FvH4_3g40870

UDP-glycosyltransferase 72E1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003060
Physical Location & Seq
Forward (+)
34416844 .. 34418805
1962 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g40870.t1

Sequence Viewer

Length: 960 bp
ATGCAGAGGTCAAGGGAGACTATGGTAAAATCAAAGATAGGGTTTTGCTTCCGGGTTGCACGCCCTTGTGGGTTGCACGCCCTTGTCCCTGATCTTCTGATCCCAGAAGTCTTGCTTCTATGCAACCGGATCCCGCTCCTCAAGGGCGTTTTGGTAAACACATGGGAAGAACTCGAGCCGGTGACGTTGAACGCATTGAGAAACCATCCTTTCTTTGTCAACGTGCCGACGCCGACGGTTCATCCCATCGGACCCTTAACCAAAGACAAAGAGGCTGAAGTAGTGGGATCGGAGTTGCTGACGTGGCTGGACAAGCAGCCGTGTGACTCGGTTGTTTACGTGTCTTTCGGCAGCGGAGGGAGGCTGTCGGCGGAGCAGACGACGGAGTTGGCTCATGGCTTGGAGCTGAGCGGGAAACGATTCCTCTGGCTGGCGAGACGTCCTAAAGCAAACGATTCTTCCGGAAGCTTCTTCGAAGCTGGTTGTGGTGATGGTGCCCTTACGGCGTCGTATTTTCCGGATGGGTTTTTAGAGAGGACACAAGGGGCGGGACTCGTGACGGAGACGTGGGCCCCACAGGTGGCTGTGTTAAGCCATCCATCGGTATGTGGGTTTGTGACGCACTGCGGGTGGAACTCGGTGATGGAGAGCGTGGTGCACGGGGTGACAATGGTGGCGTGGCCGCTTTATGCGGAGCAGAAGATGAATGCGAGGGCGTTTGTGGAGATGGGAGTGGCGGTGTGGCCGGAGGCGGGAGAGGATGGAGTTGTGGGGAGGGGTGAGGTTGAGAGAGTGGTGAGGATGGTGGTGGAAGGTGAGGAAGGGAAGGAGATGAGGAGGAGGGTGAGGGAGATACAGCGGAGTGCGGCGGAGGCTTTGGGCGGTGGTGGCTTGTCTTGTGGGTGTCTCAGTCGCTTGGGGATGGAGTGGAGGGATGGAACTCATGGAAGTTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 map00940
Pfam Domains
Protein Families
UDPGT

Protein Analysis

320

Amino Acids

34.72

Weight (kDa)

5.95

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UDPGT PF00201 90 - 273 4.8e-23 UDP-glucoronosyl and UDP-glucosyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 442
AccB1I GGYRCC 1 cut(s) 494
AccBSI CCGCTC 2 cut(s) 136, 411
AccIII TCCGGA 2 cut(s) 461, 517
AclWI GGATC 4 cut(s) 94, 124, 137, 295
AcoI YGGCCR 2 cut(s) 680, 743
AcuI CTGAAG 1 cut(s) 297
AcyI GRCGYC 3 cut(s) 230, 439, 506
AdeI CACNNNGTG 1 cut(s) 664
AfiI CCNNNNNNNGG 4 cut(s) 430, 580, 601, 752
AflIII ACRYGT 1 cut(s) 339
AgsI TTSAA 2 cut(s) 190, 954
AjiI CACGTC 2 cut(s) 303, 567
AluBI AGCT 3 cut(s) 406, 468, 479
AluI AGCT 3 cut(s) 406, 468, 479
Alw21I GWGCWC 1 cut(s) 660
Alw26I GTCTC 4 cut(s) 11, 430, 557, 911
Alw44I GTGCAC 1 cut(s) 656
AlwI GGATC 4 cut(s) 94, 124, 137, 295
Ama87I CYCGRG 1 cut(s) 173
Aor13HI TCCGGA 2 cut(s) 461, 517
AoxI GGCC 3 cut(s) 570, 680, 743
ApaI GGGCCC 1 cut(s) 574
ApaLI GTGCAC 1 cut(s) 656
ApeKI GCWGC 2 cut(s) 316, 351
Asp700I GAANNNNTTC 1 cut(s) 419
AspS9I GGNCC 3 cut(s) 251, 570, 571
AsuC2I CCSGG 1 cut(s) 53
AsuHPI GGTGA 8 cut(s) 193, 500, 652, 676, 791, 808, 827, 856
AsuII TTCGAA 1 cut(s) 474
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 251
BaeGI GKGCMC 3 cut(s) 499, 574, 660
BamHI GGATCC 1 cut(s) 129
BanI GGYRCC 1 cut(s) 494
BanII GRGCYC 1 cut(s) 574
BauI CACGAG 1 cut(s) 554
Bbv12I GWGCWC 1 cut(s) 660
BbvI GCAGC 2 cut(s) 328, 363
BceAI ACGGC 2 cut(s) 304, 519
BcnI CCSGG 1 cut(s) 53
BcoDI GTCTC 4 cut(s) 11, 430, 557, 911
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 4 cut(s) 317, 352, 683, 867
BlpI GCTNAGC 1 cut(s) 407
BlsI GCNGC 4 cut(s) 318, 353, 684, 868
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 251
BmeT110I CYCGRG 1 cut(s) 173
BmgBI CACGTC 2 cut(s) 303, 567
BmgT120I GGNCC 3 cut(s) 251, 570, 571
BmiI GGNNCC 5 cut(s) 131, 253, 496, 572, 573
BmrFI CCNGG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 407
Bpu14I TTCGAA 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 340
BsaHI GRCGYC 3 cut(s) 230, 439, 506
BsaWI WCCGGW 3 cut(s) 126, 461, 517
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 4 cut(s) 430, 580, 601, 752
Bse118I RCCGGY 1 cut(s) 178
BseAI TCCGGA 2 cut(s) 461, 517
BseGI GGATG 8 cut(s) 205, 241, 526, 595, 766, 807, 927, 940
BseLI CCNNNNNNNGG 4 cut(s) 430, 580, 601, 752
BseMII CTCAG 2 cut(s) 398, 922
BseRI GAGGAG 3 cut(s) 128, 850, 853
BseSI GKGCMC 3 cut(s) 499, 574, 660
BseXI GCAGC 2 cut(s) 328, 363
BshFI GGCC 3 cut(s) 572, 682, 745
BshNI GGYRCC 1 cut(s) 494
BsiHKAI GWGCWC 1 cut(s) 660
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 6 cut(s) 52, 127, 179, 462, 518, 746
BslFI GGGAC 2 cut(s) 71, 564
BslI CCNNNNNNNGG 4 cut(s) 430, 580, 601, 752
BsmAI GTCTC 4 cut(s) 11, 430, 557, 911
BsmBI CGTCTC 2 cut(s) 430, 557
BsmFI GGGAC 2 cut(s) 71, 564
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 3 cut(s) 572, 682, 745
BsoBI CYCGRG 1 cut(s) 173
Bsp119I TTCGAA 1 cut(s) 474
Bsp120I GGGCCC 1 cut(s) 570
Bsp1286I GDGCHC 3 cut(s) 499, 574, 660
Bsp13I TCCGGA 2 cut(s) 461, 517
Bsp143I GATC 4 cut(s) 91, 99, 129, 287
Bsp1720I GCTNAGC 1 cut(s) 407
BspANI GGCC 3 cut(s) 572, 682, 745
BspCNI CTCAG 2 cut(s) 399, 921
BspEI TCCGGA 2 cut(s) 461, 517
BspLI GGNNCC 5 cut(s) 131, 253, 496, 572, 573
BspPI GGATC 4 cut(s) 94, 124, 137, 295
BspT104I TTCGAA 1 cut(s) 474
BspT107I GGYRCC 1 cut(s) 494
BsrBI CCGCTC 2 cut(s) 136, 411
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 4 cut(s) 91, 99, 129, 287
BssNI GRCGYC 3 cut(s) 230, 439, 506
BssSI CACGAG 1 cut(s) 554
Bst2BI CACGAG 1 cut(s) 554
Bst4CI ACNGT 1 cut(s) 238
BstACI GRCGYC 3 cut(s) 230, 439, 506
BstBAI YACGTR 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 474
BstC8I GCNNGC 3 cut(s) 61, 78, 432
BstDEI CTNAG 2 cut(s) 407, 908
BstF5I GGATG 8 cut(s) 205, 241, 526, 595, 766, 807, 927, 940
BstKTI GATC 4 cut(s) 94, 102, 132, 290
BstMAI GTCTC 4 cut(s) 11, 430, 557, 911
BstMBI GATC 4 cut(s) 91, 99, 129, 287
BstMWI GCNNNNNNNGC 5 cut(s) 304, 313, 503, 872, 888
BstSCI CCNGG 1 cut(s) 51
BstSLI GKGCMC 3 cut(s) 499, 574, 660
BstV1I GCAGC 2 cut(s) 328, 363
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 3 cut(s) 572, 682, 745
BtrI CACGTC 2 cut(s) 303, 567
BtsCI GGATG 8 cut(s) 205, 241, 526, 595, 766, 807, 927, 940
BtsI GCAGTG 1 cut(s) 622
BtsIMutI CAGTG 1 cut(s) 622
Cac8I GCNNGC 3 cut(s) 61, 78, 432
Cfr10I RCCGGY 1 cut(s) 178
Cfr13I GGNCC 3 cut(s) 251, 570, 571
CseI GACGC 3 cut(s) 238, 495, 628
CviAII CATG 3 cut(s) 162, 395, 944
DdeI CTNAG 2 cut(s) 407, 908
DpnI GATC 4 cut(s) 93, 101, 131, 289
DpnII GATC 4 cut(s) 91, 99, 129, 287
DraIII CACNNNGTG 1 cut(s) 664
EaeI YGGCCR 2 cut(s) 680, 743
EciI GGCGGA 2 cut(s) 386, 884
Eco24I GRGCYC 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 251
Eco57I CTGAAG 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 173
EcoO109I RGGNCCY 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 574
Esp3I CGTCTC 2 cut(s) 430, 557
FaeI CATG 3 cut(s) 165, 398, 947
FaiI YATR 7 cut(s) 23, 121, 163, 396, 607, 690, 945
FalI AAGNNNNNCTT 2 cut(s) 99, 131
FaqI GGGAC 2 cut(s) 71, 564
FatI CATG 3 cut(s) 161, 394, 943
FauI CCCGC 5 cut(s) 141, 404, 541, 620, 745
Fnu4HI GCNGC 4 cut(s) 317, 352, 683, 867
FokI GGATG 8 cut(s) 192, 228, 533, 582, 773, 814, 934, 947
FriOI GRGCYC 1 cut(s) 574
Fsp4HI GCNGC 4 cut(s) 317, 352, 683, 867
GluI GCNGC 4 cut(s) 317, 352, 683, 867
HaeIII GGCC 3 cut(s) 572, 682, 745
HapII CCGG 6 cut(s) 52, 127, 179, 462, 518, 746
HgaI GACGC 3 cut(s) 238, 495, 628
Hin1I GRCGYC 3 cut(s) 230, 439, 506
Hin1II CATG 3 cut(s) 165, 398, 947
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HindIII AAGCTT 1 cut(s) 466
HinfI GANTC 4 cut(s) 326, 420, 455, 552
HpaII CCGG 6 cut(s) 52, 127, 179, 462, 518, 746
HphI GGTGA 8 cut(s) 193, 500, 652, 676, 791, 808, 827, 856
Hpy166II GTNNAC 4 cut(s) 157, 220, 337, 658
Hpy188I TCNGA 3 cut(s) 99, 251, 292
Hpy188III TCNNGA 3 cut(s) 462, 518, 556
Hpy8I GTNNAC 4 cut(s) 157, 220, 337, 658
Hpy99I CGWCG 4 cut(s) 232, 238, 385, 511
HpyAV CCTTC 3 cut(s) 806, 815, 820
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4IV ACGT 6 cut(s) 185, 222, 302, 339, 439, 566
HpyCH4V TGCA 5 cut(s) 4, 59, 76, 123, 658
HpyF10VI GCNNNNNNNGC 5 cut(s) 304, 313, 503, 872, 888
HpyF3I CTNAG 2 cut(s) 407, 908
HpySE526I ACGT 6 cut(s) 185, 222, 302, 339, 439, 566
Hsp92I GRCGYC 3 cut(s) 230, 439, 506
Hsp92II CATG 3 cut(s) 165, 398, 947
Kpn2I TCCGGA 2 cut(s) 461, 517
Kzo9I GATC 4 cut(s) 91, 99, 129, 287
LmnI GCTCC 4 cut(s) 141, 373, 403, 694
Lsp1109I GCAGC 2 cut(s) 328, 363
MaeII ACGT 6 cut(s) 185, 222, 302, 339, 439, 566
MaeIII GTNAC 5 cut(s) 181, 323, 556, 616, 664
MalI GATC 4 cut(s) 93, 101, 131, 289
MbiI CCGCTC 2 cut(s) 136, 411
MboI GATC 4 cut(s) 91, 99, 129, 287
MboII GAAGA 5 cut(s) 86, 179, 450, 463, 712
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 3 cut(s) 499, 574, 660
MlyI GAGTC 2 cut(s) 320, 546
MroI TCCGGA 2 cut(s) 461, 517
MroXI GAANNNNTTC 1 cut(s) 419
MseI TTAA 2 cut(s) 257, 590
MslI CAYNNNNRTG 1 cut(s) 604
MspA1I CMGCKG 2 cut(s) 354, 859
MspI CCGG 6 cut(s) 52, 127, 179, 462, 518, 746
MspR9I CCNGG 1 cut(s) 53
Mva1269I GAATGC 1 cut(s) 712
MwoI GCNNNNNNNGC 5 cut(s) 304, 313, 503, 872, 888
NciI CCSGG 1 cut(s) 53
NdeII GATC 4 cut(s) 91, 99, 129, 287
NlaIII CATG 3 cut(s) 165, 398, 947
NlaIV GGNNCC 5 cut(s) 131, 253, 496, 572, 573
NmuCI GTSAC 5 cut(s) 181, 323, 556, 616, 664
NspV TTCGAA 1 cut(s) 474
PaeR7I CTCGAG 1 cut(s) 173
PctI GAATGC 1 cut(s) 712
PdmI GAANNNNTTC 1 cut(s) 419
PfeI GAWTC 2 cut(s) 420, 455
PkrI GCNGC 4 cut(s) 318, 353, 684, 868
PleI GAGTC 2 cut(s) 320, 546
PpsI GAGTC 2 cut(s) 320, 546
Ppu21I YACGTR 1 cut(s) 340
PspN4I GGNNCC 5 cut(s) 131, 253, 496, 572, 573
PspOMI GGGCCC 1 cut(s) 570
PspPI GGNCC 3 cut(s) 251, 570, 571
PspXI VCTCGAGB 1 cut(s) 173
PsuI RGATCY 1 cut(s) 129
RseI CAYNNNNRTG 1 cut(s) 604
SaqAI TTAA 2 cut(s) 257, 590
SatI GCNGC 4 cut(s) 317, 352, 683, 867
Sau3AI GATC 4 cut(s) 91, 99, 129, 287
Sau96I GGNCC 3 cut(s) 251, 570, 571
SchI GAGTC 2 cut(s) 320, 546
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 3 cut(s) 499, 574, 660
Sfr274I CTCGAG 1 cut(s) 173
SfuI TTCGAA 1 cut(s) 474
SinI GGWCC 1 cut(s) 251
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 604
SmlI CTYRAG 2 cut(s) 140, 173
SmoI CTYRAG 2 cut(s) 140, 173
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 1 cut(s) 238
TaiI ACGT 6 cut(s) 188, 225, 305, 342, 442, 569
TaqI TCGA 2 cut(s) 174, 474
TauI GCSGC 2 cut(s) 685, 869
TfiI GAWTC 2 cut(s) 420, 455
Tru1I TTAA 2 cut(s) 257, 590
Tru9I TTAA 2 cut(s) 257, 590
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 5 cut(s) 181, 323, 556, 616, 664
TseI GCWGC 2 cut(s) 316, 351
Tsp45I GTSAC 5 cut(s) 181, 323, 556, 616, 664
TspDTI ATGAA 2 cut(s) 230, 719
TspGWI ACGGA 2 cut(s) 398, 575
TspRI CASTG 1 cut(s) 629
VneI GTGCAC 1 cut(s) 656
VpaK11BI GGWCC 1 cut(s) 251
XhoI CTCGAG 1 cut(s) 173
XmnI GAANNNNTTC 1 cut(s) 419
ZraI GACGTC 1 cut(s) 440
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.