Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003060

Physical Location & Seq

Genomic Coordinates Forward (+)

80162389 .. 80163295

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG515300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTGATGGCGGTGGATGAAGAACACATCCAGAAGCCGCACGTAGCGATGCTATCAAGTCCCGGAGTGGGTCACGTGACCCCTCTCCTCGAGCTAGCCAAACGGCTGGTCGTCGACCTCGGCTTCCAGGTCAGCTTCCTTGCAATCACCACCGATGCACCATCCGCGCAGCTTCAGCTGCTCAACAACAACCCCACCCTCCTTTCCGATCTCCACATCATCCACCTCCCTCATGTTGATGTGTCAAGCAACGACGTCATAGCAATTCGGATCGTTCAAATTGTCCGAGAGAGCCTTCGTTCACTGCCCTCGGTGCTAACCAACTTACACTCACATAAACCGCCGCTAAAAGCTCTGATCGTCGATCCGTTTTGCATCGAAGCCCTCAAAACCGCCGCCGACCACTCTATCCCAACGTATCTTTTCTTGACCGCCTCCGCTTCATTTCTGGCGTTGACCATCTACTTCCCTACGCTTCATGCAGATGTCAAGGGAGACTATGGTTGCATGCCCTTGTGGGTTGACGATCTTCTCCCTGATGTTCTGGTACCAGAAGTCTTGCCTTTATGCAACCGGATCCCACTGGTCAAGGGCATTTTCGTAAACACATGGGAAGAAATCGAGCCGGTAACGCTGAGCGCATTTAGAAACCACCCTTTCTTTGTCAATCTGCCGACGCCGACGATTCATCTCATCGGACCCCTAACTAAAGACAAAGACGCTGACGTAGAATCGGAGCTGCTCAAGTGGCTGGACAAGCAGCCGTGTGACTCGGTTGTTTACGTGTCATTCGGCAGCGGAGGGACGCTGTCAGCGGAGCAGATGACTGAGTTGGCTCATGGGTTGGAGCTGAGTGGAAAACGATTCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 map00940

Pfam Domains

Protein Families

UDPGT

Protein Analysis

290

Amino Acids

31.89

Weight (kDa)

5.34

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003060)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g40150 FvH4_3g40870
malus_domestica	MD06G1146400.v1.1
prunus_persica	Prupe.1G382700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0073601 RchiOBHm_Chr5g0073611 RchiOBHm_Chr5g0073631 RchiOBHm_Chr6g0300581 RchiOBHm_Chr6g0300621
rosa_laevigata	RLG00000011317 RLG00000011322 RLG00000036399
rosa_multiflora	Rmu_co7965784.1_g000001 Rmu_co8424327.1_g000001 Rmu_sc0004226.1_g000018 Rmu_sc0007110.1_g000001 Rmu_ssc0000242.1_g000007
rosa_roxburghii	Rroxscaffold_1G00007660 Rroxscaffold_7G00167630
rosa_rugosa	Rorug04G0403600.1 Rorug05G0425500.1 Rorug05G0425700 Rorug06G0297500
rosa_samantha	Rh5BG029300 Rh5BG503100 Rh5BG503300 Rh5BG503500 Rh5CG526200 Rh5CG526900 Rh5DG029900 Rh5DG515300 Rh5DG515700 Rh6AG409900 Rh6CG424900 Rh6DG410400
rosa_wichuraiana	Rw5G044810 Rw6G035870 Rw6G035910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
Acc65I	GGTACC	1 cut(s)	547
AccB1I	GGYRCC	1 cut(s)	547
AccI	GTMKAC	1 cut(s)	114
AccII	CGCG	1 cut(s)	167
AclWI	GGATC	4 cut(s)	278, 359, 571, 584
AcuI	CTGAAG	1 cut(s)	158
AcvI	CACGTG	1 cut(s)	76
AcyI	GRCGYC	2 cut(s)	255, 677
AfaI	GTAC	1 cut(s)	549
AfiI	CCNNNNNNNGG	1 cut(s)	68
AflIII	ACRYGT	1 cut(s)	783
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	7 cut(s)	94, 135, 172, 178, 353, 739, 850
AluI	AGCT	7 cut(s)	94, 135, 172, 178, 353, 739, 850
Alw26I	GTCTC	1 cut(s)	489
AlwI	GGATC	4 cut(s)	278, 359, 571, 584
Ama87I	CYCGRG	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	169, 178, 739, 760, 795
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
Asp718I	GGTACC	1 cut(s)	547
AspLEI	GCGC	2 cut(s)	169, 641
AspS9I	GGNCC	1 cut(s)	698
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	16, 139
AsuNHI	GCTAGC	1 cut(s)	94
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	698
BamHI	GGATCC	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	547
BbrPI	CACGTG	1 cut(s)	76
BbvI	GCAGC	5 cut(s)	165, 181, 726, 772, 807
BccI	CCATC	2 cut(s)	169, 467
BceAI	ACGGC	2 cut(s)	119, 748
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	489
BfaI	CTAG	2 cut(s)	95, 871
BisI	GCNGC	8 cut(s)	38, 170, 179, 344, 396, 740, 761, 796
BlpI	GCTNAGC	1 cut(s)	635
BlsI	GCNGC	8 cut(s)	39, 171, 180, 345, 397, 741, 762, 797
Bme1390I	CCNGG	2 cut(s)	63, 128
Bme18I	GGWCC	1 cut(s)	698
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	698
BmiI	GGNNCC	3 cut(s)	549, 578, 700
BmrFI	CCNGG	2 cut(s)	63, 128
BmsI	GCATC	3 cut(s)	39, 145, 384
BmtI	GCTAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	63
BsaAI	YACGTR	3 cut(s)	43, 76, 784
BsaHI	GRCGYC	2 cut(s)	255, 677
BsaJI	CCNNGG	2 cut(s)	118, 309
BsaWI	WCCGGW	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse118I	RCCGGY	1 cut(s)	625
Bse1I	ACTGG	1 cut(s)	588
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	2 cut(s)	118, 309
BseGI	GGATG	4 cut(s)	22, 27, 161, 219
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMII	CTCAG	3 cut(s)	626, 819, 842
BseNI	ACTGG	1 cut(s)	588
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	5 cut(s)	165, 181, 726, 772, 807
Bsh1236I	CGCG	1 cut(s)	167
BshNI	GGYRCC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	63, 574, 626
BslFI	GGGAC	2 cut(s)	45, 817
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	1 cut(s)	489
BsmFI	GGGAC	2 cut(s)	45, 817
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
Bsp1720I	GCTNAGC	1 cut(s)	635
BspCNI	CTCAG	3 cut(s)	627, 820, 843
BspFNI	CGCG	1 cut(s)	167
BspLI	GGNNCC	3 cut(s)	549, 578, 700
BspOI	GCTAGC	1 cut(s)	98
BspPI	GGATC	4 cut(s)	278, 359, 571, 584
BspT107I	GGYRCC	1 cut(s)	547
BsrFI	RCCGGY	1 cut(s)	625
BsrI	ACTGG	1 cut(s)	588
BssAI	RCCGGY	1 cut(s)	625
BssECI	CCNNGG	2 cut(s)	118, 309
BssMI	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
BssNI	GRCGYC	2 cut(s)	255, 677
Bst2UI	CCWGG	1 cut(s)	128
BstACI	GRCGYC	2 cut(s)	255, 677
BstBAI	YACGTR	3 cut(s)	43, 76, 784
BstC8I	GCNNGC	2 cut(s)	96, 509
BstDEI	CTNAG	3 cut(s)	635, 828, 851
BstF5I	GGATG	4 cut(s)	22, 27, 161, 219
BstFNI	CGCG	1 cut(s)	167
BstHHI	GCGC	2 cut(s)	169, 641
BstKTI	GATC	6 cut(s)	211, 273, 360, 367, 529, 579
BstMAI	GTCTC	1 cut(s)	489
BstMBI	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
BstMWI	GCNNNNNNNGC	7 cut(s)	164, 175, 178, 313, 631, 748, 757
BstNI	CCWGG	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	511
BstSCI	CCNGG	2 cut(s)	61, 126
BstUI	CGCG	1 cut(s)	167
BstV1I	GCAGC	5 cut(s)	165, 181, 726, 772, 807
BstX2I	RGATCY	1 cut(s)	576
BstXI	CCANNNNNNTGG	1 cut(s)	106
BstYI	RGATCY	1 cut(s)	576
BtgZI	GCGATG	1 cut(s)	62
BtsCI	GGATG	4 cut(s)	22, 27, 161, 219
BtsI	GCAGTG	1 cut(s)	302
BtsIMutI	CAGTG	2 cut(s)	302, 581
Cac8I	GCNNGC	2 cut(s)	96, 509
CfoI	GCGC	2 cut(s)	169, 641
Cfr10I	RCCGGY	1 cut(s)	625
Cfr13I	GGNCC	1 cut(s)	698
CseI	GACGC	3 cut(s)	685, 728, 814
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	5 cut(s)	233, 479, 508, 609, 839
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	3 cut(s)	635, 828, 851
DpnI	GATC	6 cut(s)	210, 272, 359, 366, 528, 578
DpnII	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	158
Eco72I	CACGTG	1 cut(s)	76
Eco88I	CYCGRG	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	126
FaeI	CATG	5 cut(s)	236, 482, 511, 612, 842
FaiI	YATR	9 cut(s)	234, 260, 336, 480, 501, 509, 568, 610, 840
FaqI	GGGAC	2 cut(s)	45, 817
FatI	CATG	5 cut(s)	232, 478, 507, 608, 838
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	8 cut(s)	38, 170, 179, 344, 396, 740, 761, 796
FokI	GGATG	4 cut(s)	14, 29, 148, 206
Fsp4HI	GCNGC	8 cut(s)	38, 170, 179, 344, 396, 740, 761, 796
FspBI	CTAG	2 cut(s)	95, 871
GlaI	GCGC	2 cut(s)	168, 640
GluI	GCNGC	8 cut(s)	38, 170, 179, 344, 396, 740, 761, 796
HapII	CCGG	3 cut(s)	63, 574, 626
HgaI	GACGC	3 cut(s)	685, 728, 814
HhaI	GCGC	2 cut(s)	169, 641
Hin1I	GRCGYC	2 cut(s)	255, 677
Hin1II	CATG	5 cut(s)	236, 482, 511, 612, 842
Hin6I	GCGC	2 cut(s)	167, 639
HinP1I	GCGC	2 cut(s)	167, 639
HincII	GTYRAC	3 cut(s)	115, 456, 523
HindII	GTYRAC	3 cut(s)	115, 456, 523
HinfI	GANTC	4 cut(s)	685, 731, 770, 864
HpaII	CCGG	3 cut(s)	63, 574, 626
HphI	GGTGA	2 cut(s)	16, 139
Hpy166II	GTNNAC	6 cut(s)	115, 302, 456, 523, 604, 781
Hpy188I	TCNGA	6 cut(s)	208, 270, 287, 357, 698, 736
Hpy188III	TCNNGA	2 cut(s)	31, 427
Hpy8I	GTNNAC	6 cut(s)	115, 302, 456, 523, 604, 781
Hpy99I	CGWCG	5 cut(s)	116, 257, 365, 679, 685
HpyAV	CCTTC	1 cut(s)	305
HpyCH4IV	ACGT	6 cut(s)	42, 75, 255, 416, 726, 783
HpyCH4V	TGCA	6 cut(s)	143, 158, 375, 482, 507, 570
HpyF10VI	GCNNNNNNNGC	7 cut(s)	164, 175, 178, 313, 631, 748, 757
HpyF3I	CTNAG	3 cut(s)	635, 828, 851
HpySE526I	ACGT	6 cut(s)	42, 75, 255, 416, 726, 783
Hsp92I	GRCGYC	2 cut(s)	255, 677
Hsp92II	CATG	5 cut(s)	236, 482, 511, 612, 842
HspAI	GCGC	2 cut(s)	167, 639
KpnI	GGTACC	1 cut(s)	551
Kzo9I	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
LmnI	GCTCC	3 cut(s)	736, 817, 847
Lsp1109I	GCAGC	5 cut(s)	165, 181, 726, 772, 807
LweI	GCATC	3 cut(s)	39, 145, 384
MaeI	CTAG	2 cut(s)	95, 871
MaeII	ACGT	6 cut(s)	42, 75, 255, 416, 726, 783
MaeIII	GTNAC	4 cut(s)	71, 76, 628, 767
MalI	GATC	6 cut(s)	210, 272, 359, 366, 528, 578
MboI	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
MboII	GAAGA	3 cut(s)	32, 521, 626
MflI	RGATCY	1 cut(s)	576
MluCI	AATT	2 cut(s)	264, 279
MlyI	GAGTC	1 cut(s)	764
MmeI	TCCRAC	1 cut(s)	825
MslI	CAYNNNNRTG	2 cut(s)	237, 483
MspA1I	CMGCKG	3 cut(s)	178, 798, 815
MspI	CCGG	3 cut(s)	63, 574, 626
MspR9I	CCNGG	2 cut(s)	63, 128
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	167
MwoI	GCNNNNNNNGC	7 cut(s)	164, 175, 178, 313, 631, 748, 757
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
NheI	GCTAGC	1 cut(s)	94
NlaIII	CATG	5 cut(s)	236, 482, 511, 612, 842
NlaIV	GGNNCC	3 cut(s)	549, 578, 700
NmeAIII	GCCGAG	1 cut(s)	99
NmuCI	GTSAC	3 cut(s)	71, 76, 767
NspI	RCATGY	1 cut(s)	511
PaeI	GCATGC	1 cut(s)	511
PaeR7I	CTCGAG	1 cut(s)	89
PfeI	GAWTC	3 cut(s)	685, 731, 864
PflFI	GACNNNGTC	1 cut(s)	808
PfoI	TCCNGGA	1 cut(s)	61
PkrI	GCNGC	8 cut(s)	39, 171, 180, 345, 397, 741, 762, 797
PleI	GAGTC	1 cut(s)	764
PmaCI	CACGTG	1 cut(s)	76
PmlI	CACGTG	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	764
Ppu21I	YACGTR	3 cut(s)	43, 76, 784
Psp6I	CCWGG	1 cut(s)	126
PspCI	CACGTG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	549, 578, 700
PspPI	GGNCC	1 cut(s)	698
PspXI	VCTCGAGB	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	576
PsyI	GACNNNGTC	1 cut(s)	808
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	2 cut(s)	237, 483
SalI	GTCGAC	1 cut(s)	113
SatI	GCNGC	8 cut(s)	38, 170, 179, 344, 396, 740, 761, 796
Sau3AI	GATC	6 cut(s)	208, 270, 357, 364, 526, 576
Sau96I	GGNCC	1 cut(s)	698
SchI	GAGTC	1 cut(s)	764
ScrFI	CCNGG	2 cut(s)	63, 128
SfaNI	GCATC	3 cut(s)	39, 145, 384
Sfr274I	CTCGAG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	698
SlaI	CTCGAG	1 cut(s)	89
SmiMI	CAYNNNNRTG	2 cut(s)	237, 483
SmlI	CTYRAG	2 cut(s)	89, 743
SmoI	CTYRAG	2 cut(s)	89, 743
SphI	GCATGC	1 cut(s)	511
Sse9I	AATT	2 cut(s)	264, 279
SspMI	CTAG	2 cut(s)	95, 871
StyD4I	CCNGG	2 cut(s)	61, 126
TaiI	ACGT	6 cut(s)	45, 78, 258, 419, 729, 786
TaqI	TCGA	5 cut(s)	90, 114, 363, 378, 621
TasI	AATT	2 cut(s)	264, 279
TauI	GCSGC	3 cut(s)	40, 346, 398
TfiI	GAWTC	3 cut(s)	685, 731, 864
TscAI	CASTG	2 cut(s)	309, 588
TseFI	GTSAC	3 cut(s)	71, 76, 767
TseI	GCWGC	5 cut(s)	169, 178, 739, 760, 795
Tsp45I	GTSAC	3 cut(s)	71, 76, 767
TspDTI	ATGAA	4 cut(s)	33, 432, 467, 677
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	2 cut(s)	309, 588
Tth111I	GACNNNGTC	1 cut(s)	808
VpaK11BI	GGWCC	1 cut(s)	698
XceI	RCATGY	1 cut(s)	511
XhoI	CTCGAG	1 cut(s)	89
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	2 cut(s)	95, 871
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.