Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7965784.1

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 505

Gene Structure 505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7965784.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 505 bp

tcctgccgacgtgtcctccctcgtgaacgacgaaatgctggtcgtgcaccgtctcggcgtcatggtagaggagagcctccggtgcctgaaatcagtcctgatccagctgggaaagcccaaagccctcgtcattgacttgttttgcacacagggtttcgacgttggcaaacagctctccattccagtctacacattcttcactccctcagctgctttttgtgccttcacgctctaccaccccaccatggaccatgaagtggagggtgagttcatcgacctaccggaaccggttcaggtcccgggttgtaccccggttcgaaccgaagacctgctggaccaaattcggaaccgggagaatgatgagtacagatactacttcggtcacgtccgccggttgtgtgaggcatccggtattttcttaaacacatgggaggagctcgaaccggtccctttgaaagccattagagaaaacccgttctatcagaaaatactcactcctccggtc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGT

Protein Analysis

168

Amino Acids

19.17

Weight (kDa)

4.88

Isoelectric Point (pI)

43.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	82
AccB7I	CCANNNNNTGG	1 cut(s)	257
AccI	GTMKAC	1 cut(s)	187
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	95
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	2 cut(s)	308, 366
AfiI	CCNNNNNNNGG	2 cut(s)	245, 257
AflIII	ACRYGT	1 cut(s)	10
AgeI	ACCGGT	2 cut(s)	287, 443
AgsI	TTSAA	1 cut(s)	455
AjiI	CACGTC	2 cut(s)	11, 386
AloI	GAACNNNNNNTCC	2 cut(s)	252, 284
AluBI	AGCT	4 cut(s)	107, 173, 210, 437
AluI	AGCT	4 cut(s)	107, 173, 210, 437
Alw21I	GWGCWC	2 cut(s)	49, 439
Alw26I	GTCTC	1 cut(s)	57
Alw44I	GTGCAC	1 cut(s)	45
AlwI	GGATC	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	299
ApaLI	GTGCAC	1 cut(s)	45
ApeKI	GCWGC	1 cut(s)	210
ApoI	RAATTY	1 cut(s)	340
ArsI	GACNNNNNNTTYG	4 cut(s)	25, 57, 112, 144
AsiGI	ACCGGT	2 cut(s)	287, 443
Asp700I	GAANNNNTTC	1 cut(s)	289
AspS9I	GGNCC	4 cut(s)	248, 296, 335, 446
AsuC2I	CCSGG	4 cut(s)	300, 301, 312, 351
AsuHPI	GGTGA	1 cut(s)	276
AsuII	TTCGAA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	299
AvaII	GGWCC	4 cut(s)	248, 296, 335, 446
BaeGI	GKGCMC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	82
BanII	GRGCYC	1 cut(s)	439
BauI	CACGAG	1 cut(s)	21
BbsI	GAAGAC	1 cut(s)	331
Bbv12I	GWGCWC	2 cut(s)	49, 439
BbvCI	CCTCAGC	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	197
BcnI	CCSGG	4 cut(s)	300, 301, 312, 351
BcoDI	GTCTC	1 cut(s)	57
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	4 cut(s)	300, 301, 312, 351
Bme18I	GGWCC	4 cut(s)	248, 296, 335, 446
BmeT110I	CYCGRG	1 cut(s)	299
BmgBI	CACGTC	2 cut(s)	11, 386
BmgT120I	GGNCC	4 cut(s)	248, 296, 335, 446
BmiI	GGNNCC	5 cut(s)	84, 286, 298, 348, 448
BmrFI	CCNGG	4 cut(s)	300, 301, 312, 351
BmsI	GCATC	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	331
Bpu10I	CCTNAGC	1 cut(s)	206
Bpu14I	TTCGAA	1 cut(s)	317
BpuMI	CCSGG	4 cut(s)	300, 301, 312, 351
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	3 cut(s)	244, 299, 310
BsaWI	WCCGGW	6 cut(s)	79, 281, 287, 408, 443, 500
BsaXI	ACNNNNNCTCC	3 cut(s)	30, 252, 282
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 257
Bse118I	RCCGGY	3 cut(s)	287, 391, 443
Bse1I	ACTGG	1 cut(s)	183
BseDI	CCNNGG	3 cut(s)	244, 299, 310
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	245, 257
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	183
BseRI	GAGGAG	3 cut(s)	84, 447, 487
BseSI	GKGCMC	1 cut(s)	49
BseXI	GCAGC	1 cut(s)	197
BseYI	CCCAGC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	82
BshTI	ACCGGT	2 cut(s)	287, 443
BsiHKAI	GWGCWC	2 cut(s)	49, 439
BsiHKCI	CYCGRG	1 cut(s)	299
BslFI	GGGAC	2 cut(s)	282, 432
BslI	CCNNNNNNNGG	2 cut(s)	245, 257
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	282, 432
BsoBI	CYCGRG	1 cut(s)	299
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	49, 439
Bsp143I	GATC	1 cut(s)	100
Bsp19I	CCATGG	1 cut(s)	244
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	219
BspLI	GGNNCC	5 cut(s)	84, 286, 298, 348, 448
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	1 cut(s)	95
BspT104I	TTCGAA	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	82
BsrFI	RCCGGY	3 cut(s)	287, 391, 443
BsrI	ACTGG	1 cut(s)	183
BssAI	RCCGGY	3 cut(s)	287, 391, 443
BssECI	CCNNGG	3 cut(s)	244, 299, 310
BssMI	GATC	1 cut(s)	100
BssNI	GRCGYC	1 cut(s)	58
BssSI	CACGAG	1 cut(s)	21
BssT1I	CCWWGG	1 cut(s)	244
Bst2BI	CACGAG	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	51
BstACI	GRCGYC	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	317
BstDEI	CTNAG	1 cut(s)	206
BstDSI	CCRYGG	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	405
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	4 cut(s)	44, 82, 113, 219
BstSCI	CCNGG	4 cut(s)	298, 299, 310, 349
BstSLI	GKGCMC	1 cut(s)	49
BstV1I	GCAGC	1 cut(s)	197
BstV2I	GAAGAC	1 cut(s)	331
BtgI	CCRYGG	1 cut(s)	244
BtrI	CACGTC	2 cut(s)	11, 386
BtsCI	GGATG	1 cut(s)	405
BveI	ACCTGC	1 cut(s)	337
Cfr10I	RCCGGY	3 cut(s)	287, 391, 443
Cfr13I	GGNCC	4 cut(s)	248, 296, 335, 446
Cfr9I	CCCGGG	1 cut(s)	299
CseI	GACGC	1 cut(s)	47
Csp6I	GTAC	2 cut(s)	307, 365
CspAI	ACCGGT	2 cut(s)	287, 443
CviAII	CATG	4 cut(s)	62, 245, 252, 427
CviJI	RGCY	8 cut(s)	76, 107, 116, 123, 173, 210, 437, 459
CviKI_1	RGCY	8 cut(s)	76, 107, 116, 123, 173, 210, 437, 459
CviQI	GTAC	2 cut(s)	307, 365
DdeI	CTNAG	1 cut(s)	206
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EciI	GGCGGA	1 cut(s)	378
Ecl136II	GAGCTC	1 cut(s)	437
Eco130I	CCWWGG	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	439
Eco47I	GGWCC	4 cut(s)	248, 296, 335, 446
Eco53kI	GAGCTC	1 cut(s)	437
Eco88I	CYCGRG	1 cut(s)	299
EcoICRI	GAGCTC	1 cut(s)	437
EcoO109I	RGGNCCY	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	439
ErhI	CCWWGG	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	4 cut(s)	65, 248, 255, 430
FaiI	YATR	4 cut(s)	63, 246, 253, 428
FaqI	GGGAC	2 cut(s)	282, 432
FatI	CATG	4 cut(s)	61, 244, 251, 426
FblI	GTMKAC	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	392
FriOI	GRGCYC	1 cut(s)	439
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	1 cut(s)	111
HgaI	GACGC	1 cut(s)	47
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	4 cut(s)	65, 248, 255, 430
HphI	GGTGA	1 cut(s)	276
Hpy166II	GTNNAC	3 cut(s)	26, 47, 188
Hpy188I	TCNGA	2 cut(s)	346, 484
Hpy188III	TCNNGA	2 cut(s)	23, 98
Hpy8I	GTNNAC	3 cut(s)	26, 47, 188
Hpy99I	CGWCG	3 cut(s)	12, 33, 162
HpyAV	CCTTC	1 cut(s)	233
HpyCH4III	ACNGT	1 cut(s)	51
HpyCH4IV	ACGT	3 cut(s)	10, 160, 385
HpyCH4V	TGCA	2 cut(s)	47, 145
HpyF10VI	GCNNNNNNNGC	4 cut(s)	44, 82, 113, 219
HpyF3I	CTNAG	1 cut(s)	206
HpySE526I	ACGT	3 cut(s)	10, 160, 385
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	4 cut(s)	65, 248, 255, 430
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	434
Lsp1109I	GCAGC	1 cut(s)	197
LweI	GCATC	1 cut(s)	414
MaeII	ACGT	3 cut(s)	10, 160, 385
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	188, 336
MhlI	GDGCHC	2 cut(s)	49, 439
MluCI	AATT	1 cut(s)	340
MnlI	CCTC	9 cut(s)	26, 30, 62, 87, 135, 215, 254, 395, 425
MroXI	GAANNNNTTC	1 cut(s)	289
MseI	TTAA	1 cut(s)	420
MspA1I	CMGCKG	2 cut(s)	107, 210
MspR9I	CCNGG	4 cut(s)	300, 301, 312, 351
MwoI	GCNNNNNNNGC	4 cut(s)	44, 82, 113, 219
NciI	CCSGG	4 cut(s)	300, 301, 312, 351
NcoI	CCATGG	1 cut(s)	244
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	4 cut(s)	65, 248, 255, 430
NlaIV	GGNNCC	5 cut(s)	84, 286, 298, 348, 448
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	381
NspV	TTCGAA	1 cut(s)	317
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	289
PflMI	CCANNNNNTGG	1 cut(s)	257
PinAI	ACCGGT	2 cut(s)	287, 443
PkrI	GCNGC	1 cut(s)	212
PpuMI	RGGWCCY	1 cut(s)	296
Psp124BI	GAGCTC	1 cut(s)	439
Psp5II	RGGWCCY	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	107
PspN4I	GGNNCC	5 cut(s)	84, 286, 298, 348, 448
PspPI	GGNCC	4 cut(s)	248, 296, 335, 446
PspPPI	RGGWCCY	1 cut(s)	296
PvuII	CAGCTG	2 cut(s)	107, 210
RsaI	GTAC	2 cut(s)	308, 366
RsaNI	GTAC	2 cut(s)	307, 365
SacI	GAGCTC	1 cut(s)	439
SaqAI	TTAA	1 cut(s)	420
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	4 cut(s)	248, 296, 335, 446
ScrFI	CCNGG	4 cut(s)	300, 301, 312, 351
SduI	GDGCHC	2 cut(s)	49, 439
SfaNI	GCATC	1 cut(s)	414
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	4 cut(s)	248, 296, 335, 446
SmaI	CCCGGG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	439
StyD4I	CCNGG	4 cut(s)	298, 299, 310, 349
StyI	CCWWGG	1 cut(s)	244
TaaI	ACNGT	1 cut(s)	51
TaiI	ACGT	3 cut(s)	13, 163, 388
TaqI	TCGA	4 cut(s)	157, 274, 317, 439
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	340
TatI	WGTACW	1 cut(s)	364
Tru1I	TTAA	1 cut(s)	420
Tru9I	TTAA	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	210
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	2 cut(s)	260, 268
TspMI	CCCGGG	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	257
VneI	GTGCAC	1 cut(s)	45
VpaK11BI	GGWCC	4 cut(s)	248, 296, 335, 446
XapI	RAATTY	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	187
XmnI	GAANNNNTTC	1 cut(s)	289

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.