Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Forward (+)

79988849 .. 79989367

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG503300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGACGGCGGTGGATGGAAAAGACACCCAGAAGCCACACGTAGTGGTGCTATCGAGTCCGGGCATGGGTCACGTGACCCCTCTCCTCAAGCTAGCCAAACGGCTGGTCGTCGACCTCCCCTTCCAGGTCAGCTTCCTTGCCATCACCACTGACACACCACCCGTGCAGCTTCAGCTTCAGCTTCTCAACAACAACCCCACCCTCCCTTTTGATCTCCACATCATCCACCTCCCTCATGTTGATGTGTCAAGCAATGACATCATAGCAATTCGGATCCTTCAAATTGTCCGAGAGAGCCTTCGTTTACTGCCCTCAGTGCTAACCAACTTAAACTCACTCAAACCGCCGCTAAAGGCTCTAAACGTCGTTCCGTTTTGTGCTGAAGCCCTCGAGACCGCCAGCGACCATTCTATCCCAATGTATCTTTTCTTGACCGCCTCCGCTTCATTTCTGGCGTTGACCATTTACTTCCCTACGCTTCATGCAGAGGTCAAGGGAGATTATGGTAAAATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

172

Amino Acids

18.86

Weight (kDa)

7.06

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	6 cut(s)	8, 344, 347, 396, 435, 441
AclWI	GGATC	2 cut(s)	268, 281
AcuI	CTGAAG	3 cut(s)	155, 161, 402
AcvI	CACGTG	1 cut(s)	73
AdeI	CACNNNGTG	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	65, 124
AflIII	ACRYGT	1 cut(s)	37
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	5 cut(s)	91, 132, 169, 175, 181
AluI	AGCT	5 cut(s)	91, 132, 169, 175, 181
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	2 cut(s)	268, 281
Ama87I	CYCGRG	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	90, 122
AsuC2I	CCSGG	1 cut(s)	60
AsuHPI	GGTGA	1 cut(s)	136
AsuNHI	GCTAGC	1 cut(s)	91
AvaI	CYCGRG	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	73
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	2 cut(s)	8, 149
BceAI	ACGGC	2 cut(s)	21, 116
BciT130I	CCWGG	1 cut(s)	125
BcnI	CCSGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	1 cut(s)	92
BisI	GCNGC	2 cut(s)	167, 347
BlsI	GCNGC	2 cut(s)	168, 348
Bme1390I	CCNGG	2 cut(s)	60, 125
BmeT110I	CYCGRG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	60, 125
BmtI	GCTAGC	1 cut(s)	95
BpuEI	CTTGAG	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	60
BsaAI	YACGTR	2 cut(s)	40, 73
BsaI	GGTCTC	1 cut(s)	386
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 124
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	19, 222
BseLI	CCNNNNNNNGG	2 cut(s)	65, 124
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	178
BsgI	GTGCAG	1 cut(s)	185
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	59
BslI	CCNNNNNNNGG	2 cut(s)	65, 124
BsmAI	GTCTC	1 cut(s)	386
Bso31I	GGTCTC	1 cut(s)	386
BsoBI	CYCGRG	1 cut(s)	389
Bsp143I	GATC	2 cut(s)	211, 273
BspACI	CCGC	6 cut(s)	8, 344, 347, 396, 435, 441
BspCNI	CTCAG	1 cut(s)	326
BspLI	GGNNCC	1 cut(s)	275
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	2 cut(s)	268, 281
BspTNI	GGTCTC	1 cut(s)	386
BsrDI	GCAATG	1 cut(s)	259
BssMI	GATC	2 cut(s)	211, 273
Bst2UI	CCWGG	1 cut(s)	125
BstBAI	YACGTR	2 cut(s)	40, 73
BstC8I	GCNNGC	2 cut(s)	93, 400
BstDEI	CTNAG	1 cut(s)	313
BstF5I	GGATG	2 cut(s)	19, 222
BstKTI	GATC	2 cut(s)	214, 276
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	211, 273
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 316
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	58, 123
BstV1I	GCAGC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	273
BstXI	CCANNNNNNTGG	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	273
BtsCI	GGATG	2 cut(s)	19, 222
BtsIMutI	CAGTG	2 cut(s)	147, 321
Cac8I	GCNNGC	2 cut(s)	93, 400
CviAII	CATG	3 cut(s)	64, 236, 482
DdeI	CTNAG	1 cut(s)	313
DpnI	GATC	2 cut(s)	213, 275
DpnII	GATC	2 cut(s)	211, 273
DraIII	CACNNNGTG	1 cut(s)	43
Eco31I	GGTCTC	1 cut(s)	386
Eco57I	CTGAAG	3 cut(s)	155, 161, 402
Eco72I	CACGTG	1 cut(s)	73
Eco88I	CYCGRG	1 cut(s)	389
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	67, 239, 485
FaiI	YATR	5 cut(s)	65, 237, 263, 483, 504
FatI	CATG	3 cut(s)	63, 235, 481
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	167, 347
FokI	GGATG	2 cut(s)	26, 209
Fsp4HI	GCNGC	2 cut(s)	167, 347
FspBI	CTAG	1 cut(s)	92
GluI	GCNGC	2 cut(s)	167, 347
HapII	CCGG	1 cut(s)	59
Hin1II	CATG	3 cut(s)	67, 239, 485
HincII	GTYRAC	2 cut(s)	112, 459
HindII	GTYRAC	2 cut(s)	112, 459
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	1 cut(s)	59
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	112, 305, 459
Hpy188I	TCNGA	2 cut(s)	273, 290
Hpy188III	TCNNGA	2 cut(s)	391, 430
Hpy8I	GTNNAC	3 cut(s)	112, 305, 459
Hpy99I	CGWCG	2 cut(s)	113, 368
HpyAV	CCTTC	3 cut(s)	130, 287, 308
HpyCH4IV	ACGT	3 cut(s)	39, 72, 363
HpyCH4V	TGCA	2 cut(s)	166, 485
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 316
HpyF3I	CTNAG	1 cut(s)	313
HpySE526I	ACGT	3 cut(s)	39, 72, 363
Hsp92II	CATG	3 cut(s)	67, 239, 485
Kzo9I	GATC	2 cut(s)	211, 273
LpnPI	CCDG	7 cut(s)	41, 72, 89, 110, 137, 412, 437
Lsp1109I	GCAGC	1 cut(s)	178
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	3 cut(s)	39, 72, 363
MaeIII	GTNAC	2 cut(s)	68, 73
MalI	GATC	2 cut(s)	213, 275
MboI	GATC	2 cut(s)	211, 273
MflI	RGATCY	1 cut(s)	273
MluCI	AATT	2 cut(s)	267, 282
MlyI	GAGTC	1 cut(s)	64
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	59
MspR9I	CCNGG	2 cut(s)	60, 125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	172, 316
NciI	CCSGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	211, 273
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	3 cut(s)	67, 239, 485
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	2 cut(s)	68, 73
PaeR7I	CTCGAG	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	168, 348
PleI	GAGTC	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	73
PmlI	CACGTG	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	2 cut(s)	40, 73
Psp6I	CCWGG	1 cut(s)	123
PspCI	CACGTG	1 cut(s)	73
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	1 cut(s)	275
PsuI	RGATCY	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	2 cut(s)	167, 347
Sau3AI	GATC	2 cut(s)	211, 273
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	2 cut(s)	60, 125
Sfr274I	CTCGAG	1 cut(s)	389
SlaI	CTCGAG	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	2 cut(s)	86, 389
SmoI	CTYRAG	2 cut(s)	86, 389
Sse9I	AATT	2 cut(s)	267, 282
SsiI	CCGC	6 cut(s)	8, 344, 347, 396, 435, 441
SspMI	CTAG	1 cut(s)	92
StyD4I	CCNGG	2 cut(s)	58, 123
TaiI	ACGT	3 cut(s)	42, 75, 366
TaqI	TCGA	3 cut(s)	53, 111, 390
TasI	AATT	2 cut(s)	267, 282
TauI	GCSGC	1 cut(s)	349
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TscAI	CASTG	2 cut(s)	154, 321
TseFI	GTSAC	2 cut(s)	68, 73
TseI	GCWGC	1 cut(s)	166
Tsp45I	GTSAC	2 cut(s)	68, 73
TspDTI	ATGAA	2 cut(s)	435, 470
TspGWI	ACGGA	1 cut(s)	360
TspRI	CASTG	2 cut(s)	154, 321
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	1 cut(s)	111
XspI	CTAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.