RchiOBHm_Chr5g0073611

UDP-glycosyltransferase 72E1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003060
Physical Location & Seq
Forward (+)
79660074 .. 79661503
1430 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34849

Sequence Viewer

Length: 1359 bp
ATGGTGATGGCGGTGGATGAAGAACACACCCAGAAGCCGCACGTAGCGATGCTATCAAGTCCGGGCGTGGGTCACGTGACCCCTCTCCTCGAGCTAGCCAAACGGCTGGTCGTCGACCTCGGCTTCCAGGTCAGCTTCCTTGCAATCACCACCGATGCACCACCCGCGCAGCTTCAGCTGCTCAACAACAACCCCACCCTCCCTTCCGATCTCCACGTCATCCACCTCCCTCATGTTGATGTGTCAAGCAACGACGTCATAGCAATTCGGATAGTTCAAATTGTCCGAGAGAGCCTTCGTTCACTGCCCTCGGTGCTAACCAACTTACACTCACATAAACCGCCGCTAAAAGCTCTGATCGTCGATCCCTTTTGCATCGAAGCCCTCGAAACCGCCGCCGACCACTCTATCCCAACGTATCTTTTCTTGACCGCCTCCGCTTCATTTCTGGCGTTGACCATCTACTTCCCTACGCTTCATGCAGATGTCAAGGGAGACTACGGTAAAATCAAAGAGAGTGTTTTTCTTCCAGGTTGCATGCCCTTGTGGGTTGACGATCTTCTCCCTGATGTTCTGATACCAGAAGTCTTGCCTCTGTGCAACCGGATCCCACTGGTCAAGGGCATTTTCGTAAACACATGGGAAGAAATCGAGCCGGTAACGCTGAGCGCATTTAGAAACCACCCTTTCTTTGTCAATCTGCCGACGCCGACGATTCATTCCATCGGACCCCTAACCAAAGACAAAGACGCTGACCGGAGGGAGTCAGGGACGCTATCGGCGGAGCAGATGATGGAGTTGGCTCATGGGTTGGAGCTGAGTGGAAAACGATTCCTCTGGGTGGCAAGACCTCCCAGAGCCGATGATGCTTCGGGAAGCTTCTTCGAAGCTGGTGTTGATGGTGCCCTTACGGCGTCGTATCTACCGGATGGGTTTTCGGAGAGGACACGAGGGGCAGGGCTGGTGACGGCGACGTGGGCCCCGCAAGTGGCGGTGTTGAGCCACCCCTCGGTGTGTGGGTTTGTGACGCACTGCGGGTGGAACTCGGTGATGGAGAGCGTGGTGCACGGGGTGGTGATGGTGGCTTGGCCGCTTTATGCAGAGCAGAAGATGAATGCAAGGGCATTGGTAGAGATGGGAGTGGCGGTGAGGCCGGAGGCGGGAGGGGATGGAGTTGTGGGCAGGGCGGAGGTGGAGAGGGTGGTGAGGATGGTGGTGGAAGGCGAAGAAGGGAAGGAGATGAGGAGGAGTACGAGGGAGATGCAACGGAGTGCAGTGGATGCTTTGGGTGGTGGTGGGTCGTCTAGTGGGGGTCTAAGTCGCTTGGGGAAGGAGTGGAGGGATGGAAGTACAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

452

Amino Acids

48.97

Weight (kDa)

5.59

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 261 - 412 4.7e-21 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 902
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 167
AclWI GGATC 3 cut(s) 359, 601, 614
AcoI YGGCCR 1 cut(s) 1088
AcuI CTGAAG 1 cut(s) 158
AcvI CACGTG 1 cut(s) 76
AcyI GRCGYC 3 cut(s) 255, 707, 914
AdeI CACNNNGTG 1 cut(s) 1072
AfaI GTAC 2 cut(s) 1252, 1351
AfiI CCNNNNNNNGG 5 cut(s) 68, 841, 988, 1009, 1160
AgsI TTSAA 1 cut(s) 278
AjiI CACGTC 2 cut(s) 217, 975
AjnI CCWGG 2 cut(s) 126, 529
AluBI AGCT 8 cut(s) 94, 135, 172, 178, 353, 817, 879, 890
AluI AGCT 8 cut(s) 94, 135, 172, 178, 353, 817, 879, 890
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 1 cut(s) 489
Alw44I GTGCAC 1 cut(s) 1064
AlwI GGATC 3 cut(s) 359, 601, 614
Ama87I CYCGRG 1 cut(s) 89
AoxI GGCC 3 cut(s) 978, 1088, 1151
ApaI GGGCCC 1 cut(s) 982
ApaLI GTGCAC 1 cut(s) 1064
ApeKI GCWGC 2 cut(s) 169, 178
ArsI GACNNNNNNTTYG 2 cut(s) 93, 125
AspLEI GCGC 2 cut(s) 169, 671
AspS9I GGNCC 3 cut(s) 728, 978, 979
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 7 cut(s) 16, 139, 976, 1060, 1087, 1159, 1216
AsuII TTCGAA 1 cut(s) 885
AsuNHI GCTAGC 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 89
AvaII GGWCC 1 cut(s) 728
BaeGI GKGCMC 3 cut(s) 907, 982, 1068
BamHI GGATCC 1 cut(s) 606
BanI GGYRCC 1 cut(s) 902
BanII GRGCYC 1 cut(s) 982
BauI CACGAG 1 cut(s) 948
BbrPI CACGTG 1 cut(s) 76
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 2 cut(s) 165, 181
BceAI ACGGC 3 cut(s) 119, 927, 984
BcgI CGANNNNNNTGC 2 cut(s) 1243, 1277
BciT130I CCWGG 2 cut(s) 128, 531
BcnI CCSGG 1 cut(s) 63
BcoDI GTCTC 1 cut(s) 489
BfaI CTAG 2 cut(s) 95, 1305
BglI GCCNNNNNGGC 1 cut(s) 911
BisI GCNGC 6 cut(s) 38, 170, 179, 344, 396, 1091
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 6 cut(s) 39, 171, 180, 345, 397, 1092
Bme1390I CCNGG 3 cut(s) 63, 128, 531
Bme18I GGWCC 1 cut(s) 728
BmeT110I CYCGRG 1 cut(s) 89
BmgBI CACGTC 2 cut(s) 217, 975
BmgT120I GGNCC 3 cut(s) 728, 978, 979
BmiI GGNNCC 5 cut(s) 608, 730, 904, 980, 981
BmrFI CCNGG 3 cut(s) 63, 128, 531
BmsI GCATC 6 cut(s) 39, 145, 384, 856, 1251, 1270
BmtI GCTAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 1 cut(s) 885
BpuMI CCSGG 1 cut(s) 63
BsaAI YACGTR 2 cut(s) 43, 76
BsaHI GRCGYC 3 cut(s) 255, 707, 914
BsaJI CCNNGG 3 cut(s) 118, 309, 1008
BsaWI WCCGGW 3 cut(s) 603, 756, 925
BsaXI ACNNNNNCTCC 2 cut(s) 1131, 1161
Bsc4I CCNNNNNNNGG 5 cut(s) 68, 841, 988, 1009, 1160
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 1 cut(s) 618
BseBI CCWGG 2 cut(s) 128, 531
BseDI CCNNGG 3 cut(s) 118, 309, 1008
BseGI GGATG 7 cut(s) 22, 219, 934, 1174, 1215, 1285, 1348
BseLI CCNNNNNNNGG 5 cut(s) 68, 841, 988, 1009, 1160
BseMII CTCAG 2 cut(s) 656, 809
BseNI ACTGG 1 cut(s) 618
BseRI GAGGAG 3 cut(s) 77, 1258, 1261
BseSI GKGCMC 3 cut(s) 907, 982, 1068
BseXI GCAGC 2 cut(s) 165, 181
BsgI GTGCAG 1 cut(s) 1293
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 3 cut(s) 980, 1090, 1153
BshNI GGYRCC 1 cut(s) 902
BsiHKAI GWGCWC 1 cut(s) 1068
BsiHKCI CYCGRG 1 cut(s) 89
BsiSI CCGG 6 cut(s) 62, 604, 656, 757, 926, 1154
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 5 cut(s) 68, 841, 988, 1009, 1160
BsmAI GTCTC 1 cut(s) 489
BsmFI GGGAC 1 cut(s) 784
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 3 cut(s) 980, 1090, 1153
BsoBI CYCGRG 1 cut(s) 89
Bsp119I TTCGAA 1 cut(s) 885
Bsp120I GGGCCC 1 cut(s) 978
Bsp1286I GDGCHC 3 cut(s) 907, 982, 1068
Bsp143I GATC 5 cut(s) 208, 357, 364, 556, 606
Bsp1720I GCTNAGC 1 cut(s) 665
BspANI GGCC 3 cut(s) 980, 1090, 1153
BspCNI CTCAG 2 cut(s) 657, 810
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 5 cut(s) 608, 730, 904, 980, 981
BspOI GCTAGC 1 cut(s) 98
BspPI GGATC 3 cut(s) 359, 601, 614
BspT104I TTCGAA 1 cut(s) 885
BspT107I GGYRCC 1 cut(s) 902
BsrFI RCCGGY 1 cut(s) 655
BsrI ACTGG 1 cut(s) 618
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 3 cut(s) 118, 309, 1008
BssMI GATC 5 cut(s) 208, 357, 364, 556, 606
BssNI GRCGYC 3 cut(s) 255, 707, 914
BssSI CACGAG 1 cut(s) 948
Bst2BI CACGAG 1 cut(s) 948
Bst2UI CCWGG 2 cut(s) 128, 531
Bst4CI ACNGT 1 cut(s) 503
BstACI GRCGYC 3 cut(s) 255, 707, 914
BstAPI GCANNNNNTGC 1 cut(s) 1280
BstBAI YACGTR 2 cut(s) 43, 76
BstBI TTCGAA 1 cut(s) 885
BstC8I GCNNGC 2 cut(s) 96, 539
BstDEI CTNAG 3 cut(s) 665, 818, 1316
BstF5I GGATG 7 cut(s) 22, 219, 934, 1174, 1215, 1285, 1348
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 2 cut(s) 169, 671
BstKTI GATC 5 cut(s) 211, 360, 367, 559, 609
BstMAI GTCTC 1 cut(s) 489
BstMBI GATC 5 cut(s) 208, 357, 364, 556, 606
BstMWI GCNNNNNNNGC 9 cut(s) 164, 175, 178, 313, 661, 866, 911, 977, 1280
BstNI CCWGG 2 cut(s) 128, 531
BstNSI RCATGY 1 cut(s) 541
BstSCI CCNGG 3 cut(s) 61, 126, 529
BstSLI GKGCMC 3 cut(s) 907, 982, 1068
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 165, 181
BstX2I RGATCY 1 cut(s) 606
BstXI CCANNNNNNTGG 1 cut(s) 106
BstYI RGATCY 1 cut(s) 606
BsuRI GGCC 3 cut(s) 980, 1090, 1153
BtgZI GCGATG 1 cut(s) 62
BtrI CACGTC 2 cut(s) 217, 975
BtsCI GGATG 7 cut(s) 22, 219, 934, 1174, 1215, 1285, 1348
BtsI GCAGTG 3 cut(s) 302, 1030, 1281
BtsIMutI CAGTG 4 cut(s) 302, 611, 1030, 1281
Cac8I GCNNGC 2 cut(s) 96, 539
CfoI GCGC 2 cut(s) 169, 671
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 3 cut(s) 728, 978, 979
CseI GACGC 5 cut(s) 715, 758, 781, 903, 1036
Csp6I GTAC 2 cut(s) 1251, 1350
CviAII CATG 5 cut(s) 233, 479, 538, 639, 806
CviQI GTAC 2 cut(s) 1251, 1350
DdeI CTNAG 3 cut(s) 665, 818, 1316
DpnI GATC 5 cut(s) 210, 359, 366, 558, 608
DpnII GATC 5 cut(s) 208, 357, 364, 556, 606
DraIII CACNNNGTG 1 cut(s) 1072
EaeI YGGCCR 1 cut(s) 1088
EciI GGCGGA 2 cut(s) 797, 1202
Eco24I GRGCYC 1 cut(s) 982
Eco47I GGWCC 1 cut(s) 728
Eco57I CTGAAG 1 cut(s) 158
Eco72I CACGTG 1 cut(s) 76
Eco88I CYCGRG 1 cut(s) 89
EcoO109I RGGNCCY 1 cut(s) 979
EcoRII CCWGG 2 cut(s) 126, 529
EcoT38I GRGCYC 1 cut(s) 982
FaeI CATG 5 cut(s) 236, 482, 541, 642, 809
FaiI YATR 8 cut(s) 234, 260, 336, 480, 539, 640, 807, 1098
FaqI GGGAC 1 cut(s) 784
FatI CATG 5 cut(s) 232, 478, 537, 638, 805
FauI CCCGC 4 cut(s) 172, 990, 1028, 1153
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 6 cut(s) 38, 170, 179, 344, 396, 1091
FokI GGATG 7 cut(s) 29, 206, 941, 1181, 1222, 1292, 1355
FriOI GRGCYC 1 cut(s) 982
Fsp4HI GCNGC 6 cut(s) 38, 170, 179, 344, 396, 1091
FspBI CTAG 2 cut(s) 95, 1305
GlaI GCGC 2 cut(s) 168, 670
GluI GCNGC 6 cut(s) 38, 170, 179, 344, 396, 1091
HaeIII GGCC 3 cut(s) 980, 1090, 1153
HapII CCGG 6 cut(s) 62, 604, 656, 757, 926, 1154
HgaI GACGC 5 cut(s) 715, 758, 781, 903, 1036
HhaI GCGC 2 cut(s) 169, 671
Hin1I GRCGYC 3 cut(s) 255, 707, 914
Hin1II CATG 5 cut(s) 236, 482, 541, 642, 809
Hin6I GCGC 2 cut(s) 167, 669
HinP1I GCGC 2 cut(s) 167, 669
HincII GTYRAC 3 cut(s) 115, 456, 553
HindII GTYRAC 3 cut(s) 115, 456, 553
HindIII AAGCTT 1 cut(s) 877
HinfI GANTC 3 cut(s) 715, 764, 831
HpaII CCGG 6 cut(s) 62, 604, 656, 757, 926, 1154
HphI GGTGA 7 cut(s) 16, 139, 976, 1060, 1087, 1159, 1216
Hpy166II GTNNAC 6 cut(s) 115, 302, 456, 553, 634, 1066
Hpy188I TCNGA 7 cut(s) 208, 270, 287, 357, 576, 728, 940
Hpy188III TCNNGA 2 cut(s) 427, 873
Hpy8I GTNNAC 6 cut(s) 115, 302, 456, 553, 634, 1066
Hpy99I CGWCG 7 cut(s) 116, 257, 365, 709, 715, 919, 976
HpyAV CCTTC 6 cut(s) 213, 305, 1214, 1223, 1228, 1324
HpyCH4III ACNGT 1 cut(s) 503
HpyCH4IV ACGT 6 cut(s) 42, 75, 216, 255, 416, 974
HpyF10VI GCNNNNNNNGC 9 cut(s) 164, 175, 178, 313, 661, 866, 911, 977, 1280
HpyF3I CTNAG 3 cut(s) 665, 818, 1316
HpySE526I ACGT 6 cut(s) 42, 75, 216, 255, 416, 974
Hsp92I GRCGYC 3 cut(s) 255, 707, 914
Hsp92II CATG 5 cut(s) 236, 482, 541, 642, 809
HspAI GCGC 2 cut(s) 167, 669
Kzo9I GATC 5 cut(s) 208, 357, 364, 556, 606
LmnI GCTCC 2 cut(s) 784, 814
Lsp1109I GCAGC 2 cut(s) 165, 181
LweI GCATC 6 cut(s) 39, 145, 384, 856, 1251, 1270
MaeI CTAG 2 cut(s) 95, 1305
MaeII ACGT 6 cut(s) 42, 75, 216, 255, 416, 974
MaeIII GTNAC 5 cut(s) 71, 76, 658, 964, 1024
MalI GATC 5 cut(s) 210, 359, 366, 558, 608
MboI GATC 5 cut(s) 208, 357, 364, 556, 606
MboII GAAGA 7 cut(s) 32, 518, 551, 656, 874, 1120, 1238
MflI RGATCY 1 cut(s) 606
MhlI GDGCHC 3 cut(s) 907, 982, 1068
MluCI AATT 2 cut(s) 264, 279
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 792
MslI CAYNNNNRTG 2 cut(s) 237, 483
MspA1I CMGCKG 1 cut(s) 178
MspI CCGG 6 cut(s) 62, 604, 656, 757, 926, 1154
MspR9I CCNGG 3 cut(s) 63, 128, 531
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 2 cut(s) 128, 531
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 9 cut(s) 164, 175, 178, 313, 661, 866, 911, 977, 1280
NciI CCSGG 1 cut(s) 63
NdeII GATC 5 cut(s) 208, 357, 364, 556, 606
NheI GCTAGC 1 cut(s) 94
NlaIII CATG 5 cut(s) 236, 482, 541, 642, 809
NlaIV GGNNCC 5 cut(s) 608, 730, 904, 980, 981
NmeAIII GCCGAG 1 cut(s) 99
NmuCI GTSAC 4 cut(s) 71, 76, 964, 1024
NspI RCATGY 1 cut(s) 541
NspV TTCGAA 1 cut(s) 885
PaeI GCATGC 1 cut(s) 541
PaeR7I CTCGAG 1 cut(s) 89
PcsI WCGNNNNNNNCGW 1 cut(s) 384
PctI GAATGC 1 cut(s) 1120
PfeI GAWTC 2 cut(s) 715, 831
PkrI GCNGC 6 cut(s) 39, 171, 180, 345, 397, 1092
PleI GAGTC 1 cut(s) 772
PmaCI CACGTG 1 cut(s) 76
PmlI CACGTG 1 cut(s) 76
PpsI GAGTC 1 cut(s) 772
Ppu21I YACGTR 2 cut(s) 43, 76
Psp6I CCWGG 2 cut(s) 126, 529
PspCI CACGTG 1 cut(s) 76
PspGI CCWGG 2 cut(s) 126, 529
PspN4I GGNNCC 5 cut(s) 608, 730, 904, 980, 981
PspOMI GGGCCC 1 cut(s) 978
PspPI GGNCC 3 cut(s) 728, 978, 979
PspXI VCTCGAGB 1 cut(s) 89
PsuI RGATCY 1 cut(s) 606
PvuII CAGCTG 1 cut(s) 178
RsaI GTAC 2 cut(s) 1252, 1351
RsaNI GTAC 2 cut(s) 1251, 1350
RseI CAYNNNNRTG 2 cut(s) 237, 483
SalI GTCGAC 1 cut(s) 113
SatI GCNGC 6 cut(s) 38, 170, 179, 344, 396, 1091
Sau3AI GATC 5 cut(s) 208, 357, 364, 556, 606
Sau96I GGNCC 3 cut(s) 728, 978, 979
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 3 cut(s) 63, 128, 531
SduI GDGCHC 3 cut(s) 907, 982, 1068
SfaNI GCATC 6 cut(s) 39, 145, 384, 856, 1251, 1270
Sfr274I CTCGAG 1 cut(s) 89
SfuI TTCGAA 1 cut(s) 885
SinI GGWCC 1 cut(s) 728
SlaI CTCGAG 1 cut(s) 89
SmiMI CAYNNNNRTG 2 cut(s) 237, 483
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
SphI GCATGC 1 cut(s) 541
Sse9I AATT 2 cut(s) 264, 279
SspMI CTAG 2 cut(s) 95, 1305
StyD4I CCNGG 3 cut(s) 61, 126, 529
TaaI ACNGT 1 cut(s) 503
TaiI ACGT 6 cut(s) 45, 78, 219, 258, 419, 977
TaqI TCGA 7 cut(s) 90, 114, 363, 378, 387, 651, 885
TasI AATT 2 cut(s) 264, 279
TatI WGTACW 1 cut(s) 1349
TauI GCSGC 4 cut(s) 40, 346, 398, 1093
TfiI GAWTC 2 cut(s) 715, 831
TscAI CASTG 4 cut(s) 309, 618, 1037, 1281
TseFI GTSAC 4 cut(s) 71, 76, 964, 1024
TseI GCWGC 2 cut(s) 169, 178
Tsp45I GTSAC 4 cut(s) 71, 76, 964, 1024
TspDTI ATGAA 5 cut(s) 33, 432, 467, 707, 1127
TspGWI ACGGA 1 cut(s) 1282
TspRI CASTG 4 cut(s) 309, 618, 1037, 1281
VneI GTGCAC 1 cut(s) 1064
VpaK11BI GGWCC 1 cut(s) 728
XceI RCATGY 1 cut(s) 541
XhoI CTCGAG 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 2 cut(s) 95, 1305
ZraI GACGTC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.