGC 3 cut(s) 214, 285, 418
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 2 cut(s) 12, 445
HindIII AAGCTT 1 cut(s) 259
HinfI GANTC 3 cut(s) 131, 170, 522
HpaII CCGG 3 cut(s) 26, 308, 536
HphI GGTGA 5 cut(s) 358, 442, 541, 598, 646
Hpy166II GTNNAC 2 cut(s) 181, 448
Hpy188I TCNGA 2 cut(s) 136, 239
Hpy188III TCNNGA 3 cut(s) 255, 308, 320
Hpy8I GTNNAC 2 cut(s) 181, 448
Hpy99I CGWCG 3 cut(s) 85, 301, 358
HpyAV CCTTC 4 cut(s) 596, 605, 610, 706
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 146, 356
HpyCH4V TGCA 2 cut(s) 448, 646
HpyF10VI GCNNNNNNNGC 7 cut(s) 31, 148, 157, 248, 359, 464, 662
HpyF3I CTNAG 2 cut(s) 35, 698
HpySE526I ACGT 2 cut(s) 146, 356
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 12, 445
Kpn2I TCCGGA 1 cut(s) 307
KpnI GGTACC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 621
LmnI GCTCC 3 cut(s) 217, 239, 484
LpnPI CCDG 8 cut(s) 39, 137, 258, 305, 321, 549, 610, 672
Lsp1109I GCAGC 2 cut(s) 172, 658
LweI GCATC 2 cut(s) 66, 633
MaeII ACGT 2 cut(s) 146, 356
MaeIII GTNAC 3 cut(s) 167, 346, 406
MalI GATC 1 cut(s) 623
MbiI CCGCTC 1 cut(s) 242
MboI GATC 1 cut(s) 621
MboII GAAGA 2 cut(s) 26, 256
MhlI GDGCHC 3 cut(s) 41, 364, 450
MlsI TGGCCA 1 cut(s) 472
MluNI TGGCCA 1 cut(s) 472
MlyI GAGTC 2 cut(s) 164, 531
Mox20I TGGCCA 1 cut(s) 472
MroI TCCGGA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 472
Msp20I TGGCCA 1 cut(s) 472
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 3 cut(s) 26, 308, 536
Mva1269I GAATGC 1 cut(s) 502
MvnI CGCG 2 cut(s) 482, 527
MwoI GCNNNNNNNGC 7 cut(s) 31, 148, 157, 248, 359, 464, 662
NdeII GATC 1 cut(s) 621
NlaIII CATG 2 cut(s) 12, 445
NlaIV GGNNCC 3 cut(s) 30, 362, 363
NmuCI GTSAC 3 cut(s) 167, 346, 406
NspV TTCGAA 1 cut(s) 267
PaeR7I CTCGAG 1 cut(s) 20
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 1 cut(s) 131
PflFI GACNNNGTC 1 cut(s) 208
PkrI GCNGC 2 cut(s) 162, 648
PleI GAGTC 2 cut(s) 164, 530
PpsI GAGTC 2 cut(s) 164, 530
PspN4I GGNNCC 3 cut(s) 30, 362, 363
PspOMI GGGCCC 1 cut(s) 360
PspPI GGNCC 2 cut(s) 360, 361
PspXI VCTCGAGB 1 cut(s) 20
PsyI GACNNNGTC 1 cut(s) 208
RsaI GTAC 2 cut(s) 30, 733
RsaNI GTAC 2 cut(s) 29, 732
SatI GCNGC 2 cut(s) 161, 647
Sau3AI GATC 1 cut(s) 621
Sau96I GGNCC 2 cut(s) 360, 361
SchI GAGTC 2 cut(s) 164, 531
SduI GDGCHC 3 cut(s) 41, 364, 450
SetI ASST 7 cut(s) 149, 235, 263, 274, 359, 576, 593
SfaNI GCATC 2 cut(s) 66, 633
Sfr274I CTCGAG 1 cut(s) 20
SfuI TTCGAA 1 cut(s) 267
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 149, 359
TaqI TCGA 2 cut(s) 21, 267
TfiI GAWTC 1 cut(s) 131
TscAI CASTG 2 cut(s) 202, 419
TseFI GTSAC 3 cut(s) 167, 346, 406
TseI GCWGC 2 cut(s) 160, 646
Tsp45I GTSAC 3 cut(s) 167, 346, 406
TspDTI ATGAA 3 cut(s) 17, 77, 509
TspRI CASTG 2 cut(s) 202, 419
Tth111I GACNNNGTC 1 cut(s) 208
VneI GTGCAC 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.