Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0007649

Physical Location & Seq

Genomic Coordinates Forward (+)

6364043 .. 6368257

Gene Structure 4215 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGAATCGCCGTTCACCGACCCCATCACAAGATACACACGCAAGTGTCGGCTTTAGAAATCTCTCTATCTTTCTCTCTCGTCTCTCTTTCTCTCTCTACACCGTCGCGGGAGAGCTCCACCGCCGATTCATGGCGGCGACGCAGGCGAGTCTTCTCCTCCAGAAACAGCTCAAGGATCTTTGCAAGAACCCGGTCGACGGATTCTCGGCCGGTCTGGTCGATGAAAACAATATCTTTGAGTGGAGCGTCACGATTATCGGACCGCCTGATACGCTCTATGAGGGGGGATTTTTCAATGCCATCATGAGCTTTCCAAATAATTATCCGAACAGCCCTCCGACGGTTAAGTTTACTTCCGAGATATGGCATCCAAATGTTTATACTGATGGGCGTGTTTGCATATCTATTCTTCACCCCCCCGGTGAGGACCCAAATGGTTATGAGCTTGCAAGTGAGCGCTGGACACCTGTCCATACGGTTGAAAGCATAGTCTTGAGTATAATATCAATGCTATCCAGTCCAAATGATGAATCTCCTGCAAATGTTGAAGCTGCAAAGCAGTGGAGAGATCGGAGAGAGGAATTCAAGAAAAAGGTCAGTCGCTGCGTGAGGAAATCACAGGAGATGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

211

Amino Acids

23.71

Weight (kDa)

6.52

Isoelectric Point (pI)

51.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	53 - 202	1.5e-52	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46460 AT3G46460 AT3G46460 AT5G59300
fragaria_vesca	FvH4_3g35650 FvH4_3g35650
malus_domestica	MD00G1137800.v1.1 MD02G1182900.v1.1 MD11G1144800.v1.1
prunus_persica	Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1 Prupe.6G080700_v2.0.a1
pyrus_communis	pycom03g07960 pycom11g09270
rosa_chinensis	RchiOBHm_Chr5g0063821
rosa_laevigata	RLG00000035675
rosa_roxburghii	Rroxscaffold_1G00017010
rosa_rugosa	Rorug05G0360000 Rorug05G0360000
rosa_samantha	Rh5BG434800 Rh5CG457900 Rh5DG447700
rosa_wichuraiana	Rw5G039340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AccII	CGCG	1 cut(s)	107
AciI	CCGC	4 cut(s)	107, 121, 134, 263
AclWI	GGATC	1 cut(s)	183
AcoI	YGGCCR	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	581
AfeI	AGCGCT	1 cut(s)	458
AfiI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
AgsI	TTSAA	4 cut(s)	295, 482, 548, 586
AleI	CACNNNNGTG	1 cut(s)	42
AluBI	AGCT	5 cut(s)	115, 169, 309, 445, 551
AluI	AGCT	5 cut(s)	115, 169, 309, 445, 551
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	183
AlwNI	CAGNNNCTG	1 cut(s)	603
Aor51HI	AGCGCT	1 cut(s)	458
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	551, 603
ApoI	RAATTY	1 cut(s)	581
AspLEI	GCGC	1 cut(s)	459
AspS9I	GGNCC	2 cut(s)	260, 427
AsuC2I	CCSGG	2 cut(s)	191, 420
AsuHPI	GGTGA	3 cut(s)	6, 404, 434
AvaII	GGWCC	2 cut(s)	260, 427
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	2 cut(s)	538, 590
BccI	CCATC	3 cut(s)	31, 308, 380
BcnI	CCSGG	2 cut(s)	191, 420
BcoDI	GTCTC	1 cut(s)	86
BfoI	RGCGCY	1 cut(s)	460
BisI	GCNGC	3 cut(s)	135, 552, 604
BlsI	GCNGC	3 cut(s)	136, 553, 605
Bme1390I	CCNGG	2 cut(s)	191, 420
Bme18I	GGWCC	2 cut(s)	260, 427
BmgT120I	GGNCC	2 cut(s)	260, 427
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	191, 420
BmsI	GCATC	2 cut(s)	376, 615
BoxI	GACNNNNGTC	1 cut(s)	467
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	143
BpuEI	CTTGAG	2 cut(s)	155, 514
BpuMI	CCSGG	2 cut(s)	191, 420
BsaJI	CCNNGG	1 cut(s)	418
Bsc4I	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	1 cut(s)	516
BseDI	CCNNGG	1 cut(s)	418
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
BseNI	ACTGG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	538, 590
Bsh1236I	CGCG	1 cut(s)	107
Bsh1285I	CGRYCG	2 cut(s)	195, 210
BshFI	GGCC	1 cut(s)	209
BsiEI	CGRYCG	2 cut(s)	195, 210
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	3 cut(s)	191, 210, 420
BslI	CCNNNNNNNGG	5 cut(s)	130, 197, 340, 363, 424
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	2 cut(s)	175, 568
BspACI	CCGC	4 cut(s)	107, 121, 134, 263
BspANI	GGCC	1 cut(s)	209
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	303
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	183
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	1 cut(s)	516
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	418
BssMI	GATC	2 cut(s)	175, 568
Bst4CI	ACNGT	3 cut(s)	103, 343, 478
BstC8I	GCNNGC	2 cut(s)	144, 447
BstF5I	GGATG	1 cut(s)	367
BstFNI	CGCG	1 cut(s)	107
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	1 cut(s)	459
BstKTI	GATC	2 cut(s)	178, 571
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	2 cut(s)	175, 568
BstMCI	CGRYCG	2 cut(s)	195, 210
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 271
BstPAI	GACNNNNGTC	1 cut(s)	467
BstSCI	CCNGG	2 cut(s)	189, 418
BstUI	CGCG	1 cut(s)	107
BstV1I	GCAGC	2 cut(s)	538, 590
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BstZI	CGGCCG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	209
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	566
Cac8I	GCNNGC	2 cut(s)	144, 447
CaiI	CAGNNNCTG	1 cut(s)	603
CciI	TCATGA	1 cut(s)	303
CfoI	GCGC	1 cut(s)	459
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	260, 427
CpoI	CGGWCCG	1 cut(s)	260
CseI	GACGC	2 cut(s)	148, 235
CspI	CGGWCCG	1 cut(s)	260
CviAII	CATG	2 cut(s)	130, 304
CviJI	RGCY	8 cut(s)	51, 115, 169, 209, 309, 333, 445, 551
CviKI_1	RGCY	8 cut(s)	51, 115, 169, 209, 309, 333, 445, 551
DpnI	GATC	2 cut(s)	177, 570
DpnII	GATC	2 cut(s)	175, 568
EaeI	YGGCCR	1 cut(s)	207
EagI	CGGCCG	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	207
Eco24I	GRGCYC	1 cut(s)	117
Eco47I	GGWCC	2 cut(s)	260, 427
Eco47III	AGCGCT	1 cut(s)	458
Eco52I	CGGCCG	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoO109I	RGGNCCY	1 cut(s)	427
EcoRI	GAATTC	1 cut(s)	581
EcoT38I	GRGCYC	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	2 cut(s)	133, 307
FatI	CATG	2 cut(s)	129, 303
FauI	CCCGC	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	135, 552, 604
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	135, 552, 604
GlaI	GCGC	1 cut(s)	458
GluI	GCNGC	3 cut(s)	135, 552, 604
GsuI	CTGGAG	1 cut(s)	143
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	3 cut(s)	191, 210, 420
HgaI	GACGC	2 cut(s)	148, 235
HhaI	GCGC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	133, 307
Hin6I	GCGC	1 cut(s)	457
HinP1I	GCGC	1 cut(s)	457
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	5 cut(s)	4, 126, 148, 201, 530
HpaII	CCGG	3 cut(s)	191, 210, 420
HphI	GGTGA	3 cut(s)	6, 404, 434
Hpy166II	GTNNAC	3 cut(s)	14, 196, 351
Hpy188I	TCNGA	5 cut(s)	260, 327, 339, 358, 573
Hpy188III	TCNNGA	5 cut(s)	160, 250, 304, 493, 586
Hpy8I	GTNNAC	3 cut(s)	14, 196, 351
Hpy99I	CGWCG	4 cut(s)	107, 142, 200, 343
HpyCH4III	ACNGT	3 cut(s)	103, 343, 478
HpyCH4V	TGCA	5 cut(s)	183, 399, 449, 539, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 271
Hsp92II	CATG	2 cut(s)	133, 307
HspAI	GCGC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	175, 568
LmnI	GCTCC	2 cut(s)	120, 243
Lsp1109I	GCAGC	2 cut(s)	538, 590
LweI	GCATC	2 cut(s)	376, 615
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	177, 570
MboI	GATC	2 cut(s)	175, 568
MboII	GAAGA	2 cut(s)	143, 401
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	2 cut(s)	319, 581
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	6 cut(s)	167, 274, 345, 418, 571, 603
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	2 cut(s)	42, 372
MspI	CCGG	3 cut(s)	191, 210, 420
MspR9I	CCNGG	2 cut(s)	191, 420
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	2 cut(s)	143, 271
NciI	CCSGG	2 cut(s)	191, 420
NdeII	GATC	2 cut(s)	175, 568
NlaIII	CATG	2 cut(s)	133, 307
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	247
OliI	CACNNNNGTG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	303
PfeI	GAWTC	4 cut(s)	4, 126, 201, 530
PkrI	GCNGC	3 cut(s)	136, 553, 605
PleI	GAGTC	1 cut(s)	156
PpsI	GAGTC	1 cut(s)	156
PpuMI	RGGWCCY	1 cut(s)	427
PshAI	GACNNNNGTC	1 cut(s)	467
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	427
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	260, 427
PspPPI	RGGWCCY	1 cut(s)	427
PstNI	CAGNNNCTG	1 cut(s)	603
PsuI	RGATCY	1 cut(s)	175
RseI	CAYNNNNRTG	2 cut(s)	42, 372
Rsr2I	CGGWCCG	1 cut(s)	260
RsrII	CGGWCCG	1 cut(s)	260
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	3 cut(s)	135, 552, 604
Sau3AI	GATC	2 cut(s)	175, 568
Sau96I	GGNCC	2 cut(s)	260, 427
SchI	GAGTC	1 cut(s)	157
ScrFI	CCNGG	2 cut(s)	191, 420
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	7 cut(s)	117, 171, 311, 447, 469, 553, 597
SfaNI	GCATC	2 cut(s)	376, 615
SinI	GGWCC	2 cut(s)	260, 427
SmiMI	CAYNNNNRTG	2 cut(s)	42, 372
SmlI	CTYRAG	2 cut(s)	170, 493
SmoI	CTYRAG	2 cut(s)	170, 493
Sse9I	AATT	2 cut(s)	319, 581
SsiI	CCGC	4 cut(s)	107, 121, 134, 263
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	189, 418
TaaI	ACNGT	3 cut(s)	103, 343, 478
TaqI	TCGA	2 cut(s)	195, 219
TasI	AATT	2 cut(s)	319, 581
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	4 cut(s)	4, 126, 201, 530
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TscAI	CASTG	1 cut(s)	566
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	551, 603
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	4 cut(s)	17, 118, 237, 543
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	260, 427
XapI	RAATTY	1 cut(s)	581
XmiI	GTMKAC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.