Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Reverse (-)

9823966 .. 9824852

Gene Structure 887 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGATGATGGCGGTGGACGGAAAAGATACCCAGAAGCCACACGTAGCGGTGCTATCGAGTCCGGGCATGGGTCACGTGACCCCTCTCCTCGAGCTAGCCAAACGGCTTGTCGTCGACCTCCGCTTCCAGGTCAGCTTCCTTGCCATTACCACTGACGCACCACCCGCGCAGCTTCAGCTTCTCAACAACAACCCCACCCTCCCTTCCGATCTTCATGTCATCCACCTCCCTCATGTTGATGTCTCAAGCAACGACGTCATAGCAATTCGGATCCTTCAAATTGTCCGAGAGAGTCTTCGTTCACTGCCCTCGGTGCTAGCCAACTTAAACTCACGCAAACCCCCGCCAAAGGCTCTAATCGTCGATCCGTTTTGCGCCGAAGCCCTCGAGACCGCCAGCGACCACTCTATCCCAACGTATCTTTTCTTGACCGCCTCCGCTTCATTTCTGGCGTTGACCATTTTCTTCCCTACGCTTCATACAGAGGTCAAGGGAGATTATGGTAAAATCAAAGAGAGGGTTTTTCTTCCGGGTTGCATGCCCTTGTGGGTTGACGATCTTCTCCCTGATGTTCTGGTACCAGAAGTCTTGCCTCTATGCAACCGGTTCCCACTCGTCAAGGGCATTTTCGTCAACACATGGGAAGAACTCGAGCCGTGCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

221

Amino Acids

24.42

Weight (kDa)

5.77

Isoelectric Point (pI)

36.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc65I	GGTACC	1 cut(s)	577
AccB1I	GGYRCC	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	167
AciI	CCGC	8 cut(s)	11, 47, 121, 165, 344, 393, 432, 438
AclWI	GGATC	3 cut(s)	265, 278, 359
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	579
AfiI	CCNNNNNNNGG	3 cut(s)	68, 127, 349
AflIII	ACRYGT	1 cut(s)	40
AgeI	ACCGGT	1 cut(s)	603
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	4 cut(s)	94, 135, 172, 178
AluI	AGCT	4 cut(s)	94, 135, 172, 178
Alw26I	GTCTC	2 cut(s)	247, 383
AlwI	GGATC	3 cut(s)	265, 278, 359
Ama87I	CYCGRG	3 cut(s)	89, 386, 650
ApeKI	GCWGC	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
AsiGI	ACCGGT	1 cut(s)	603
Asp718I	GGTACC	1 cut(s)	577
AspLEI	GCGC	2 cut(s)	169, 377
AsuC2I	CCSGG	2 cut(s)	63, 531
AsuNHI	GCTAGC	2 cut(s)	94, 316
AvaI	CYCGRG	3 cut(s)	89, 386, 650
BamHI	GGATCC	1 cut(s)	270
BanI	GGYRCC	1 cut(s)	577
BbrPI	CACGTG	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	287
BbvI	GCAGC	1 cut(s)	181
BceAI	ACGGC	2 cut(s)	119, 640
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	2 cut(s)	63, 531
BcoDI	GTCTC	2 cut(s)	247, 383
BfaI	CTAG	2 cut(s)	95, 317
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	3 cut(s)	63, 128, 531
BmeT110I	CYCGRG	3 cut(s)	89, 386, 650
BmiI	GGNNCC	3 cut(s)	272, 579, 608
BmrFI	CCNGG	3 cut(s)	63, 128, 531
BmtI	GCTAGC	2 cut(s)	98, 320
BpiI	GAAGAC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	229
BpuMI	CCSGG	2 cut(s)	63, 531
BsaAI	YACGTR	2 cut(s)	43, 76
BsaHI	GRCGYC	1 cut(s)	255
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 127, 349
Bse118I	RCCGGY	1 cut(s)	603
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	219
BseLI	CCNNNNNNNGG	3 cut(s)	68, 127, 349
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	577
BshTI	ACCGGT	1 cut(s)	603
BsiHKCI	CYCGRG	3 cut(s)	89, 386, 650
BsiSI	CCGG	3 cut(s)	62, 530, 604
BslI	CCNNNNNNNGG	3 cut(s)	68, 127, 349
BsmAI	GTCTC	2 cut(s)	247, 383
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	3 cut(s)	89, 386, 650
Bsp143I	GATC	4 cut(s)	208, 270, 364, 556
BspACI	CCGC	8 cut(s)	11, 47, 121, 165, 344, 393, 432, 438
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	272, 579, 608
BspOI	GCTAGC	2 cut(s)	98, 320
BspPI	GGATC	3 cut(s)	265, 278, 359
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	1 cut(s)	383
BsrFI	RCCGGY	1 cut(s)	603
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	4 cut(s)	208, 270, 364, 556
BssNI	GRCGYC	1 cut(s)	255
Bst2UI	CCWGG	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	255
BstBAI	YACGTR	2 cut(s)	43, 76
BstC8I	GCNNGC	4 cut(s)	96, 318, 397, 539
BstF5I	GGATG	1 cut(s)	219
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	169, 377
BstKTI	GATC	4 cut(s)	211, 273, 367, 559
BstMAI	GTCTC	2 cut(s)	247, 383
BstMBI	GATC	4 cut(s)	208, 270, 364, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	164, 175, 313
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	541
BstSCI	CCNGG	3 cut(s)	61, 126, 529
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	1 cut(s)	181
BstV2I	GAAGAC	1 cut(s)	287
BstX2I	RGATCY	1 cut(s)	270
BstYI	RGATCY	1 cut(s)	270
BtsCI	GGATG	1 cut(s)	219
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	150, 302
Cac8I	GCNNGC	4 cut(s)	96, 318, 397, 539
CfoI	GCGC	2 cut(s)	169, 377
Cfr10I	RCCGGY	1 cut(s)	603
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	578
CspAI	ACCGGT	1 cut(s)	603
CviAII	CATG	5 cut(s)	67, 215, 233, 538, 639
CviQI	GTAC	1 cut(s)	578
DpnI	GATC	4 cut(s)	210, 272, 366, 558
DpnII	GATC	4 cut(s)	208, 270, 364, 556
Eco31I	GGTCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	76
Eco88I	CYCGRG	3 cut(s)	89, 386, 650
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	70, 218, 236, 541, 642
FaiI	YATR	9 cut(s)	68, 216, 234, 260, 480, 501, 539, 598, 640
FatI	CATG	5 cut(s)	66, 214, 232, 537, 638
FauI	CCCGC	2 cut(s)	172, 351
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	2 cut(s)	95, 317
GlaI	GCGC	2 cut(s)	168, 376
GluI	GCNGC	1 cut(s)	170
HapII	CCGG	3 cut(s)	62, 530, 604
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	2 cut(s)	169, 377
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	5 cut(s)	70, 218, 236, 541, 642
Hin6I	GCGC	2 cut(s)	167, 375
HinP1I	GCGC	2 cut(s)	167, 375
HincII	GTYRAC	4 cut(s)	115, 456, 553, 634
HindII	GTYRAC	4 cut(s)	115, 456, 553, 634
HinfI	GANTC	2 cut(s)	58, 292
HpaII	CCGG	3 cut(s)	62, 530, 604
Hpy166II	GTNNAC	6 cut(s)	16, 115, 302, 456, 553, 634
Hpy188I	TCNGA	3 cut(s)	208, 270, 287
Hpy188III	TCNNGA	2 cut(s)	388, 427
Hpy8I	GTNNAC	6 cut(s)	16, 115, 302, 456, 553, 634
Hpy99I	CGWCG	3 cut(s)	116, 257, 365
HpyAV	CCTTC	2 cut(s)	213, 284
HpyCH4IV	ACGT	4 cut(s)	42, 75, 255, 416
HpyCH4V	TGCA	3 cut(s)	537, 600, 660
HpyF10VI	GCNNNNNNNGC	3 cut(s)	164, 175, 313
HpySE526I	ACGT	4 cut(s)	42, 75, 255, 416
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	5 cut(s)	70, 218, 236, 541, 642
HspAI	GCGC	2 cut(s)	167, 375
KpnI	GGTACC	1 cut(s)	581
Kzo9I	GATC	4 cut(s)	208, 270, 364, 556
Lsp1109I	GCAGC	1 cut(s)	181
MaeI	CTAG	2 cut(s)	95, 317
MaeII	ACGT	4 cut(s)	42, 75, 255, 416
MaeIII	GTNAC	2 cut(s)	71, 76
MalI	GATC	4 cut(s)	210, 272, 366, 558
MboI	GATC	4 cut(s)	208, 270, 364, 556
MboII	GAAGA	6 cut(s)	203, 287, 457, 518, 551, 656
MflI	RGATCY	1 cut(s)	270
MluCI	AATT	2 cut(s)	264, 279
MlyI	GAGTC	2 cut(s)	67, 301
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	3 cut(s)	62, 530, 604
MspR9I	CCNGG	3 cut(s)	63, 128, 531
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	3 cut(s)	164, 175, 313
NciI	CCSGG	2 cut(s)	63, 531
NdeII	GATC	4 cut(s)	208, 270, 364, 556
NheI	GCTAGC	2 cut(s)	94, 316
NlaIII	CATG	5 cut(s)	70, 218, 236, 541, 642
NlaIV	GGNNCC	3 cut(s)	272, 579, 608
NmuCI	GTSAC	2 cut(s)	71, 76
NspI	RCATGY	1 cut(s)	541
PaeI	GCATGC	1 cut(s)	541
PaeR7I	CTCGAG	3 cut(s)	89, 386, 650
PinAI	ACCGGT	1 cut(s)	603
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	2 cut(s)	66, 300
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	2 cut(s)	66, 300
Ppu21I	YACGTR	2 cut(s)	43, 76
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	272, 579, 608
PspXI	VCTCGAGB	2 cut(s)	89, 650
PsuI	RGATCY	1 cut(s)	270
RsaI	GTAC	1 cut(s)	579
RsaNI	GTAC	1 cut(s)	578
RseI	CAYNNNNRTG	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	4 cut(s)	208, 270, 364, 556
SchI	GAGTC	2 cut(s)	67, 301
ScrFI	CCNGG	3 cut(s)	63, 128, 531
Sfr274I	CTCGAG	3 cut(s)	89, 386, 650
SlaI	CTCGAG	3 cut(s)	89, 386, 650
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	4 cut(s)	89, 244, 386, 650
SmoI	CTYRAG	4 cut(s)	89, 244, 386, 650
SphI	GCATGC	1 cut(s)	541
Sse9I	AATT	2 cut(s)	264, 279
SsiI	CCGC	8 cut(s)	11, 47, 121, 165, 344, 393, 432, 438
SspMI	CTAG	2 cut(s)	95, 317
StyD4I	CCNGG	3 cut(s)	61, 126, 529
TaiI	ACGT	4 cut(s)	45, 78, 258, 419
TaqI	TCGA	6 cut(s)	56, 90, 114, 363, 387, 651
TasI	AATT	2 cut(s)	264, 279
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	157, 309
TseFI	GTSAC	2 cut(s)	71, 76
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	2 cut(s)	71, 76
TspDTI	ATGAA	3 cut(s)	203, 432, 467
TspGWI	ACGGA	2 cut(s)	33, 357
TspRI	CASTG	2 cut(s)	157, 309
XceI	RCATGY	1 cut(s)	541
XhoI	CTCGAG	3 cut(s)	89, 386, 650
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	95, 317
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.